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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10186#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1689 fasta sequence
[AATCGATATTGTATACTCACCAGGTACTAATGGTAAATAGCTTACACTACAAGTACCATTTTTATTATCATCACATTGAATATCGGCTTTAGATGGTCCTTCAACGGAAAGTGACAATCCGCCTGCTCCAGCATCGCGTGTAATTAAAGTGAAATTTGATGGTTCTCCAGCACGACCACAAGATAATCCTGGTCCATAAGCTGTAACAATTCCAGATCCAACAGCTTCAACATAGAATCTGAAAGGACTACCTGGTATTGGTTGACCATTATAAGTTATTTCTAATTCATGGAGTCCAGGTTCATTTGGTTGAAATTGTGCTGTAACTGTTCCATCACCATTATCCAATAAAGTCGGATGTAGAATTCGACCACTTGGAGTACGAACCAAACCTTCCACATGACTAAATGTTGGGCCAACAGGTAGTTTAAAGTCAACTGGGTGATATCCTGTTGTGACCGTTGAAGACTGGACAGACTGCACAGATTGTACAGTTACATGTTGTACTCTTTGATCAGTTACATCATTCATTAGTTCTTCTGGGCTGACGGCTTTTTGGTTAAACCTTTCATTTGGTATAAGTTCACCGCCAAATCTTATCTCAACCAAATAATCACCACGAATTGGTGGTGTATAGTAAATATTAACTCGACCGTTTGGTGCTTCATGAATTTCAACATCGGCTGTTGCTCCAGATGGTGTAACAATACGACAAGTTAACTGTCCAACACCAGCTTGTTGTGTATTCACACTGATAACACATTCTTGACCAACAGGTATTCGGCTATCATTTCCATTTTCTATACGACACATATTAGATCGTCCAGATGGTGC-ACTGGTACTAGGAATGGACTTTCAGGAATTTCTTGCCCACCATATTTCACTCGTACAGTATGACGTCCAACAATCATTGGTGTATAATGACATACATATGTTCCATCTCCAACACCCACTACTTCTAATTGTAATGGTTGACCATCAGGATCCATTACTGATAATTCTAGGTCTCCGAGACCTGCATCTCTTGTATCTACTTGGAAAGAAGTCGGTTGAGTAGCTGGAAGTCCTAATGGACGAGTTGGATGAACGCCTTCACCTGTTACACGCACACGTTGTGGTTCAAAAGCTGGTAAGACATGTTGTGTGAATGGTGATCGAGCTACATGATTTCCTGCTTGTTTAACTTCAATTTGACATGGACCGTCGGTATCTGGAACATATGTCACATCATAGACACCTGGTTGATTTGGCCGTGGAACAACATGTGCCGGTGCTGTTCTTCCAACACGATCAACTGTTGCGACTTGGATAGGCGCATCTCCTGCCTGTGAAGCATCAACAGTAAAGTGAGCTGGTTGTTGCGCTCGTGCTCCTCTGGGCTCTAGACCTGGACCATAACAACGAACACGAGTTGGGTCAACCACATCTCGTATGGGAACTTGGAATGGACTACCTGGAATATTCATATCGTTAAATTTAACGAAGATATCATATGTTCCTGCCCGTGTTGGTAAGTAGTCCACTGTACATGTTCCATCTTTATTATCTTGACATTGTATTTGAGCGTCAGCTGGCCCTTCTAAAGCTAACCCAAGGGCACCTTGACCCGCACCATCTGAGTCAACCGTAAATCTTTGTGGCTCATGAGTGAACCCTCCTTCTAAGCCTGGACCGTAAGCTCTTACTCTT]
[-] EMBL CD064068 [AATCGATATTGTATACTCACCAGGTACTAATGGTAAATAGCTTACACTACAAGTACCATTTTTATTATCATCACATTGAATATCGGCTTTAGATGGTCCTTCAACGGAAAGTGACAATCCGCCTGCTCCAGCATCGCGTGTAATTAAAGTGAAATTTGATGGTTCTCCAGCACGACCACAAGATAATCCTGGTCCATAAGCTGTAACAATTCCAGATCCAACAGCTTCAACATAGAATCTGAAAGGACTACCTGGTATTGGTTGACCATTATAAGTTATTTCTAATTCATGGAGTCCAGGTTCATTTGGTTGAAATTGTGCTGTAACTGTTCCATCACCATTATCCAATAAAGTCGGATGTAGAATTCGACCACTTGGAGTACGAACC AACCTTCCACATGACTAAATGTTGGGCC ACAGGTAGTTTAAAGTCAACTGGGT ATATCC ]
[+] EMBL CD188760 [ TGTAACAATTCCAGATCCAACAGCTTCAACATAGAATCTGAAAGGACTACCTGGTATTGGTTGACCATTATAAGTTATTTCTAATTCATGGAGTCCAGGTTCATTTGGTTGAAATTGTGCTGTAACTGTTCCATCACCATTATCCAATAAAGTCGGATGTAGAATTCGACCACTTGGAGTACGAACCAAACCTTCCACATGACTAAATGTTGGGCCAACAGGTAGTTTAAAGTCAACTGGGTGATATCCTGTTGTGACC ]
[+] EMBL CD128951 [ TAAAGTCGGATGTAGAATTCGACCACTTGGAGTACGAACCAAACCTTCCACATGACTAAATGTTGGGCCAACAGGTAGTTTAAAGTCAACTGGGTGATATCCTGTTGTGACCGTTGAAGACTGGACAGACTGCACAGATTGTACAGTTACATGTTGTACTCTTTGATCAGTTACATCATTCATTAGTTCTTCTGGGCTGACGGCTTTTTGGTTAAACCTTTCATTTGGTATAAGTTCACCGCCAAATCTTATCTCAACCAAATAATCACCACGAATTGGTGGTGTATAGTAAATATTAACTCGACCGTTTGGTGCTTCATGAATTTCAACATCGGCTGTTGCTCCAGATGGTGTAACAATACGACAAGTTAACTGTCCAACACCAGCTTGTTGTGTATTCACACTGATAACACATTCTTGACCAACAGGTATTCGGCTATCATTTCCATTTTCTATACGACACATATTANATCGTCCAGATGGTGC ACTGG ]
[-] EMBL CD170266 [ TGGTTAAACCTTCCATTTGGTATAAGTTCACCGCCAAATCTTATCTCAACCAAATAATCACCACGAATTGGTGGTGTATAGTAAATATTAACTCGACCGTTTGGTGCTTCATGAATTTCAACATCGGCTGTTGCTCCAGATGGTGTAACAATACGACAAGTTAACTGTCCAACACCAGCTTGTTGTGTATTCACACTGATAACACATTCTTGACCAACAGGTATTCGGCTATCATTTCCATTTTCTATACGACACATATTAGATCG ]
[-] EMBL CD192116 [ CCAGATGGTGTAACAATACGACAAGTTAACTGTCCAACACCAGCTTGTTGTGTATTCACACTGATAACACATTCTTGACCAACAGGTATTCGGCTATCATTTCCATTTTCTATACGACACATATTAGATCGTCCAGATGGTGCAACTGGTACTAGGAATGGACTTTCAGGAATTTCTTGCCCACCATATTTCACTCGTACAGTATGACGTCCAACAATCATTGGTGTATAATGACATACATATGTTCCATCTCCAACACCCACTACTTCTA ]
[-] EMBL CD113900 [ GTCCAACAATCATTGGTGTATAATGACAAACATATGTTCCATCTCCAACATCCACTACTTCTAATTGTAATGGTTGACCATCAGGATCCATTACTGATAATTCTAGGTCTCCGAGACCTGCATCTCTTGTATCTACTTGGAAAGAAGTCGGTTGAGTAGCTGGAAGTCCTAATGGACGAGTTGGATGAACGCCTTCACCTGTTACACGCACACGTTGTGGTTCAAAAGCTGGTAAGACATGTTGTGTGAATGGTGATCGAGCTACATGATTTCCTGCTTGTTTAACTTCAATTTGACATGGACCGTCGGTATCTGGAACATATGTCACATCATAGA ]
[+] EMBL CD142480 [ CTACATGATTTCCTGCTTGTTTAACTTCAATTTGACATGGACCGTCGGTATCTGGAACATATGTCACATCATAGACACCTGGTTGATTTGGCCGTGGAACAACATGTGCCGGTGCTGTTCTTCCAACACGATCAACTGCTGCGACTTGGATAGGCGCATCTCCTGCCTGTGAAGCATTAACAGTAAAGTGAGCTGGTTGTTGCGCTCGTGCTCCTCTGGGCTCTAGACCTGGACCATAACAACGAACACGAGTTGCGTCAACCACATCTCGTATGGGAACTTGGAATGGACTACCTGGAATATTCATATCGTTAAATTTAACGAAGATATCATATGTTCCTGCCCGTGTTG ]
[+] EMBL CD168855 [ ACATGATTTCCTGCTTGTTTAACTTCAATTTGACATGGACCGTCGGTATCTGGAACATATGTCACATCATAGACACCTGGTTGATTTGGCCGTGGAACAACATGTGCCGGTGCTGTTCTCCCAACACGATCA ]
[-] EMBL CD118757 [ ACATATGTCACATCATAGACACCTGGTTGATTTGGCCGTGGAACAACATGTGCCGGTGCTGTTCTTCCAACACGATCAACTGTTGCGACTTGGATAGGCGCATCTCCTGCCTGTGAAGCATCAACAGTAAAGTGAGCTGGTTGTTGCGCTCGTGCTCCTCTGGGCTCTAGACCTGGACCATAACAACGAACACGAGTTGGGTCAACCACATCTCGTATGGGAACTTGGAATG ]
[-] EMBL CD118858 [ ACATATGTCACATCATAGACACCTGGTTGATTTGGCCGTGGAACAACATGTGCCGGTGCTGTTCTTCCAACACGATCAACTGTTGCGACTTGGATAGGCGCATCTCCTGCCTGTGAAGCATCAACAGTAAAGTGAGCTGGTTGTTGCGCTCGTGCTCCTCTGGGCTCTAGACCTGGACCATAACAACGAACACGAGTTGGGTCAACCACATCTCGTATGGGAACTTGGAATG ]
[-] EMBL CD118760 [ ACATATGTCACATCATAGACACCTGGTTGATTTGGCCGTGGAACAACATGTGCCGGTGCTGTTCTTCCAACACGATCAACTGTTGCGACTTGGATAGGCGCATCTCCTGCCTGTGAAGCATCAACAGTAAAGTGAGCTGGTTGTTGCGCTCGTGCTCCTCTGGGCTCTAGACCTGGACCATAACAACGAACACGAGTTGGGTCAACCACATCTCGTATGGGAACTTGGAATG ]
[+] EMBL CD093350 [ GATTTGGCCGTGGAACAACATGTGCCGGTGCTGTTCTACCAACACGATCAACTGTTGCGACTTGGATAGGCGCATCTCCTGCCTGTGAAGCATCAACAGTAAAGTGAGCTGGTTGTTGCGCTCGTGCTCCTCTGGGCTCTAGACCTGGACCATAACAACGAACACGAGTTGGGTCAACCACATCTCGTATGGGAACTTGGAATGGACTACCTGGAATATTCATATCGTTAAATTTAACGAAGATATCATATGTTCCTGCCCGTGTTGGTAAGTAGTCCACTGTACATGTTCCATCTTTATTATCTTGACATTGTATTTGAGCGTCAGCTGGCCCTTCTAAAGCTAACCCAAGGGCACCTTGACCCGCACCATCTGAGTCAACCGTAAATCTTTGTGGCTCATGAGTGAACCCTCCTTCTAAGCCTGGACCGTAAGCTCTTACTCTT]
[+] EMBL CD124899 [ GAACACGAGTTGGGTCAACCACATCTCGTATGGGAACTTGGAATGGACTACCTGGAATATTCATATCGTTAAATTTAACGAAGATATCATATGTTCCTGCCCGTGTTGGTAAGTAGTCCACTGTACATGTTCCATCTTTATTATCTTGACATTGTATTTGAGCGTCAGCTGGCCCTTCTAAAGCTAACCCAAGGGCACCTTGACCCGCACCATCTAAGTCAACCGTAAATCTTTGTGGCTCATGAGTGAACCCTCCTTCTAAGCCTGGACCGTAAGCTCTTACTCTT]
consensusID : consensus_10186#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 318 fasta sequence
[GAAGCATCAACAGTAAAGTGAGCTGGTTGTTGCGCTCGTGCTCCTCTGGGCTCTAGACCTGGACCATAACAACGAACACGAGTTGGGTCAACCACATCTCGTATGGGAACTTGGAATGGACTACCTGGAATATTCATATCGTTAAATTTAACGAAGATATCATATGTTCCTGCCCGTGTTGGTAAGTAGTCCACTGTACATGTTCCATCTTTATTATCTTGACATTGTATTTGAGCGTCACAGGCAGGAGATGCGCCTATCCAAGTCGCAACAGTTGATCGTGTTGGAAGAACAGCACCGGCACATGTTGTTCCACGG]
[+] EMBL CD187560 [GAAGCATCAACAGTAAAGTGAGCTGGTTGTTGCGCTCGTGCTCCTCTGGGCTCTAGACCTGGACCATAACAACGAACACGAGTTGGGTCAACCACATCTCGTATGGGAACTTGGAATGGACTACCTGGAATATTCATATCGTTAAATTTAACGAAGATATCATATGTTCCTGCCCGTGTTGGTAAGTAGTCCACTGTACATGTTCCATCTTTATTATCTTGACATTGTATTTGAGCGTCACAGGCAGGAGATGCGCCTATCCAAGTCGCAACAGTTGATCGTGTTGGAAGAACAGCACCGGCACATGTTGTTCCACGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10186#0 AATCGATATTGTATACTCACCAGGTACTAATGGTAAATAGCTTACACTACAAGTACCATT 60
consensus_10186#1 ------------------------------------------------------------
consensus_10186#0 TTTATTATCATCACATTGAATATCGGCTTTAGATGGTCCTTCAACGGAAAGTGACAATCC 120
consensus_10186#1 ------------------------------------------------------------
consensus_10186#0 GCCTGCTCCAGCATCGCGTGTAATTAAAGTGAAATTTGATGGTTCTCCAGCACGACCACA 180
consensus_10186#1 ------------------------------------------------------------
consensus_10186#0 AGATAATCCTGGTCCATAAGCTGTAACAATTCCAGATCCAACAGCTTCAACATAGAATCT 240
consensus_10186#1 ------------------------------------------------------------
consensus_10186#0 GAAAGGACTACCTGGTATTGGTTGACCATTATAAGTTATTTCTAATTCATGGAGTCCAGG 300
consensus_10186#1 ------------------------------------------------------------
consensus_10186#0 TTCATTTGGTTGAAATTGTGCTGTAACTGTTCCATCACCATTATCCAATAAAGTCGGATG 360
consensus_10186#1 ------------------------------------------------------------
consensus_10186#0 TAGAATTCGACCACTTGGAGTACGAACCAAACCTTCCACATGACTAAATGTTGGGCCAAC 420
consensus_10186#1 ------------------------------------------------------------
consensus_10186#0 AGGTAGTTTAAAGTCAACTGGGTGATATCCTGTTGTGACCGTTGAAGACTGGACAGACTG 480
consensus_10186#1 ------------------------------------------------------------
consensus_10186#0 CACAGATTGTACAGTTACATGTTGTACTCTTTGATCAGTTACATCATTCATTAGTTCTTC 540
consensus_10186#1 ------------------------------------------------------------
consensus_10186#0 TGGGCTGACGGCTTTTTGGTTAAACCTTTCATTTGGTATAAGTTCACCGCCAAATCTTAT 600
consensus_10186#1 ------------------------------------------------------------
consensus_10186#0 CTCAACCAAATAATCACCACGAATTGGTGGTGTATAGTAAATATTAACTCGACCGTTTGG 660
consensus_10186#1 ------------------------------------------------------------
consensus_10186#0 TGCTTCATGAATTTCAACATCGGCTGTTGCTCCAGATGGTGTAACAATACGACAAGTTAA 720
consensus_10186#1 ------------------------------------------------------------
consensus_10186#0 CTGTCCAACACCAGCTTGTTGTGTATTCACACTGATAACACATTCTTGACCAACAGGTAT 780
consensus_10186#1 ------------------------------------------------------------
consensus_10186#0 TCGGCTATCATTTCCATTTTCTATACGACACATATTAGATCGTCCAGATGGTGCACTGGT 840
consensus_10186#1 ------------------------------------------------------------
consensus_10186#0 ACTAGGAATGGACTTTCAGGAATTTCTTGCCCACCATATTTCACTCGTACAGTATGACGT 900
consensus_10186#1 ------------------------------------------------------------
consensus_10186#0 CCAACAATCATTGGTGTATAATGACATACATATGTTCCATCTCCAACACCCACTACTTCT 960
consensus_10186#1 ------------------------------------------------------------
consensus_10186#0 AATTGTAATGGTTGACCATCAGGATCCATTACTGATAATTCTAGGTCTCCGAGACCTGCA 1020
consensus_10186#1 ------------------------------------------------------------
consensus_10186#0 TCTCTTGTATCTACTTGGAAAGAAGTCGGTTGAGTAGCTGGAAGTCCTAATGGACGAGTT 1080
consensus_10186#1 ------------------------------------------------------------
consensus_10186#0 GGATGAACGCCTTCACCTGTTACACGCACACGTTGTGGTTCAAAAGCTGGTAAGACATGT 1140
consensus_10186#1 ------------------------------------------------------------
consensus_10186#0 TGTGTGAATGGTGATCGAGCTACATGATTTCCTGCTTGTTTAACTTCAATTTGACATGGA 1200
consensus_10186#1 ------------------------------------------------------------
consensus_10186#0 CCGTCGGTATCTGGAACATATGTCACATCATAGACACCTGGTTGATTTGGCCGTGGAACA 1260
consensus_10186#1 ------------------------------------------------------------
consensus_10186#0 ACATGTGCCGGTGCTGTTCTTCCAACACGATCAACTGTTGCGACTTGGATAGGCGCATCT 1320
consensus_10186#1 ------------------------------------------------------------
consensus_10186#0 CCTGCCTGTGAAGCATCAACAGTAAAGTGAGCTGGTTGTTGCGCTCGTGCTCCTCTGGGC 1380
consensus_10186#1 ---------GAAGCATCAACAGTAAAGTGAGCTGGTTGTTGCGCTCGTGCTCCTCTGGGC 51
***************************************************
consensus_10186#0 TCTAGACCTGGACCATAACAACGAACACGAGTTGGGTCAACCACATCTCGTATGGGAACT 1440
consensus_10186#1 TCTAGACCTGGACCATAACAACGAACACGAGTTGGGTCAACCACATCTCGTATGGGAACT 111
************************************************************
consensus_10186#0 TGGAATGGACTACCTGGAATATTCATATCGTTAAATTTAACGAAGATATCATATGTTCCT 1500
consensus_10186#1 TGGAATGGACTACCTGGAATATTCATATCGTTAAATTTAACGAAGATATCATATGTTCCT 171
************************************************************
consensus_10186#0 GCCCGTGTTGGTAAGTAGTCCACTGTACATGTTCCATCTTTATTATCTTGACATTGTATT 1560
consensus_10186#1 GCCCGTGTTGGTAAGTAGTCCACTGTACATGTTCCATCTTTATTATCTTGACATTGTATT 231
************************************************************
consensus_10186#0 TGAGCGTCAGCTGGCCCTTCTAAAGCTAACCCAAG--GGCACCTTGACCCGCACCATCTG 1618
consensus_10186#1 TGAGCGTCA-CAGGCAGGAGATGCGCCTATCCAAGTCGCAACAGTTGATCGTGTTGGAAG 290
********* * *** ** * ***** * ** * ** *
consensus_10186#0 AGTCAACCGTAAATCTTTGTGGCTCATGAGTGAACCCTCCTTCTAAGCCTGGACCGTAAG 1678
consensus_10186#1 AA-CAGCACCGGCACATGTTGTTCCACGG------------------------------- 318
* ** * * * ** ** *
consensus_10186#0 CTCTTACTCTT 1689
consensus_10186#1 -----------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||