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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10151#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1045 fasta sequence
[CTATGTGACTCATCTAAGGCTCTCGATGTGATTTTTATAGTTCGCACTAAGGTTTGTTCATTGTACGTCATTTGATCCCTGTCATGGTTTTTTTATGGGTTTTATATGTTTGATGAGTTTGCCCACATTTTCTTTTGTTCTCTGTTCCGCTTTTCGTGGTGAAAGGTGGGACTACCACCGTAAAACTGAACTTCCCTTAGTTCCCTTTAACACAACGTACTTCAATTACAATGTATAATGGGATAGGCTTACCAACTCCTCGAGGCAGTGGGACGAATGGATATGTTCAGAAAAATCTGGCTTTCATTAGTAATTTCAAAGAGCAAAACCCCTACAAAACAGAGGAGGACTTAAAGAGAGCAGATGCTCTGCTGTTTAAGGAACCAAATAAAGAAATACTAGAGCATGAACGGAAACGAAAAATCGAAGTGAAATGTTTTGAAATGGAACAGGAAATGGAGGAACAAGGTTACACGCAAAGCGAAATCGAATTTAGGGTCAGTGGATTTCGGAAAAAGTTGCTGGATGAGTTAAAGGCCTCCGAAATAAAAAAAACTCCCAATGTGGAGCCATTCGAAATCTCTCAGTCTGAACACGGCAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGTAAATATCCTTAAAAACACAATTTTTAAAGAGGCACTGGGAATCGGGGAACAATTTCAGGATGGAAATTCCGTAGAGTTGGCTGTTCAGCGGAAAAAAGATGACGCA-GAAA-CGAAGCGTCTAGTCGAGGCACAAAAGGAGATGAAAACATTGGATAGTTCTGATGATGATGAAGTCAGTAGTAGTATTAGTAGTCATTCCAAAGATAACAACTTGAAACAACAACATAAGAGGAAGAAAAAGGAGAAAAAGAAAAAGAAATCAGTT-AAAAAAGAAAACATTCACAATCTGGCGATGATGATAACGATGGACGAGCTGTACAGGGTCGTGGTGAATTTAATTTCACTTCAAGTTCTATGACATATCATCACACAAATGATGAACGAAGTCGTCGTAAACAATATCATGAA]
[+] EMBL CD155259 [CTATGTGACTCATCTAAGGCTCTCGATGTGATTTTTATAGTTCGCACTAAGGTTTGTTCATTGTACGTCATTTGATCCCTGTCATGGTTTTTTTATGGGTTTTATATGTTTGATGAGTTTGCCCACATTTTCTTTTGTTCTCTGTTCCGCTTTTCGTGGTGAAAGGTGGGACTACCACCGTAAAACTGAACTTCCCTTAGTTCCCTTTAACACAACGTACTTCAATTACAATGTATAATGGGATAGGCTTACCAACTCCTCGAGGCAGTGGGACGAATGGATATGTTCAGAAAAATCTGGCTTTCATTAGTAATTTCAAAGAGCAAAACCCCTACAAAACAGAGGAGGACTTAAAGAGAGCAGATGCTCTGCTGTTTAAGGAACCAAATAAAGAAATACTAGAGCATGAACGGAAACGAAAAATCGAAGTGAAATGTTTTGAAATGTAACAGGAAATGGAGGAACAAGGTTACACGCAAAGCGAAATCGA ]
[+] EMBL CD153057 [ AGAGCAAAACCCCTACAAAACAGAGGAGGACTTAAAGAGAGCAGATGCTCTGCTGTTTAAGGAACCAAATAAAGAAATACTAGAGCATGAACGGAAACGAAAAATCGAAGTGAAATGTTTTGAAATGGAACAGGAAATGGAGGAACAAGGTTACACGCAAAGCGAAATCGAATTTAGGGTCAGTGGATTTCGGAAAAAGTTGCTGGATGAGTTAAAGGCCTCCGAAATAAAAAAAACTCCCAATGTGGAGCCATTCGAAATCTCTCAGTCTGAACACGGCAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGTAAATATCCTTAAAAACATAATTTTTAAAGAGGCACTGGGAATCGGGGAACAATTTCAGGATGGAAATTCCGTAGAGTTGGCTGTTCAGCGGAAAAAAGATGACGCA GAAA CGAAGCGTCTAGTCGAGGCACANAAGGAGATGAAAACATTGGATAGTTCTGATGATGATGAAGTCAGTAGTAGTATTAGTAGTCATTCCANAGATAACAA ]
[-] EMBL CD155996 [ AGGACTTAAAGAGAGCAGATGCTCTGCTGTTTAAGGAACCAAATAAAGAAATACTAGAGCATGAACGGAAACGAAAAATCGAAGTGAAATGTTTTGAAATGGAACAGGAAATGGAGGAACAAGGTTACACGCAAAGCGAAATCGAATTTAGGGTCAGTGGATTTCGGAAAAAGTTGCTGGATGAGTTAAAGGCCTCCGAAATAAAAAAAACTCCCAATGTGGAGCCATTCGAAATCTCTCAGTCTGAACACGGCAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGTAAATATCCTTAAAAACACAATTTTTAAAGAGGCACTGGGAAACGGGGAACAATTTCAGGAT ]
[+] EMBL CD088108 [ AAAAAAAACTCCCAATGTGGAGCCATTCGAAATCTCTCAGTCTGAACACGGCAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGTAAATATCCTTAAAAACACAATTTTTAAAGAGGCACTGGGAATCGGGGAACAATTTCAGGATGGAAATTCCGTAGAGTTGGCTGTTCAGCGG AAAAAGATGACGCA GAAA CGAAGCGTCTAGTCGAGGCACAAAAGGAGATGAAAACATTGGATAGTTCTGATGAAGATGAAGTCA ]
[+] EMBL CD060906 [ TCCCAATGTGGAGCCATTCGAAATCTCTCAGTCTGAACACGGCAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGTAAATATCCTTAAAAACACAATTTTTAAAGAGGCACTGGGAATCGGGGAACAATTTCAGGATGGAAATTCCGTAGAGTTGGCTGTTCAGCGGAAAAAAGATGACGCA GAAA CGAAGCGTCTAGTCGAGGCACAAAAGGAGATGAAAACATTGGATAGTTCTGATGATGATGAAGTCAGTAGTAGTATTAGTAGTCATTCCAAAGATAACAACTTGAAACAACAACATAAGAGGAAGAAAAAGGAGAAAAAGAAAAAGAAATCAGTT AAAAAAGAAAACATTCACAATCTGGCGATGATGATAACGATGGACGAGCTGTA ]
[-] EMBL CD060939 [ CCCAATGTGGAGCCATTCGAAATCTCTCAGTCTGAACACGGCAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGTAAATATCCTTAAAAACACAATTTTTAAAGAGGCACTGGGAATCGGGGAACAATTTCAGGATGGAAATTCCGTAGAGTTGGCTGTTCAGCGGAAAAAAGATGACGCA GAAA CGAAGCGTCTAGTCGAGGCACAAAAGGAGATGAAAACATTGGATAGTTCTGATGATGATGAAGTCAGTAGTAGTATTAGTAGTCATTCCAAAGATAACAACTTGAAACAACAACATAAGAGGAAGAAAAAGGAGAAAAAGAAAAAGAAATCAGTT AAAAAAGAAAACATTCAC ATCTGGCGATGATGATAACGAT GACGAGCTGT ]
[-] EMBL CD060935 [ CCCNATGTGGAGCCATTCGAAATCTCTCAGTCTGAACACGGCAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGTAAATATCCTTAAAAACACAATTTTTAAAGAGGCACTGGGAATCGGGGAACAATTTCAGGATGGAAATTCCGTAGAGTTGGCTGTTCAGCGGAAAAAAGATGACGCA GAAA CGAAGCGTCTAGTCGAGGCACAAAAGGAGATGAAAACATTGGATAGTTCTGATGATGATGAAGTCAGTAGTAGTATTAGTAGTCATTCCAAAGATAACAACTTGAAACAACAACATAAGAGGAAGAAAAAGGAGAAAAAGAAAAAGAAATCAGTT AAAAAAGAAAACATTCACAATCTGGCGATGAT TAACGATGGACGA CTGTACAGGGTCG ]
[+] EMBL CD133847 [ GAGCCATTCGAAATCTCTCAGTCTGAGCACGGCAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGTAAATATCCTTAAAAACACAATCTTTAAAGAGGCACTGGGAATCGGGGAACAATTTCAGGATGGAAATTCCGTAGAGTTGGCTGTTCAGCGGAAAAAAGATGACGCA GAAA CGAAGCGTCTAGTCGAGGCACAAAAGGAGATGAAAACATTGGATAGTTCTGATGATGATGAAGTCAGTAGTAGTATTAGTAGTCATTCCAAAGATAACAACTTGAAACAACAACATAAGAGGAAGAAAAAGGAGAAAAAGAAAAAGAAATCAGTTAAAAAAAGAAAACATTCACAATCTGGTGATGATGATAACGATGG CG GTAGTA ATGGTGTTGGTGAATTTAATTTCACTTCAAGTTCTATGACATATCATCACACAAATGATGAACGAAGTCGTCGTAAACAATATCATGAA]
[+] EMBL CD150187 [ GAAATCTCTCAGTCTGAACACGGCAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGAAAATATCCTTAAAAACACAATTTTTAAAGAGGCACTGGGAATCGGGGAACAATTTCAGGATGGAAATTCCGTAGAGTTGGCTGTTCAGCGGAAAAAAGATGACGCA CAAA CGAAGCGT ]
[+] EMBL CD061821 [ TTTCAGGATGGAAATTCCGTAGAGTTGGCTGTTCAGCGGAAAAAAGATGACGCAGGAAAGCGAAGCGTCTAGTCGAGGCACGAAAGGAGATGACAACATTGGATAGTTCTGATGATGATGAAGTCAGTAGTAGTATTAGTAGTCATTCCAAAGATAACAACTTGAAACAACAACATAAGAGGAAGAAAAAGGAGAAAAAGAAAAAGAAATCAGTTAAAAAAAGAAAACATTCACAATCTG ]
consensusID : consensus_10151#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 419 fasta sequence
[TTGAACACGGGCAAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGTAAATATCCTTAAAAACACAATCTTTAAAGAGGCACTGGGAATCGGGGAACAATTTCNGGATGGAAATTCCGTAGAGTTGGCTGTTCAGCGGAAAAAAGATGACGCAGAAACGAAGCGTCTAGTCGAGGCACAAAAGGAGATGAAGCTATTTACAAATGTGAAACAGTCATTTCAATATTGGGATTTAAGTTTCGCGCTTCAGTACACGAAGAAACAACCAGACGACAGTTAGTTATACTTACTTGATATCTTATCATTTTGGAATCACATTGAAGTCAGTGTCACTAACATTGGATAGTTCTGATGATGATGAAGTCAGTAGTAGTATTAGTAGTCATTCCAAAGATAACAACTTGAAACAACAACAT]
[-] EMBL AI014225 [TTGAACACGGGCAAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGTAAATATCCTTAAAAACACAATCTTTAAAGAGGCACTGGGAATCGGGGAACAATTTCNGGATGGAAATTCCGTAGAGTTGGCTGTTCAGCGGAAAAAAGATGACGCAGAAACGAAGCGTCTAGTCGAGGCACAAAAGGAGATGAAGCTATTTACAAATGTGAAACAGTCATTTCAATATTGGGATTTAAGTTTCGCGCTTCAGTACACGAAGAAACAACCAGACGACAGTTAGTTATACTTACTTGATATCTTATCATTTTGGAATCACATTGAAGTCAGTGTCACTAACATTGGATAGTTCTGATGATGATGAAGTCAGTAGTAGTATTAGTAGTCATTCCAAAGATAACAACTTGAAACAACAACAT]
consensusID : consensus_10151#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence
[GTCACTGAGTTATGACTTTGGGTCCAATTAATTTAAGTGGGACTACCACCGTAAAACTGAACTTCCCTTAGTTCCCTTTAACACAACGAACTTAAATTACACTGTATAATGGGATAGGCTTACCAACTCCTCGAGGCAGTGGGACGACTGGATATGTTCAAAAAAATCTGCCTATCATTATTAATACCAAACATCACAACCCCTACAAAACAGGGGAGGACTTAAATACAGCAGATGCTCTGCTGTTTAAGGAACCAAATAAACAAATACTAGAGCATGACCGGAAACGAAAAATCGAAGTGAAATGTTTTGAAATGGAACAGGAAATGGAGGAAC]
[+] EMBL CD162312 [GTCACTGAGTTATGACTTTGGGTCCAATTAATTTAAGTGGGACTACCACCGTAAAACTGAACTTCCCTTAGTTCCCTTTAACACAACGAACTTAAATTACACTGTATAATGGGATAGGCTTACCAACTCCTCGAGGCAGTGGGACGACTGGATATGTTCAAAAAAATCTGCCTATCATTATTAATACCAAACATCACAACCCCTACAAAACAGGGGAGGACTTAAATACAGCAGATGCTCTGCTGTTTAAGGAACCAAATAAACAAATACTAGAGCATGACCGGAAACGAAAAATCGAAGTGAAATGTTTTGAAATGGAACAGGAAATGGAGGAAC]
consensusID : consensus_10151#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 204 fasta sequence
[ATATCAAGTAAGTATAACTAACTGTCGTCTGGTTGTTTCTTCGTGTACTGAAGCGCGAAACTTAAATCCCAATATTGAAATGACTGTTTCACATTTGTAAATAGCCTAGAACATAATCGTGGTTTAAAAGTTAATAACGGGACTACTGAGTAAGTGATGTACAAGAGAACATTAATTTCACTTGGAATTCTCACTTATTTGTTA]
[+] EMBL CD139585 [ATATCAAGTAAGTATAACTAACTGTCGTCTGGTTGTTTCTTCGTGTACTGAAGCGCGAAACTTAAATCCCAATATTGAAATGACTGTTTCACATTTGTAAATAGCCTAGAACATAATCGTGGTTTAAAAGTTAATAACGGGACTACTGAGTAAGTGATGTACAAGAGAACATTAATTTCACTTGGAATTCTCACTTATTTGTTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10151#0 CTATGTGACTCATCTAAGGCTCTCGATGTGATTTTTATAGTTCGCACTAAGGTTTGTTCA 60
consensus_10151#2 ------------------------------------------------------------
consensus_10151#1 ------------------------------------------------------------
consensus_10151#3 ------------------------------------------------------------
consensus_10151#0 TTGTACGTCATTTGATCCCTGTCATGGTTTTTTTATGGGTTTTATATGTTTGATGAGTTT 120
consensus_10151#2 ------------------------------------------------------------
consensus_10151#1 --------------------TTGAACACGGGCAAAATTGCTACCGAAAGGGACCCATGAA 40
consensus_10151#3 --------------------------------ATATCAAGTAAGTATAACTAACTGTCGT 28
consensus_10151#0 GCCCACATTTTCTTTTGTTCTCTGTTCCGCTTTTCGTGGTGAAAGGTGGGACTACCA-CC 179
consensus_10151#2 ---GTCACTGAGTTATGACTTTGGGTCCAATTAATTT------AAGTGGGACTACCA-CC 50
consensus_10151#1 AATGCCGCTGTAA-ATATCCTTAAAAACACAATCTTT-----AAAGAGGCACTGGGAATC 94
consensus_10151#3 CTGGTTGTTTCTTCGTGTACTGAAGCGCGAAACTT-----------AAATCCCAATATTG 77
* * * * * *
consensus_10151#0 GTAAAACTGAACTTCCCTTA-GTTCCCTTTAACACAACGTACTTCAATTACAATGTATAA 238
consensus_10151#2 GTAAAACTGAACTTCCCTTA-GTTCCCTTTAACACAACGAACTTAAATTACACTGTATAA 109
consensus_10151#1 GGGGAACAATTTCNGGATGG-AAATTCCGTAGAGTTGGCTGTTCAGCGGAAAAAAGATGA 153
consensus_10151#3 AAATGACTGTTTCACATTTGTAAATAGCCTAGAACA---TAATCGTGGTTTAAAAGTTAA 134
** * ** * * * *
consensus_10151#0 TGGGATAGGCTTACCAACTCCTCGAGGCAGTGGGACGAATGGATAT-GTTCAGAAAAATC 297
consensus_10151#2 TGGGATAGGCTTACCAACTCCTCGAGGCAGTGGGACGACTGGATAT-GTTCAAAAAAATC 168
consensus_10151#1 CGC-AGAAACGAAGCGTCTAGTCGAGGCACAAAAGGAGATGAAGCT-ATTTACAAATGTG 211
consensus_10151#3 TA--ACGGGACTACTGAGTAAGTGATGTACAAGAGAACATTAATTTCACTTGGAATTCTC 192
* * * ** * * * * * * ** *
consensus_10151#0 TGGCTTTCATTAGTAATTTCAAAGAGCAAAACCC---CTACAAAACAGAGGAGGACTTAA 354
consensus_10151#2 TGCCTATCATTATTAATACCAAACATCACAACCC---CTACAAAACAGGGGAGGACTTAA 225
consensus_10151#1 AAACAGTCATT-TCAATATTGGGATTTAAGTTTCGCGCTTCAGTACACGAAGAAACAACC 270
consensus_10151#3 ACTTATTTGTTA------------------------------------------------ 204
* **
consensus_10151#0 AGAGAGCAGAT-GCTCTGCTGTTTAAGGAACCAAATAAAGAAATACTAGAGCATGAACGG 413
consensus_10151#2 ATACAGCAGAT-GCTCTGCTGTTTAAGGAACCAAATAAACAAATACTAGAGCATGACCGG 284
consensus_10151#1 AGACGACAGTTAGTTATACTTACTTGATATCTTATCATTTTGGAATCACATTGAAGTCAG 330
consensus_10151#3 ------------------------------------------------------------
consensus_10151#0 AAACGAAAAATCGAAGTGAAATGTTTTGA-AATGGAACAGGAAATGGAGGAACAAGGTTA 472
consensus_10151#2 AAACGAAAAATCGAAGTGAAATGTTTTGA-AATGGAACAGGAAATGGAGGAAC------- 336
consensus_10151#1 TGTCACTAAC----ATTGGATAGTTCTGATGATGATGAAGTCAGTAGTAGTATTAGTAGT 386
consensus_10151#3 ------------------------------------------------------------
consensus_10151#0 CACGCAAAGCGAAATCGAATTTAGGGTCAGTGGATTTCGGAAAAAGTTGCTGGATGAGTT 532
consensus_10151#2 ------------------------------------------------------------
consensus_10151#1 CATTCCAAAGATAACAACTTGAAACAACAACAT--------------------------- 419
consensus_10151#3 ------------------------------------------------------------
consensus_10151#0 AAAGGCCTCCGAAATAAAAAAAACTCCCAATGTGGAGCCATTCGAAATCTCTCAGTCTGA 592
consensus_10151#2 ------------------------------------------------------------
consensus_10151#1 ------------------------------------------------------------
consensus_10151#3 ------------------------------------------------------------
consensus_10151#0 ACACGGCAAATTGCTACCGAAAGGGACCCATGAAAATGCCGCTGTAAATATCCTTAAAAA 652
consensus_10151#2 ------------------------------------------------------------
consensus_10151#1 ------------------------------------------------------------
consensus_10151#3 ------------------------------------------------------------
consensus_10151#0 CACAATTTTTAAAGAGGCACTGGGAATCGGGGAACAATTTCAGGATGGAAATTCCGTAGA 712
consensus_10151#2 ------------------------------------------------------------
consensus_10151#1 ------------------------------------------------------------
consensus_10151#3 ------------------------------------------------------------
consensus_10151#0 GTTGGCTGTTCAGCGGAAAAAAGATGACGCAGAAACGAAGCGTCTAGTCGAGGCACAAAA 772
consensus_10151#2 ------------------------------------------------------------
consensus_10151#1 ------------------------------------------------------------
consensus_10151#3 ------------------------------------------------------------
consensus_10151#0 GGAGATGAAAACATTGGATAGTTCTGATGATGATGAAGTCAGTAGTAGTATTAGTAGTCA 832
consensus_10151#2 ------------------------------------------------------------
consensus_10151#1 ------------------------------------------------------------
consensus_10151#3 ------------------------------------------------------------
consensus_10151#0 TTCCAAAGATAACAACTTGAAACAACAACATAAGAGGAAGAAAAAGGAGAAAAAGAAAAA 892
consensus_10151#2 ------------------------------------------------------------
consensus_10151#1 ------------------------------------------------------------
consensus_10151#3 ------------------------------------------------------------
consensus_10151#0 GAAATCAGTTAAAAAAGAAAACATTCACAATCTGGCGATGATGATAACGATGGACGAGCT 952
consensus_10151#2 ------------------------------------------------------------
consensus_10151#1 ------------------------------------------------------------
consensus_10151#3 ------------------------------------------------------------
consensus_10151#0 GTACAGGGTCGTGGTGAATTTAATTTCACTTCAAGTTCTATGACATATCATCACACAAAT 1012
consensus_10151#2 ------------------------------------------------------------
consensus_10151#1 ------------------------------------------------------------
consensus_10151#3 ------------------------------------------------------------
consensus_10151#0 GATGAACGAAGTCGTCGTAAACAATATCATGAA 1045
consensus_10151#2 ---------------------------------
consensus_10151#1 ---------------------------------
consensus_10151#3 ---------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||