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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10179#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1070 fasta sequence
[TTATTTAATAAAGCGCTCCGTTTAGAACTGGTTCGGTCGTGATGTGGATTGCCAGGAAATGACCAATACTGGTGTGTTTCATTTGGATATGCCGGAAGCCCCAAGTTATGACGACAGTGAAGAGAATTCCCACGATTATTGCTCGACAAATGGGGGGGTAGAGGATGAGTTTCTTGAACACGGCCCACTTAAGCCAGAGGAACTCGATGAAAATATTAAAACAGTTGAAATTTGCGAAGAGACGGTGAATCCTGGTCAACCTAAAGTCCGTCCACACGATTTCCAACTTTTGAAAGTCCTTGGGAAAGGTGGTTATGGAAAAGTTTTTCTTGCACGCAAAATCGACACTGGCCAGACTTATGCCATGAAAGTTTTAAAAAAAGCGTCGATTGTGACCAATGCAAAGGATACTGCACACACTAAAAGCGAGAGAAATATACTCGAAATGATTAAACATCCATTTCTAGTTCAATTGCATT-TTGCTTTCCAATCCCCTGGGAAGCTTTACCTAGTTTTGGAGTTTCTTGCTGGAGGTGAGCTGTTCA-TGCAACTTGAGAAAGAGGGAGTGTTCATGGAAGATCAAGCCAGTTTTTATTTGGCCGAAATAACTCTTGCCATTGGTCATCTTCATTCAATGGGAATTGTTTATCGAGATTTGAAACCCGAAAATGTACTTTTAGACCATCAAGGTCATGTTAAACTAACGGATTTTGGATTGTCTAAAGAGAGAGTTGATCGCGATCATTTAACTCACACATTCTGCGGGACTATTGAGTACATGGCTCCCGAAATACTGTTACG-TCAAGGACACGGAAGGGCCGTTGATTGGTGGAGTCTTGGCACGCTTATGTATGATATGCTTTCGGGATCTCCTCCATTTACAGGCGATGATAGAAGACAAACTATTGACTTGATATTACGAGGTGATTTTATACCTGTACCTTATTTGAGTCGAGAAGCCGTATCACTTATTTCAAAACTTTTAGTTGTTGATGTCAGTAGACGCCTTGGTTCTGGTCCATCTGATTCCGAGGCGATCAAAATGCATCCATTCTTTCGTAATACTGACT]
[+] EMBL CD201310 [TTATTTAATAAAGCGCTCCGTTTAGAACTGGTTCGGTCGTGATGTGGATTGCCAGGAAATGACCAATACTGGTGTGTTTCATTTGGATATGCCGGAAGCCCCAAGTTATGACGACAGTGAAGAGAATTCCCACGATTATTGCTCGACAAATGGGGGGGTAGAGGATGAGTTTCTTGAACACGGCCCACTTAAGCCAGAGGAACTCGATGAAAATATTAAAACAGTTGAAATTTGCGAAGAGACGGTGAATCCTGGTCAACCTAAAGTCCGTCCACACGATTTCCAACTTTTGAAAGTCCTTGGGAAAGGTGGTTATGGAAAAGTTTTTCTTGCACGCAAAATCGACACTGGCCAGACTTATGCCATGAAAGTTTTAAAAAAAGCGTCGATTGTGACCAATGCAAAGGATACTGCACACACTAAAAGCGAGAGAAATATACTCGAAATGATTAAACATCCATTTCTAGTTCAATTGCATT TTGCTTTCCAATCCCCTGGGAAGCTTTACCTAGTTTTGGAGTTTCTTGCTGGAGGTGAGCTGTTCATTGC ACTTGAGAAAGAGGGAGTGTTCATGGAAGATCAAGCCAGTTTTTATTTGGCCGANATAACTCTTGCCATTGG ]
[-] EMBL CD122953 [ TTTAGAACTGGTTCGGTCGTGATGTGGATTGCCAGGAAATGACCAATACTGGTGTGTTTCATTTGGATATGCCGGAAGCCCCAAGTTATGACGACAGTGAAGAGAATTCCCACGATTATTGCTCGACAAATGGGGGCGTAGAGGATGAGTTTCTTGAACACGGCCCACTTAAGCCAGAGGAACTCGATGAAAATATTAAAACAGTTGAAATTTGCGAAGAGACGGTG ]
[+] EMBL CD165541 [ TGACGACAGTGAAGAGAATTCCCACGATTATTGCTCGACAAATGGGGGGGTAGAGGATGAGTTTCTTGAACACGGCCCACTTAAGCCAGAGGAACTCGATGAAAATATTAAAACAGTTGAAATTTGCGAAGAGACGGTGAATCCTGGTCAACCTAAAGTCCGTCCACACGATTTCCAACTTTTGAAAGTCCTTGGGAAAGGTGGTTATGGAAAAGTTTTTCTTGCACGCAAAATCGACACTGGCCAGACTTATGCCATGAAAGTTTTAAAAAAAGCGTCGATTGTGACCAATGCAAAGGATACTGCACACACTAAAAGCGAGAGAAATATACTCGAAATGATTAAACATCCATTTCTAGTTCAATTGCATT TTGCTTTCCAATCCCCTGGGAAGCTTTACCTAGTTTTGGAGTTTCTTGCTGGAGGTGAGCTGTTCA TGCAACTTGAGAAAGAGGGAGTGTTCATGGAAGATCAAGCCAGTTTTTATTTGGCCGAAATAACTCTTGCCATTGGTCATCTTCATTCAATGGGAATTGTTTATCGAGATTTGAAACCCGAAAATGTACTTTTAGACCATCAAGGTCATGTTAAACTAACGGATTTTGGATTGTCTAAAGAGAGAGTTGATCGCGATCATTTAACTCACACATTCTGCGGGACTATTGAGTACATGGCTCCCGAAATACTGTTACGTTCAA GACACCGAATGGCCGTTGATTtg ]
[+] EMBL CD165548 [ TGACGACAGTGAAGAGAATTCCCACGATTATTGCTCGACAAATGGGGGGGTAGAGGATGAGTTTCTTGAACACGGCCCACTTAAGCCAGAGGAACTCGATGAAAATATTAAAACAGTTGAAATTTGCGAAGAGACGGTGAATCCTGGTCAACCTAAAGTCCGTCCACACGATTTCCAACTTTTGAAAGTCCTTGGGAAAGGTGGTTATGGAAAAGTTTTTCTTGCACGCAAAATCGACACTGGCCAGACTTATGCCATGAAAGTTTTAAAAAAAGCGTCGATTGTGACCAATGCAAAGGATACTGCACACACTAAAAGCGAGAGAAATATACTCGAAATGATTAAACATCCATTTCTAGTTCAATTGCATT TTGCTTTCCAATCCCCTGGGAAGCTTTACCTAGTTTTGGAGTTTCTTGCTGGAGGTGAGCTGTTCA TGCAACTTGAGAAAGAGGGAGTGTTCATGGAAGATCAAGCCAGTTTTTATTTGGCCGAAATAACTCTTGCCATTGGTCATCTTCATTCAATGGGAATTGTTTATCGAGATTTGAAACCCGAAAATGTACTTTTAGACCATCAAGGTCATGTTAAACTAACGGATTTTGGATTGTCTAAA AGAGAGTTGATCGCGATCATTTAACTCACACATTCTGCGGGACTATTGAGTACATGGCGTCCGGAATACTGTTACG TCAAGGGCACGAANGGGCCGTTGATTGG ]
[+] EMBL CD165162 [ TACTGCACACACTAAAAGCGAGAGAAATATACTCGAAATGATTAAACATCCATTTCTAGTTCAATTGCATT TTGCTTTCCAATCCCCTGGGAAGCTTTACCTAGTTTTGGAGTTTCTTGCTGGAGGTGAGCTGTTCA TGCAACTTGAGAAAGAGGGAGTGTTCATGGAAGATCAAGCCAG TTTTATTTGGCCGAAATAACTCTTGCCATTGGTCATCTTCATTCAATGGGAATTGTTTATCGAGATTTGAAACCCGAAAATGTACTTTTAGACCATCAGGNTCATGTTAAACTAACGGATTTTGGATTGTCTAAAGAGAGAGTTGATCGCGATCATTTAACTCACACATTtc ]
[-] EMBL CD165068 [ ACTGCACACACTAAAAGCGAGAGAAATATACTCGAAATGATTAAACATCCATTTCTAGTTCAA TGCATTNTTGCTTTCCAATCCNCTGGGAAGCTTTACCTAGTTTTGGAGTTTCTTGCTGGAGGTGAGCTGTTCA TGCAACTTGAGAAAGAGGGAGTGTTCATGGAAGATCAAGCCAGTTTTTATTTGGCCGAAATAACTCTTGCCATTGGTCATCTTCATTCAATGGGAATTGTTTATCGAGATTTGAAACCCGGAAATGTACTTTTAGACCATCAAGGTCATGTTAAACTAACGGATTTTGGATTGTCTAAAGAGAGAGTTGATCGCGATCATTTAACTCACACATTCTG ]
[+] EMBL CD124513 [ AGCTTTACCTAGTTTTGGAGTTTCTTGCTGGAGGTGAGCTGTTCA TGCAACTTGAGAAAGAGGGAGTGTTCATGGAAGATCAAGCCAGTTTTTATTTGGCCGAAATAACTCTTGCCATTGGTCATCTTCATTCAATGGGAATTGTTTATCGAGATTTGAAACCCGAAAATGTACTTTTAGACCATCAAGGTCATGTTAAACTAACGGATTTTGGATTGTCTAAAGAGAGAGTTGATCGCGATCATTTAACTCACACATTCTGCGGGACTATTGAGTACATGGCTCCCGAAATACTGTTACG TCAAGGACACGGAAGGGCCGTTGATTGGTGGAGTCTTGGCACGCTTATGTATGATATGCTTTCGGGATCTCCTCCATTTACAGGCGATGATAGAAGACAAACTATTGACTTGATATTACGAGGTGATTTTATACCTGTACCT ]
[+] EMBL CD118970 [ AGCTTTACCTAGTTTTGGAGTTTCTTGCTGGAGGTGAGCTGTTCA TGCAACTTGAGAAAGAGGGAGTGTTCATGGAAGATCAAGCCAGTTTTTATTTGGCCGAAATAACTCTTGCCATTGGTCATCTTCATTCAATGGGAATTGTTTATCGAGATTTGAAACCCGAAAATGTACTTTTAGACCATCAAGGTCATGTTAAACTAACGGATTTTGGATTGTCTAAAGAGAGAGTTGATCGCGATCATTTAACTCACACATTCTGCGGGACTATTGAGTACATGGCTCCCGAAATACTGTTACG TCAAGGACACGGAAGGGCCGTTGATTGGTGGAGTCTTGGCACGCTTATGTATGATATGCTTTCGGGATCTCCTCCATTTACAGGCGATGATAGAAGACAAACTATTGACTTGATATTACGAGGTGATTTTATACCTGTACCTTATTTGAGTCGAGAAGCCGTATCACTTATTTCAAAACT ]
[+] EMBL CD118980 [ AGCTTTACCTAGTTTTGGAGTTTCTTGCTGGAGGTGAGCTGTTCA TGCAACTTGAGAAAGAGGGAGTGTTCATGGAAGATCAAGCCAGTTTTTATTTGGCCGAAATAACTCTTGCCATTGGTCATCTTCATCCAATGGGAATTGTTTATCGAGATTTGAAACCCGAAAATGTACTTTTAGACCATCAAGGTCATGTTAAACTAACGGATTTTGGATTGTCTAAAGAGAGAGTTGATCGCGATCATTTAACTCACACATTCTGCGGGACTATTGAGTACATGGCTCCCGAAATACTGTTACG TCAAGGACACGGAAGGGCCGTTGATTGGTGGAGTCTTGGCACGCTTATGTATGATATGCTTTCGGGATCTCCTCCATTTACAGGCGATGATAGAAGACAAACTATTGACTTGATATTACGAGGTGATTTTATACCTGTACCTTATTTGAGTCGAGAAGCCGTATCACTTATTTCAAAACT ]
[+] EMBL CD124502 [ AGCTTTACCTAGTTTTGGAGTTTCTTGCTGGAGGTGAGCTGTTCA TGCAACTTGAGAAAGAGGGAGTGTTCATGGAAGATCAAGCCAGTTTTTATTTGGCCGAAATAACTCTTGCCATTGGTCATCTTCATTCAATGGGAATTGTTTATCGAGATTTGAAACCCGAAAATGTACTTTTAGACCATCAAGGTCATGTTAAACTAACGGATTTTGGATTGTCTAAAGAGAGAGTTGATCGCGATCATTTAACTCACACACTCTGCGGGACTATTGAGTACATGGCTCCCGAAATACTGTTACG TCAAGGACACGGAAGGGCCGTTGATTGGTGGAGTCTTGGCACGCTTATGTATGATATGCTTTCGGGATCTCCTCCATTTACAGGCGATGATAGAAGACAAACTATTGACTTGATATTACGAGGTGATTTTATACCTGTACCT ]
[-] EMBL CD157149 [ TGGAGTTTCTTGCTGGAGGTGAGCTGTTCA TGCAACTTGAGAAAGAGGGAGTGTTCATGGAAGATCAAGCCAGTTTTTATTTGGCCGAAATAACTCTTGCCATTGGTCATCTTCATTCAATGGGAATTGTTTATCGAGATTTGAAACCCGAAAATGTACTTTTAGACCATCAAGGTCATGTTAAACTAACGGATTTTGGATTGTCTAAAGAGAGAGTTGATCGCGATCATTTAACTCACACATTCTGCGGGACTATTGAGTACATGGCTCCCGAAATACTGTTACG TCAAGGACACGGAAGGGCCGTTGATTGGTGGAGTCTTGGCACGCTTATGTATGATATGCTTTCGGGATCTCCTCCATTTACAGGCGATGATAGAAGACAAACTATTGACTTGATATTACGAGGTGATTTTATACCTGTACCTTATTTGAGTCGAGAAGCCGTATCACTTATTTCAAAACTT ]
[-] EMBL CD119237 [ TTATTTGNCCGAAATAACTCTTGCCATTGGTCATCTTCATTCAATGGGAATTGTTAATCGAGATTTGAAACCCGAAAATGTACTTTTAGACCATCAAGGTCATGTTAAACTAACGGATTTTGGATTGTCTAAAGAGAGAGTTGATCGCGATCATTTAACTCACACATTCTGCGGGACTATTGAGTACATGGCTCCCGAAATACTGTTACG TCAAGGACACGGAAGGGCCGTTGATTGGTGGAGTCTTGGCACGCTTATGTATGATATGCTTTCGGGATCTCCTCCATTTACAGGCGATGATAGAAGACAAACTATTGACTTGATATTACGAGGTGATTTTATACCTGTACCTTATTTGAGTCGAGAAGCCGTATCACTTATTTCAAAACTT ]
[-] EMBL CD171003 [ ACGGATTTTGGATTGCCTAAAGGGAGAGTTGATCGCGATCATTTAACTCACACATTCTGCGGGACTATTGAGTACATGGCTCCCGAAATACTGTTACG TCAAGGACACGGAAGGGCCGTTGATTGGTGGAGTCTTGGCACGCTTATGTATGATATGCTTTCGGGATCTCCTCCATTTACAGGCGATGATAGAAGACAAACTATTGACTTGATATTACGAGGTGATTCTATACCTGTACCTTATTTGAGTCGAGAAGCCGTATCACTTATTTCAAAACTTTTAGTTGTTGATGTCAGTAGACGCCTTGGTTCTGGTCCATCTGATTCCGAGGCGATCAAAATGCATCCATTCTTTCGTAATACTGACT]
consensusID : consensus_10179#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 446 fasta sequence
[AAAAAGCGTCGATTGTGACCAATGCAAAGGATACTGCACACACTAAAAGCGAGAGAAATATACTCGAAATGATTAAAGTACATCCCCAATGTTATATTTTATGTGTAGCATCCATTTCTAGTTCAATTGCATTTTGCTTTCCAATCCCCTGGGAAGCTNACCTAGTTTTGGAGTTTCTTGCTGGAGGTGAGCTGTTCATGCAACTTGAGAAAGAGGGAGTGTTCATGGAAGATCAAGCCAGTTTTTATTTGGCCGAAATAACTCTTGCCATTGGTCATCTTCATTCAATGGGAATTGTTTATCGAGATTTGAAACCCGAAAATGTACTTTTAGACCATCAAGGTCATGTTAAACTAACGGATTTTGGATTGTCTAAAGAGAGAGTTGATCGCGATCATTTAACTCACACATTCTGCGGGACTATTGAGTACATGGCTCCCGAAATA]
[-] EMBL CD170680 [AAAAAGCGTCGATTGTGACCAATGCAAAGGATACTGCACACACTAAAAGCGAGAGAAATATACTCGAAATGATTAAAGTACATCCCCAATGTTATATTTTATGTGTAGCATCCATTTCTAGTTCAATTGCATTTTGCTTTCCAATCCCCTGGGAAGCTNACCTAGTTTTGGAGTTTCTTGCTGGAGGTGAGCTGTTCATGCAACTTGAGAAAGAGGGAGTGTTCATGGAAGATCAAGCCAGTTTTTATTTGGCCGAAATAACTCTTGCCATTGGTCATCTTCATTCAATGGGAATTGTTTATCGAGATTTGAAACCCGAAAATGTACTTTTAGACCATCAAGGTCATGTTAAACTAACGGATTTTGGATTGTCTAAAGAGAGAGTTGATCGCGATCATTTAACTCACACATTCTGCGGGACTATTGAGTACATGGCTCCCGAAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10179#0 TTATTTAATAAAGCGCTCCGTTTAGAACTGGTTCGGTCGTGATGTGGATTGCCAGGAAAT 60
consensus_10179#1 ------------------------------------------------------------
consensus_10179#0 GACCAATACTGGTGTGTTTCATTTGGATATGCCGGAAGCCCCAAGTTATGACGACAGTGA 120
consensus_10179#1 ------------------------------------------------------------
consensus_10179#0 AGAGAATTCCCACGATTATTGCTCGACAAATGGGGGGGTAGAGGATGAGTTTCTTGAACA 180
consensus_10179#1 ------------------------------------------------------------
consensus_10179#0 CGGCCCACTTAAGCCAGAGGAACTCGATGAAAATATTAAAACAGTTGAAATTTGCGAAGA 240
consensus_10179#1 ------------------------------------------------------------
consensus_10179#0 GACGGTGAATCCTGGTCAACCTAAAGTCCGTCCACACGATTTCCAACTTTTGAAAGTCCT 300
consensus_10179#1 ------------------------------------------------------------
consensus_10179#0 TGGGAAAGGTGGTTATGGAAAAGTTTTTCTTGCACGCAAAATCGACACTGGCCAGACTTA 360
consensus_10179#1 ------------------------------------------------------------
consensus_10179#0 TGCCATGAAAGTTTTAAAAAAAGCGTCGATTGTGACCAATGCAAAGGATACTGCACACAC 420
consensus_10179#1 -----------------AAAAAGCGTCGATTGTGACCAATGCAAAGGATACTGCACACAC 43
*******************************************
consensus_10179#0 TAAAAGCGAGAGAAATATACTCGAAATGATTAAA-------------------------- 454
consensus_10179#1 TAAAAGCGAGAGAAATATACTCGAAATGATTAAAGTACATCCCCAATGTTATATTTTATG 103
**********************************
consensus_10179#0 -----CATCCATTTCTAGTTCAATTGCATTTTGCTTTCCAATCCCCTGGGAAGCTTTACC 509
consensus_10179#1 TGTAGCATCCATTTCTAGTTCAATTGCATTTTGCTTTCCAATCCCCTGGGAAGCTN-ACC 162
************************************************** ***
consensus_10179#0 TAGTTTTGGAGTTTCTTGCTGGAGGTGAGCTGTTCATGCAACTTGAGAAAGAGGGAGTGT 569
consensus_10179#1 TAGTTTTGGAGTTTCTTGCTGGAGGTGAGCTGTTCATGCAACTTGAGAAAGAGGGAGTGT 222
************************************************************
consensus_10179#0 TCATGGAAGATCAAGCCAGTTTTTATTTGGCCGAAATAACTCTTGCCATTGGTCATCTTC 629
consensus_10179#1 TCATGGAAGATCAAGCCAGTTTTTATTTGGCCGAAATAACTCTTGCCATTGGTCATCTTC 282
************************************************************
consensus_10179#0 ATTCAATGGGAATTGTTTATCGAGATTTGAAACCCGAAAATGTACTTTTAGACCATCAAG 689
consensus_10179#1 ATTCAATGGGAATTGTTTATCGAGATTTGAAACCCGAAAATGTACTTTTAGACCATCAAG 342
************************************************************
consensus_10179#0 GTCATGTTAAACTAACGGATTTTGGATTGTCTAAAGAGAGAGTTGATCGCGATCATTTAA 749
consensus_10179#1 GTCATGTTAAACTAACGGATTTTGGATTGTCTAAAGAGAGAGTTGATCGCGATCATTTAA 402
************************************************************
consensus_10179#0 CTCACACATTCTGCGGGACTATTGAGTACATGGCTCCCGAAATACTGTTACGTCAAGGAC 809
consensus_10179#1 CTCACACATTCTGCGGGACTATTGAGTACATGGCTCCCGAAATA---------------- 446
********************************************
consensus_10179#0 ACGGAAGGGCCGTTGATTGGTGGAGTCTTGGCACGCTTATGTATGATATGCTTTCGGGAT 869
consensus_10179#1 ------------------------------------------------------------
consensus_10179#0 CTCCTCCATTTACAGGCGATGATAGAAGACAAACTATTGACTTGATATTACGAGGTGATT 929
consensus_10179#1 ------------------------------------------------------------
consensus_10179#0 TTATACCTGTACCTTATTTGAGTCGAGAAGCCGTATCACTTATTTCAAAACTTTTAGTTG 989
consensus_10179#1 ------------------------------------------------------------
consensus_10179#0 TTGATGTCAGTAGACGCCTTGGTTCTGGTCCATCTGATTCCGAGGCGATCAAAATGCATC 1049
consensus_10179#1 ------------------------------------------------------------
consensus_10179#0 CATTCTTTCGTAATACTGACT 1070
consensus_10179#1 ---------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||