These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10150#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1754 fasta sequence [ACTACTAGTAGTAGTATTAGTAGTACTGTTTAAATGATTGGCATGATTCATACAACTTACTTCTGATTTTGTCACTGTTATAGTCTTACATAATAAAGTTGATGGTATTGAAGCTGATGGTAAACAATCTAAATCAACAATATCAGGTAATGTTTTTTGAGTAGGCGTATCAATTTTTTGAATAATTACCATTGATTCCGATGATAAATTATAATTGGAATTGATACATTGTTGTGAAATAACATAATGTTTATTAGGGGGTACAGGTGTAGTAAGCGGACTATCAGTTGTAGCAGTGATGATAGGTTTATCAAGATTAGTAATTGAATTTGTTGTGAAGTGATTGACAAGATTTTCATATACACCACTTCTATAATCATCTATTTGTTCGTGCTGTTCACATGAATCAAAATAGTCATGTCTATTACTTAAATGTGGCAAATCTGGAGGTCCAAGTTTGAAAGCTAGTTCAGGTTCCATATTCACTGAGGAGGTTAGATTTGTATTCAATACATTTTGATTAGAATGATTATTGGATACAACAGATGATAAAATAAATAAAGGTTGGTCAACTTTTAAATCTTGGGTATATGGTGTTGGTGTTAATAATGTACACTGCTTTTGGCCTGTGTTATTAATAGGAGAAAAATTTTCCGAAGTATTTGAATTTATAACAGTTGTATGCGGGAAAGAATGATTTAACGATGTATTCATATAAGTATTATTGTCAACTAAATGTGTATCATTCAAATTTGCACAATCCACCGGTAATGTTATTTGATTATTAGATGAATGTTGAATAATGTAGGGCATAGAAGATTGTTTTGATACTAAAATATTATTTACGTGATCAGGAGGATGGCTAGTTGATTTTGGTAAATTAGTAAATATTGCCTTTGAGTTTATAACACTATTATTACAGGTGAATGGGGCAACTGAGGAGGAGCACAGACTTGGTTGATGTGATGATCTGGGATAATGAATTAGTTGGGAATTAGAGGGGGAATTAGGTTTTGTAGCTGATGATATGTGAGAAACAAGAACAGGTTGGATATGAGGCAAATATTCATTTTCCACTGAGTTTATCGATGAAATTAATGAATTAGGTGGTAAACTCATTGAGCTTACCGGTCTCATATGAGTTTCTGTTACGGTATTTATTGAATTTCGAGGATGAATACCAAATGTAGACTGCGGTTCAACGACAAATCTCACATTTGATTG-AATATCAATTTGATCAAATTTCTGTTTATCATCGTCAGTTGGTTGACAAATTTGATCACAACCATTGTTATTGTTTATATTTTTTATATTTGCAATGGGAGATTGATCCACATCATTCTCATCATCATCGTCTTCATCATCTTCGTCGACACCACCATCGTTCTCGTTTTCTTCGCTTCTCATATTTGAGCAAGGCTGTGACGGGATAACGCCAGATCCGTCATTACAATTCGATCTCATGCGGCGATTTGTTAACCTTTCCATATCAGAATTGCTAAGGAATTCATTTGCACGATGATG-TTTTTTTAATCTTTGTAAAGCATGCTCCACCGTAACACTAGCATACTGATAAAGACGATTGCTGCGTGTGAATACTAGTAAAGCGATTTCGCATTCACACAATACGCTCAACTCGTATGCCTTTTTAAATAGACCACTTTTACGCTTTGCAAATGTGACCAGTCGATTCTTTTCATCTTTGATAAATTTTATCTCGATTTTTTTACGTCCCATTTCCAAGGCAAAGATTC] [+] EMBL CD062016 [ACTACTAGTAGTAGTATTAGTAGTACTGTTTAAATGATTGGCATGATTCATACAACTTACTTCTGATTTTGTCACTGTTATAGTCTTACATAATAAAGTTGATGGTATTGAAGCTGATGGTAAACAATCTAAATCAACAATATCAGGTAATGTTTTTTGAGTAGGCGTATCAATTTTTTGAATAATTACCATTGATTCCGATGATAAATTATAATTGGAATTGATACATTGTTGTGAAATAACATAATGTTTATTAGGGGGTACAGGTGTAGTAAGCGGACTATCAGTTGTAGCAGTGATGATAGGTTTATCAAGATTAGTAATTGAATTTGTTGTGAAGTGATTGACAAGATTTTCATATACACCACTTCTATAATCATCTATTTGTTCGTGCTGTTCACATGAATCAAAATAGTCATGTCTATTACTTAAATGTGGCAAATCTGGAGGTCCAAGTTTGAAAGCTAGTTCAGGTTCCATATTCACTGAGGAGGTTAGATTTGTATTCAATACATTTTGATTAGAATGATTATTGGATACAACAGATGATAAAATAAA ] [-] EMBL CD096385 [ CTATCAGTTGTAGCAGTGATGATAGGTTTATCAAGATTAGTAATTGAATTTGTCGTGAAGTGATTGACAAGATTTTCATATACACCACTTCTATAATCATCTATTTGTTCGTGCTGTTCACATGAATCAGAATAGTCATGTCTATTACTTAAATGTGGCAAATCTGGAGGTCCAAGTTTGAAAGCTAGTTCAGGTTCCATATTCACTGAGGAGGTTAGATTTGTATTCAATACATTTTGATTGGAATGATTATTGGATACAACAGATGATAAAATAAATAAAGGTTGGTCAACTTTTAAATCTTGGGTATATGGTGTTGGTGTTAATAATGTACACTGCTTTTGGCCTGTGTTATTAATAGGAGAAAAATTTTCCGAAGTATTTGAATTTATAACAGTTGTATGCGGGAAAG ] [-] EMBL CD159551 [ TAATGTACACTGCATTTGGCCTGTGTTATTAATAGGAGAAAAATTTTCCGAAGTATTTGAATTTATAACAGTTGTATGCGGGAAAGAATGATTTAACGATGTATTCATATAAGTATTATTGTCAACTAAATGTGTATCATTCAAATTTGCACAATCCACCGGTAATGTTATCTGATTATTAGATGAATGTTGAATAATGTAGGGCATAGAAGATTGTTTTGATACTAAAATATTATTTACGTGATCAGGAGGATGGCTAGTTGATTTTGGTGAATTAGTAAATATTGCCTTTGAGTTTATAACACTATTATTACAGGTGAATGGGGCAACTGAGGAGGAGCACAGACTTGGTTGATGTGATGATCTGGGATAATG ] [+] EMBL CD066864 [ TCCGAAGTATTTGAATTTATAACAGTTGTATGCGGGAAAGAATGATTTAACGATGTATTCATATAAGTATTATTGTCAACTAAATGTGTATCATTCAAATTTGCACAATCCACCGGTAATGTTATTTGATTATTAGATGAATGTTGAATAATGTAGGGCATAGAAGATTGTTTTGATACTAAAATATTATTTACGTGATCAGGAGGATGGCTAGTTGATTTTGGTAAATTAGTAAATATTGCCTTTGAGTTTATAACACTATTATTACAGGTGAATGGGGCAACTGAGGAGGAGCACAGACTTGGTTGATGTGATGATCTGGGATAATGAATTAGTTGGGAATTAGAGGGGGAATTAGGTTTTGTAGCTGATGATATGTGAGAAACAAGAACAGGTTGGATATGAGGCAAATATTCATTTTCCACTGAGTTTATCGATGAA ] [+] EMBL CD066928 [ TCCGAAGTATTTGAATTTATAACAGTTGTATGCGGGAAAGAATGATTTAACGATGTATTCATATAAGTATTATTGTCAACTAAATGTGTATCATTCAAATTTGCACAATCCACCGGTAATGTTATTTGATTATTAGATGAATGTTGAATAATGTAGGGCATAGAAGATTGTTTTGATACTAAAATATTATTTACGTGATCAGGAGGATGGCTAGTTGATTTTGGTAAATTAGTAAATATTGCCTTTGAGTTTATAACACTATTATTACAGGTGAATGGGGCAACTGAGGAG ] [-] EMBL CD149503 [ GACTTGGTTGATGTGATGATCTGGGATAAAGAATTAGTTGGG ATTAGAGGGGGGAATAGGTTTTGTAGCTGATGATATGTGAGAAACAAGAACAGGTTGGATATGAGGCAAATATTCATTTTCCACTGAGTTTATCGATGAAATTAATGAATTAGGTGGTAAACTCATTGAGCTTACCGGTCTCATATGAGTTTCTGTTACGGTATTTATTGAATTTCGAGGATGAATACCAAATGTAGACTGCGGTTCAACGACAAATCTCACATTTGATTG AATATCAATTTGATCAAATTTCTGTTTATCATCGTCAGTTGGTTGACAAATTTGATCACAACCATTGTTATTGTTTATATTTTTTATATTTGCAATGGGAGATTGATCCACATCATTCTCATCATCATCGTCTTCATCATCTTCGTCGACACCACCATCGTTCTCGTTTTCTTCGCTTCTCATATTTGAGCAAGGCTGTGACGGGATAACGCCAGATCCGTCATT ] [+] EMBL CD095877 [ TGGTTGATGTGATGATCTGGGATAATGAATTAGTTGGGAATTAGAGGGGGAATTAGGTTTTGTAGCTGATGATATGTGAGAAACAAGAACAGGTTGGATATGAGGCAAATATTCATTTTCCACTGAGTTTATCGATGAAATTAATGAATTAGGTGGTAAACTCATTGAGCTTACCGATCTCATATGAGTTTCTGTTACGGTATTTATTGAATTTCGAGGATGAATACCAAATGTAGACTGCGGTTCAACGACAAATCTCACATTTGATTG AATATCAATTTGATCAAATTTCTGTTTATCATCGTCAGTTGGTTGACAAATTTGATCACAACCATTGTTATTGTTTATATTTTTTATATTTGCAATGGGAGATTGATCCACATCATTCTCATCATCATCGTCTTCATCATCTTCGTCGACACCACCATCGTTCTCGTTTTCTTCGCTTCTCATATTTGAGCAAGGCTGTGACGGGATAACGCCAGATCCGTCATTACAATTCGATCTCATGCGGCGATTTGTTAACCTTTCCATATCAGAATTGCTAAGGAATTCATTTGCACGATGATGTTTTTTTTAATCTTTG ] [+] EMBL CD166093 [ AACAGGTTGGATATGAGGCAAATATTCATTTTCCACTGAGTTTATCGATGAAATTAATGAATTAGGTGGTAAACTCATTGAGCTTACCGGTCTCATATGAGTTTCTGTTACGGTATTTATTGAATTTCGAGGATGAATACCANATGTAGACTGCGGTTCAACGACAAATCTCACATTTGATTGAAATATC ATTTGATCAAATTTCTGTTTATCATCGTCAGTTGGTTGACAAAT ] [-] EMBL CD152327 [ AACCATTGTTATTGTTTATATTTTTTATATTTGCAATGGGAGATTGATCCACATCATTCTCATCATCATCGTCTTCATCATCTTCGTCGACACCACCATCGTTCTCGTTTTCTTCGCTTCTCATATTTGAGCAAGGCTGTGACGGGATAACGCCAGATCCGTCATTACAATTCGATCTCATGCGGCGATTTGTTAACCTTTCCATATCAGAATTGCTAAGGAATTCATTTGCACGATGATGTTTTTTTTAATCTTTGTAGAGCATGCTCCACCGTAACACTAGCATACTGATAAAGACGATTGCTGCGTGTGAATACTAGTAAAGCGATTTCGCATTCACACAATACGCTCAACTCGTATGCCTTTTTAAATAGACCACTTTTACGCTTTGCAAATGTGACCAGTCGATTCTTTTCATCTTTGATAAATTTTATCTCGAT ] [-] EMBL AI976213 [ ATCCACATCATTCTCATCATCATCGTCTTCATCATCTTCGTCGACACCACCATCGTTCTCGTTTTCTTCGCTTCTCATATTTGAGCAAGGCTGTGACGGGATAACGCCAGATCCGTCATAACAATTCGATCTCATGCGGCGATTTGATAACCTTTCCAGATCAGAATTGCTAAGGAATTCATTTGCACGAGGATG TTTTTATAATCTTTGTAAAGCATGCTCCACGGTAACTCTAGCATACTGATAAAGACGATTGCTGCGTGTGAATACTAGTAAAGCGATTTCGCATTCACACAATACGCTCAACTCGTATGCCTTTTTAAATAGACCACTTTTACGCTTTGCAAATGTGACCAGTCGATTCTTTTCATCTTTGATAAATTTTATCTAGATTTTTTTACGTCCCATTTCCAAGGCAAAGATTC] [-] EMBL CD066933 [ GTTCTCGTNTTCTTCGCTTCTCATATTTGAGCAAGGCTGTGACGGGATAACGCCAGATCCGTCATTACAATTCGATCTCATGCGGCGATTTGTTAACCTTTCCATATCAGAATTGCTAAGGAATTCATTTGCCCGATGATG TTTTTTTAATCTTTGTAAAGCATGCTCCACCGTAACACTAGCATACTGATAAAGACGATTGCTGCGTGTGAATACTAGTAAAGCGATTTCGCATTCACACAATACGCTCAACTCGTATGCCTTTTTAAATAGACCACTTTTACGCTTTGCAAATGTGACCAGTCGATTCTTTTCATCTTTGATAAATTTTATCTCGATTTTTTTACGTCCCATTTCCAA ] [-] EMBL CD066858 [ GGATAACGCCAGATCCGTCATTACAATTCGATCTCATGCGGCGATTTGTTAACCTTTCCATATCAGAATTGCTAAGGAATTCATTTGCACGATGATG TTTTTTTAATCTTTGTAAAGCATGCTCCACCGTAACACTAGCATACTGATAAAGACGATTGCTGCGTGTGAATACTAGTAAAGCGATTTCGCATTCACACAATACGCTCAACTCGTATGCCTTTTTAAATAGACCACTTTTACGCTTTGCAAATGTGACCAGTCGATTCTTTTCATCTTTGATAAATTTTATCTCGATTTTTTTACGTCCCATTTCCAA ] consensusID : consensus_10150#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence [TTTTGATACTAAAATATTATTTACGTGATCAGGAGGATGGCTAGTTGATTTTGGTAAATTAGTAAATATTGCGTTCAGGTTCCATATTCACTGAGGAGGTTAGATTTGTATTCAATACATTTTGATTAGAATGATTATTGGATACAACAGATGATAAAATAAATAAAGGTTGGTCAACTTTTAAATCTTGGGTATATGGTGTTGGTGTTAATAATGTACACTGCATTTGGCCTGTGTTATTAATAGGAGAAAAATTTTCCGAAGTATTTGAATTTATAACAGTTGTATGCGGGAAAGAATGATTTAACGATGTATTCATATAAGTATTATTGTCAACTAAATGTGTATCATTCAAATTTGCACAATCCACCGGTAATGTTATTTGATTATTAGATGAATGTTGAATAATGTAGGGCATAGAAGATTGTTTTGATACTAAAATATTATTTACGTGATCAGGAGGATGGCTAGTTGATTTTGGTAAATTAGTAAATATTGCGTTCAGGTTCCATATTCACTGAGGAGGTTAGATTTGTATTCAATACATTTTGATTAGAATGATTATTGGATACANCAG] [+] EMBL CD116201 [TTTTGATACTAAAATATTATTTACGTGATCAGGAGGATGGCTAGTTGATTTTGGTAAATTAGTAAATATTGCGTTCAGGTTCCATATTCACTGAGGAGGTTAGATTTGTATTCAATACATTTTGATTAGAATGATTATTGGATACAACAGATGATAAAATAAATAAAGGTTGGTCAACTTTTAAATCTTGGGTATATGGTGTTGGTGTTAATAATGTACACTGCATTTGGCCTGTGTTATTAATAGGAGAAAAATTTTCCGAAGTATTTGAATTTATAACAGTTGTATGCGGGAAAGAATGATTTAACGATGTATTCATATAAGTATTATTGTCAACTAAATGTGTATCATTCAAATTTGCACAATCCACCGGTAATGTTATTTGATTATTAGATGAATGTTGAATAATGTAGGGCATAGAAGATTGTTTTGATACTAAAATATTATTTACGTGATCAGGAGGATGGCTAGTTGATTTTGGTAAATTAGTAAATATTGCGTTCAGGTTCCATATTCACTGAGGAGGTTAGATTTGTATTCAATACATTTTGATTAGAATGATTATTGGATACANCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10150#0 ACTACTAGTAGTAGTATTAGTAGTACTGTTTAAATGATTGGCATGATTCATACAACTTAC 60 consensus_10150#1 ------------------------------------------------------------ consensus_10150#0 TTCTGATTTTGTCACTGTTATAGTCTTACATAATAAAGTTGATGGTATTGAAGCTGATGG 120 consensus_10150#1 ------------------------------------------------------------ consensus_10150#0 TAAACAATCTAAATCAACAATATCAGGTAATGTTTTTTGAGTAGGCGTATCAATTTTTTG 180 consensus_10150#1 ------------------------------------------------------------ consensus_10150#0 AATAATTACCATTGATTCCGATGATAAATTATAATTGGAATTGATACATTGTTGTGAAAT 240 consensus_10150#1 ------------------------------------------------------------ consensus_10150#0 AACATAATGTTTATTAGGGGGTACAGGTGTAGTAAGCGGACTATCAGTTGTAGCAGTGAT 300 consensus_10150#1 ------------------------------------------------------------ consensus_10150#0 GATAGGTTTATCAAGATTAGTAATTGAATTTGTTGTGAAGTGATTGACAAGATTTTCATA 360 consensus_10150#1 ------------------------------------------------------------ consensus_10150#0 TACACCACTTCTATAATCATCTATTTGTTCGTGCTGTTCACATGAATCAAAATAGTCATG 420 consensus_10150#1 -----------------TTTTGATACTAAAATATTATTTACGTGA-TCAGGAGGATGG-- 40 * ** * * ** ** *** *** * * consensus_10150#0 TCTATTACTTAAATGTGGCAAATCTGGAGGTCCAAGTTTGAAAGCTAGTTCAGGTTCCAT 480 consensus_10150#1 ----CTAGTTGATTTTGGTAAATTAGTAAAT-----------ATTGCGTTCAGGTTCCAT 85 ** ** * * *** **** * * * * ************* consensus_10150#0 ATTCACTGAGGAGGTTAGATTTGTATTCAATACATTTTGATTAGAATGATTATTGGATAC 540 consensus_10150#1 ATTCACTGAGGAGGTTAGATTTGTATTCAATACATTTTGATTAGAATGATTATTGGATAC 145 ************************************************************ consensus_10150#0 AACAGATGATAAAATAAATAAAGGTTGGTCAACTTTTAAATCTTGGGTATATGGTGTTGG 600 consensus_10150#1 AACAGATGATAAAATAAATAAAGGTTGGTCAACTTTTAAATCTTGGGTATATGGTGTTGG 205 ************************************************************ consensus_10150#0 TGTTAATAATGTACACTGCTTTTGGCCTGTGTTATTAATAGGAGAAAAATTTTCCGAAGT 660 consensus_10150#1 TGTTAATAATGTACACTGCATTTGGCCTGTGTTATTAATAGGAGAAAAATTTTCCGAAGT 265 ******************* **************************************** consensus_10150#0 ATTTGAATTTATAACAGTTGTATGCGGGAAAGAATGATTTAACGATGTATTCATATAAGT 720 consensus_10150#1 ATTTGAATTTATAACAGTTGTATGCGGGAAAGAATGATTTAACGATGTATTCATATAAGT 325 ************************************************************ consensus_10150#0 ATTATTGTCAACTAAATGTGTATCATTCAAATTTGCACAATCCACCGGTAATGTTATTTG 780 consensus_10150#1 ATTATTGTCAACTAAATGTGTATCATTCAAATTTGCACAATCCACCGGTAATGTTATTTG 385 ************************************************************ consensus_10150#0 ATTATTAGATGAATGTTGAATAATGTAGGGCATAGAAGATTGTTTTGATACTAAAATATT 840 consensus_10150#1 ATTATTAGATGAATGTTGAATAATGTAGGGCATAGAAGATTGTTTTGATACTAAAATATT 445 ************************************************************ consensus_10150#0 ATTTACGTGATCAGGAGGATGGCTAGTTGATTTTGGTAAATTAGTAAATATTGCCTTTGA 900 consensus_10150#1 ATTTACGTGATCAGGAGGATGGCTAGTTGATTTTGGTAAATTAGTAAATATTGCGTTCAG 505 ****************************************************** ** consensus_10150#0 GTTTATAACACTATTATTACAGGTGAATGGGGCAACTGAGGAGGAGCACAGACTTGGTTG 960 consensus_10150#1 GTT-------CCATATTCACTGAGGA--GGTTAGATTTGTATTCAATACAT-TTTGATTA 555 *** * ** * ** * ** ** * * * *** *** ** consensus_10150#0 ATGTGATGATCTGGGATAATGAATTAGTTGGGAATTAGAGGGGGAATTAGGTTTTGTAGC 1020 consensus_10150#1 GAATGATTATTGGATACANCAG-------------------------------------- 577 **** ** * * * consensus_10150#0 TGATGATATGTGAGAAACAAGAACAGGTTGGATATGAGGCAAATATTCATTTTCCACTGA 1080 consensus_10150#1 ------------------------------------------------------------ consensus_10150#0 GTTTATCGATGAAATTAATGAATTAGGTGGTAAACTCATTGAGCTTACCGGTCTCATATG 1140 consensus_10150#1 ------------------------------------------------------------ consensus_10150#0 AGTTTCTGTTACGGTATTTATTGAATTTCGAGGATGAATACCAAATGTAGACTGCGGTTC 1200 consensus_10150#1 ------------------------------------------------------------ consensus_10150#0 AACGACAAATCTCACATTTGATTGAATATCAATTTGATCAAATTTCTGTTTATCATCGTC 1260 consensus_10150#1 ------------------------------------------------------------ consensus_10150#0 AGTTGGTTGACAAATTTGATCACAACCATTGTTATTGTTTATATTTTTTATATTTGCAAT 1320 consensus_10150#1 ------------------------------------------------------------ consensus_10150#0 GGGAGATTGATCCACATCATTCTCATCATCATCGTCTTCATCATCTTCGTCGACACCACC 1380 consensus_10150#1 ------------------------------------------------------------ consensus_10150#0 ATCGTTCTCGTTTTCTTCGCTTCTCATATTTGAGCAAGGCTGTGACGGGATAACGCCAGA 1440 consensus_10150#1 ------------------------------------------------------------ consensus_10150#0 TCCGTCATTACAATTCGATCTCATGCGGCGATTTGTTAACCTTTCCATATCAGAATTGCT 1500 consensus_10150#1 ------------------------------------------------------------ consensus_10150#0 AAGGAATTCATTTGCACGATGATGTTTTTTTAATCTTTGTAAAGCATGCTCCACCGTAAC 1560 consensus_10150#1 ------------------------------------------------------------ consensus_10150#0 ACTAGCATACTGATAAAGACGATTGCTGCGTGTGAATACTAGTAAAGCGATTTCGCATTC 1620 consensus_10150#1 ------------------------------------------------------------ consensus_10150#0 ACACAATACGCTCAACTCGTATGCCTTTTTAAATAGACCACTTTTACGCTTTGCAAATGT 1680 consensus_10150#1 ------------------------------------------------------------ consensus_10150#0 GACCAGTCGATTCTTTTCATCTTTGATAAATTTTATCTCGATTTTTTTACGTCCCATTTC 1740 consensus_10150#1 ------------------------------------------------------------ consensus_10150#0 CAAGGCAAAGATTC 1754 consensus_10150#1 -------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||