These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10180#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 943 fasta sequence [CGGCCAANAATTTTGCACGAGGTTCACATTTCGTAACTGAACTCATTCTATCATGATTCATTCTATCTTCATTTTGGTGTTTGTTGTACAGAGCGTAATTTGTTCAACGG-AATCAAACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCAACAATAGCTGAATGTGATACATGTTTGGCA-GGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTAAAGATTTATATGATTGCAGCAG-AACAAATATGTCAGTCTATTGCATCAG-AAAGTCTAAAAAACACTTGCCAAGCATATGTGAATAATTACCTTAATAAAACTTTGGATGTACTGGCTAAAGCAGTGAATCCTGATTACATTTGCAAGGCATTACAAGCTTGTGCAAATGATACAAGATCTTCGTCCACTCGAAACTCCGGAGATAGTATACTGTGTGAAGGATGCAAATCTGTTTATAATAGAATACAAAGTATTTTTACTGACCACACAGTAATAAAAGAAATGAAATCTTCAGTGAAAGTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTCAAAAATATATGGATCAAGCAATTACATATTTTGAACATCATAGAGCAGATCAAACATGTTATGCACTTTGCACTTTCCTAAAACTTTTCAAACTTATCCTCTACTAAATGGATATTACATGTGATTG-AAATTATATAACTAATCGTTTTTTTTGTCTTCCTATAACCGTGTTTCTTAATAATAAAAATTGCGTTGGATTNTTTCTCTACTTTTGATGTACTTTTAAAATGTTACCTAATGTTAGTCTATAAATGGTTGGCTTATAGATCAGTTTCTTC-ACTTTAT-AACATTT-ANAATT-ATT-AACAT-AGTATATGGCCTTAATCATTTACATATCATATTGTTATGTTTTACTGAAT] [+] EMBL CD080846 [CGGCCAANAATTTTGCACGAGGTTCACATTTCGTAACTGAACTCATTCTATCATGATTCATTCTATCTTCATTTTGGTGTTTGTTGTACAGAGCGTAATTTGTTCAACGG AATCAAACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCAACAATAGCTGAATGTGATACATGTTTGGCA GGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTAAAGATTTATATGATTGCAGCAG AACAAATATGTCAGTCTATTGCATCAG AAAGTCTAAAAAACACTTGCCAAGCATATGTGAATAATTACCTTAATAAAACTTTGGATGTACTGGCTAAAGCAGTGAATCCTGATTACATTTGCAAGGCATTACAAGCTTGTGCAAATGATACAAGATCTTCGTCCACTCGAAACTCCGGAGATAGTATACTGTGTGAAGGATGCAAATCTGTTTATAATAGAATACAAAGTATTTTTACTGACCACACAGTAATAAAAGAAATGAAATCTTCAGTGAAAGTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTCAAAAATATATGGATCAAGCAATTACATATTTTGAACATCATAGAGCAGATCANACATGTTATGCACTTTGCACTTTCCTAAAACTTTTCAAACTTATCCTCTACTAAATGGATATTACATGTGATTG AAATTATATAACT ATCGTTNTTTTTGTCTT CTATAA CGNNGTTCTAAAT ATAAAAt ] [+] EMBL AA559707 [ ATCATGATTCATTCTATCTTCATTTTGGTGTTTGTTGTACAGAGCGTAATTTGTTCAACGG AATCAAACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCANCAATAGCTGAATGTGATACATGTTTGGCA G ] [+] EMBL AI977047 [ TTCATTCTATCTTCATTTTGGTGTTTGTTGTACAGAGCGTAATTTTTTCAACGG AATCAAACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCAACAATAGCTGAATGTGATACATGTTTGGCA GGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTAAAGATTTATATGATTGCAGCAG AACAAATATGTCAGTCTATTGCATCAG AAAGTCTAAAAAACACTTGCCAAGCATATGTGAATAATTACCTTAATAAAACTTTGGATGTACTGGCTAAAGCAGTGAATCCTGATTACATTTGCAAGGCATTACAAGCTTGTGCAAATGATACAAGATCTTCGTCCACTCGAAACTCCGGAGATAGTATACTGTGTGAAGGATGCAAATCTGTTTATAATAGAATACAAAGTATTTTTACTGACCACACAGTAATAAAAGAAATGAAATCTTCAGTGAAAGTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGAT ] [+] EMBL BF936902 [ GTTTGTTGTACAGAGCGTAATTTGTTCAACGG AATCAAACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCAACAATAGCTGAATGTGATACATGTTTGGCA GGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTAAAGATTTATATGATTGCAGCAG AACAAATATGTCAGTCTATTGCATCAG AAAGTCTAAAAAACACTTGCCAAGCATATGTGAATAATTACCTTAATAAAACTTTGGATGTACTGGCTAAAGCAGTGAATCCTGATTACATTTGCAAGGCATTACAAGCTTGTGCAAATGATACAAGATCTTCGTCCACTCGAAACTCCGGAGATAGTATACTGTGTGAAGGATGCAAATCTGTTTATAATAGAATACAAAGTATTTTTACTGACCACACAGTAATAAAAGAAATGAAATCTTCAGTGAAAGTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTCAAAAATATATGGATCAAGCAATTACATATTTTGAACATCATAGAGCAGATCAAACATGTTATGCACTTTGCACTTTCCTAAAACTTTTCAAACTTATCCTCTACTAAATGGATATTACATGTGATTG AAAATATA ] [+] EMBL AA559389 [ TTTGTTGTACAGAGCGTAATTTGTTCAACGG AATCAAACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCANCAATAGCTGAATGTGATACATGTTTGGCA GGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTAAAGATTTATATGATTGCAGCAG AACAAATATGTCAGTCTATNGCATCAGAAAAGTCTAAAAAACACTTGCCAAGCATATGTGAATAATTNCCTTAATAAAACTTTGGATGTNCTGGCTAAAGCAGTGAATCCTGATTACNTTTGCAAGGCATTACAAGCTTGTGCAAATGATNCAAGATCTNCGTCCACTCGAAACTCCGGA ] [+] EMBL AA559791 [ TTCAACGGNAATCAAACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCANCAATAGCTGAATGTGATACATGTTTGGCAGGGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTAAAGATTTATATGATTGCAGCAGAAACAAATATGTCAGTCTATNGCATCAGAAAAGTCTAAAAAACACTTGCCAAGCATATGTGAATAATTACCTTAATAAAACTTTGGATGTACTGGCTAAAGCAGTGAATCCTGATTACATTTGCAAGGCATTA ] [+] EMBL CD077587 [ gaggAACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCAACAATAGCTGAATGTGATACATGTTTGGCA GGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTAAAGATTTATATGATTGCAGCAG AACAAATATGTCAGTCTATTGCATCAG AAAGTCTAAAAAACACTTGCCAAGCATATGTGAATAATTACCTTAATAAAACTTTGGATGTACTGGCTAAAGCAGTGAATCCTGATTACATTTGC AGGCATTACAAGCTTGTGCAAATGATACAAGATCTT ] [+] EMBL CD080166 [ AACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCAACAATAGCTGAATGTGATACATGTTTGGCA GGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTAAAGATTTATATGATTGCAGCAG AACAAATATGTCAGTCTATTGCATCAG AAAGTCTAAAAAACACTTGCCAAGCATATGTGAATAATTACCTTAATAAAACTTTGGATGTACTGGCTAAAGCAGTGAATCCTGATTACATTTGCAAGGCATTACAAGCTTGTGCAAATGATACAAGATCTTCGTCCACTCGAAACTCCGGAGATAGTATACTGTGTGAAGGATGCAAATCTGTTTATAATAGAATACAAAGTATTTTTACTGACCACACAGTAATAAAAGAAATGAAATCTTCAGTGAAAGTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTCAAAAATATATGGATCAAGCAATTACATATTTTGAACATCATAGAGCAGATCAAACATGTTATGCACTTTGCACTTTCCTAAAACTTTTCAAACTTATCCTCTACTAAATGGATATTACATGTGATTG AAAANATATAACTAATCGTTTTTTTTGTCTTCCTATAACCGTGTTTCTTAATAATAAAAATTGCGTTGGATTNTTTCTCTACTTTTGATGTACTTTTAAAATGTTACCTAATGTTAGTCTATAAATGGTTGGCTTATAGATCAGTTTCTTC ACTTTAT AACATTT ANAATT ATT AACAT AGTATATG ] [+] EMBL SM6601 [ AAAGCAGTGAATCCTGATTACATTTGCAAGGCATTACAAGCTTGTGCAAATGATAC AGATCTT ] [-] EMBL CD075786 [ TTACAAGCTTGTGCAAATGATACAAGATCTTCGTCCACTCGAAACTCCGGAGATAGTATACTGTGTGAAGGATGCAAATCTGTTTATAATAGAATACAAAGTATTTTTACTGACCACACAGTAATAAAAGAAATGAAATCTTCAGTGAAAGTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTCAAAAATATATGGATCAAGCAATTACATATTTTGAACATCATAGAGCAGATCAAACATGTTATGCACTTTGCACTTTCCTAAAACTTTTCAAACTTATCCTCTACTAAATGGATATTACATGTGATTGAAAATTATATAACTAATCGTTTTTTTTGTCTTCCTATAACCGTGTTTCTTAATAATAAAAATTGCGTTGTATTTTTTCTCTACTTTTGATGTACTTTTAAAATGTTACCTAATGTTAGTCTATAAATGTTTGGCTTATAGATCAGTTTCTTCAACTTTATAAACATTTAAAAATTAATTAAACATAAGTATAATGCCTTAATCATTTACATATCATATTGTTATGTTTTACTGAAT] consensusID : consensus_10180#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 914 fasta sequence [GTACGAGGAACATTTTACATTTCGTAACTGAACTCATTCTATCTTGATTCATTCTATCTTCATTTTGGTGTTTGTTGTACAGAGCGTAATTTGTTCAACGGAATCAAACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCAACAATAGCTGAATGTGATACATGTTTGGCAGGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTAAAGATTTATATGATTGCAGCAGAACAAATATGTCAGTCTATTGCATCAGAAAGTCTAAAAAACACTTGCCAAGCATATGTGAATAATTACCTTAATAAAACTTTGGATGTACTGGCTAAAGCAGTGAATCCTGATTACATTTGCAAGGCATTACAAGCTTGTGCAAATGATACAAGATCTTCGTCCACTCGAAACTCCGGAGATAGTATACTGTGTGAAGGATGCAAATCTGTTTATAATAGAATACAAAGTATTTTTACTGACCACACAGTAATAAAAGAAATGAAATCTTCAGTGAAAGTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTCAAAAATATATGGATCAAGCAATTACATATTTTGAACATCATAGAGCAGATCAAACATGTTATGCACTTTGCACTTTCCTAAAACTTTTCAAACTTATCCTCTACTAAATGGATATTACATGTGATTGAAAATTATATAACTAATCGTTTTTTTTGTCTTCCTATAACCGNNGTTCTTATAATAAAAATGCNNGTGATTTTTCCTACTTTTGATGACTNTTAAATGTACCCTATGTAGTCTATAATGGTGGGCTATGATCAGTTCTTCACTTATAACATTAAAAATATNANCATAGNTANGCCTATCATTACTATCAAATGNATGGTTACTGANAAA] [+] EMBL CD082170 [GTACGAGGAACATTTTACATTTCGTAACTGAACTCATTCTATCTTGATTCATTCTATCTTCATTTTGGTGTTTGTTGTACAGAGCGTAATTTGTTCAACGGAATCAAACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCAACAATAGCTGAATGTGATACATGTTTGGCAGGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTAAAGATTTATATGATTGCAGCAGAACAAATATGTCAGTCTATTGCATCAGAAAGTCTAAAAAACACTTGCCAAGCATATGTGAATAATTACCTTAATAAAACTTTGGATGTACTGGCTAAAGCAGTGAATCCTGATTACATTTGCAAGGCATTACAAGCTTGTGCAAATGATACAAGATCTTCGTCCACTCGAAACTCCGGAGATAGTATACTGTGTGAAGGATGCAAATCTGTTTATAATAGAATACAAAGTATTTTTACTGACCACACAGTAATAAAAGAAATGAAATCTTCAGTGAAAGTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTC AAAATATATGGATCAAGCAATTACATATTTTGAACATCATAGAGCAGATCANACATGTTATGCACTTTGCACTTTCCTAAAACTNTTCAAACTTATCCTCTACTAAATGGATATTACATGTGATTGAAAA TATATAACTAATCGNTNNTTNTGTCTTCCTATNACCGNNGTTCTTATAATAAAAATGCNNGTGATTTTTCCTACTTTTGATGACTNTTAAATGTACCCTATGTAGTCTATAATGGTGGGCTATGATCAGTTCTTCACTTATAACATTAAAAATATNANCATAGNTANGCCTATCATTACTATCAAATGNATGGTTACTGANAAA] [+] EMBL CD185894 [ CTGTGTGAAGGATGCAAATCTGTTTATAATAGAATACAAAGTATTTTTACTGACCACACAGTAATAAAAGAAATGAAATCTTCAGTGAAAGTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTCAGAAATATATGGATCAAGCAATTACATATTTTGAACATCATAGAGCAGATCAAACATGTTATGCACTTTGCACTTTCCTAAAACTTTTCAAATTTATCCTCTACTAAATGGATATTACATGTGATTGAAAATTATATAACTAATCGTTTTTTTCGTCTTCCTATAACCG ] [-] EMBL AI021775 [ AAGAAATGAAATCTTCAGTGAAAGTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTCAAAAATATATGGATCAAGCAATTACATA TTTGAACATCATAGAGCAGATCAAACATGTTATGCACTTTGCACTTTCCTAAAACTTTTCAAACTTATCCTCTACTAAATGGATATTACATGTGATTGAAAATTATATAACTAATCGTTTTTTTTGTCTTCCTATAA ] [-] EMBL AI021774 [ GAAATGAAATCTTCAGTGAAAGTGATATG TTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTCAAAAATATATGGATCAAGCAATTACATATTTTGAACATCATAGAGCAGATCAAACATGTTATGCACTTTGCACTTTCCTAAAACTTTTCAAACTTATCCTCTACTAAATGGATATTACATGTGATTGAAAATTATATAACTAATCGTTTTTTTTGTCTTCCTATAACCG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10180#0 CGGCCAANAATTTTGCACGAGG-----TTCACATTTCGTAACTGAACTCATTCTATCATG 55 consensus_10180#1 --------------GTACGAGGAACATTTTACATTTCGTAACTGAACTCATTCTATCTTG 46 * ****** ** *************************** ** consensus_10180#0 ATTCATTCTATCTTCATTTTGGTGTTTGTTGTACAGAGCGTAATTTGTTCAACGGAATCA 115 consensus_10180#1 ATTCATTCTATCTTCATTTTGGTGTTTGTTGTACAGAGCGTAATTTGTTCAACGGAATCA 106 ************************************************************ consensus_10180#0 AACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCAACAATAGCTGAATGT 175 consensus_10180#1 AACAAAATTAATTTACTTACTAAGGAAAATAAAGATGACAATTCAACAATAGCTGAATGT 166 ************************************************************ consensus_10180#0 GATACATGTTTGGCAGGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTA 235 consensus_10180#1 GATACATGTTTGGCAGGGATGAATTTAGTTCACTACATTCTTTCAGAAGATTATTGGGTA 226 ************************************************************ consensus_10180#0 AAGATTTATATGATTGCAGCAGAACAAATATGTCAGTCTATTGCATCAGAAAGTCTAAAA 295 consensus_10180#1 AAGATTTATATGATTGCAGCAGAACAAATATGTCAGTCTATTGCATCAGAAAGTCTAAAA 286 ************************************************************ consensus_10180#0 AACACTTGCCAAGCATATGTGAATAATTACCTTAATAAAACTTTGGATGTACTGGCTAAA 355 consensus_10180#1 AACACTTGCCAAGCATATGTGAATAATTACCTTAATAAAACTTTGGATGTACTGGCTAAA 346 ************************************************************ consensus_10180#0 GCAGTGAATCCTGATTACATTTGCAAGGCATTACAAGCTTGTGCAAATGATACAAGATCT 415 consensus_10180#1 GCAGTGAATCCTGATTACATTTGCAAGGCATTACAAGCTTGTGCAAATGATACAAGATCT 406 ************************************************************ consensus_10180#0 TCGTCCACTCGAAACTCCGGAGATAGTATACTGTGTGAAGGATGCAAATCTGTTTATAAT 475 consensus_10180#1 TCGTCCACTCGAAACTCCGGAGATAGTATACTGTGTGAAGGATGCAAATCTGTTTATAAT 466 ************************************************************ consensus_10180#0 AGAATACAAAGTATTTTTACTGACCACACAGTAATAAAAGAAATGAAATCTTCAGTGAAA 535 consensus_10180#1 AGAATACAAAGTATTTTTACTGACCACACAGTAATAAAAGAAATGAAATCTTCAGTGAAA 526 ************************************************************ consensus_10180#0 GTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTCAAAAATAT 595 consensus_10180#1 GTGATATGTTTACTTTATGCCGCAGATGAATCACAATGTGATAAAGTTCTTCAAAAATAT 586 ************************************************************ consensus_10180#0 ATGGATCAAGCAATTACATATTTTGAACATCATAGAGCAGATCAAACATGTTATGCACTT 655 consensus_10180#1 ATGGATCAAGCAATTACATATTTTGAACATCATAGAGCAGATCAAACATGTTATGCACTT 646 ************************************************************ consensus_10180#0 TGCACTTTCCTAAAACTTTTCAAACTTATCCTCTACTAAATGGATATTACATGTGATTGA 715 consensus_10180#1 TGCACTTTCCTAAAACTTTTCAAACTTATCCTCTACTAAATGGATATTACATGTGATTGA 706 ************************************************************ consensus_10180#0 AA-TTATATAACTAATCGTTTTTTTTGTCTTCCTATAACCGTGTTTCTTAATAATAAAAA 774 consensus_10180#1 AAATTATATAACTAATCGTTTTTTTTGTCTTCCTATAACCGNNGTTCTTA-TAATAAAAA 765 ** ************************************** ****** ********* consensus_10180#0 TTGCGTTGGATTNTTTCTCTACTTTTGATGTACTTTTAAAATGTTACCTAATGTTAGTCT 834 consensus_10180#1 T-GCNNGTGATTTTTCC--TACTTTTGATG-ACTNTTAAA-TGT-ACCCTATGT-AGTCT 818 * ** **** ** * *********** *** ***** *** *** **** ***** consensus_10180#0 ATAAATGGTTGGCTTATAGATCAGTTTCTTCACTTTATAACATTTANAATTATTAACATA 894 consensus_10180#1 ATAA-TGGTGGGCT-AT-GATCAGTT-CTTCACTT-ATAACATTAAAAAT-ATNANCATA 872 **** **** **** ** ******** ******** ******** * *** ** * **** consensus_10180#0 GTATATGGCCTTAATCATTTACATATCATATTGTTATGTTTTACTGAAT 943 consensus_10180#1 GN-TANGCCTATCATTACTATCAAAT-GNATGGTTAC----TGANAAA- 914 * ** * * * ** * * ** ** ** **** * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||