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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1058 fasta sequence
[CGAGGGCAGTTGTTGCTATTTCGGGTGTCGTATTGGGACTAATATTCAGGCCTAAAAAGCCGAAAAAAACTCTTGTGGANTATGATACGAAAGTTCCTTTACGAGTAGTGGATAGAAGTTTCATCACTCATGATACAATCCGCCTAAAACTAGGACTTCCCACAGCTGACCATGTTCTTGGATTGCCTGTTGGTAATCATGTATATTTCAGTGCAAAACTTGATGGAAATATGGTCGTTCGGCCTTACACCCCGATCACACTAGACAGTCAGAAAGGATATGTTGACTTCGTCATAAAAGTGTATAAAGGAAACGTTAATCCCAAATTTCCTAAAGGTGGAGTTATGTCGCAATATTTGGCTAATCTCCCTGTCGATGGATTTATTGATGTTCGTGGTCCATCTGGAAGATTGGAATACAAAGGGTCTGGTTTATTCCA-TATAAAGCCGGATCTACGTAGTTCACCTAACCCTGTAAAAGTAAAACATGTCAATATGATTTGTGGTGGGTCTGGTATAACACCAATGTTCCAACTATTATCCTACATACTTCAGTCTAAAGATGATACAACGCAAATAGCAATGGTTTTTGCTAATGTGACTGAAAAAGATATAATTCTACGTGATGAACTAGAAAATTTCAAAGATAAATATCCAAATCATTTTCGTCTTTGGTATACAGTAAATGAAGCACCTGAACATTGGGCATACAGTACTGGTTATGTGAATGAACAAATATTACAAGAACATATTTATCCAGCAAAAGATGATACAATCACATTAATTTGTGGTCCGCCACCATTTATTGAATTTGCTTGTCTTCCATCACTTTCTAAATTAGATTATCCAAAAAATATGATTCATGTCTTTTGAATCTTGATTTACTTATTGTCCATCTATTTCATTGGTTTACATTGGTTCATCTTATCTATAACTTCTCATTAGTTTTCATAGTTACATAACCCTATTGCATTGGGTTTTAGTTTGCCATGGGTAAGATACTACTAT-TACTATTTAT-TTCCTTCA-T-CAATATATC-ACTGTTAAATGTTTTAAATAAAT]
[+] EMBL CD084035 [CGAGGGCAGTTGTTGCTATTTCGGGTGTCGTATTGGGACTAATATTCAGGCCTAAAAAGCCGAAAAAAACTCTTGTGGANTATGATACGAAAGTTCCTTTACGAGTAGTGGATAGAAGTTTCATCACTCATGATACAATCCGCCTAAAACTAGGACTTCCCACAGCTGACCATGTTCTTGGATTGCCTGTTGGTAATCATGTATATTTCAGTGCAAAACTTGATGGAAATATGGTCGTTCGGCCTTACACCCCGATCACACTAGACAGTCAGAAAGGATATGTTGACTTCGTCATAAAAGTGTATAAAGGAAACGTTAATCCCAAATTTCCTAAAGGTGGAGTTATGTCGCAATATTTGGCTAATCTCCCTGTCGATGGATTTATTGATGTTCGTGGTCCATCTGGAAGATTGGAATACAAAG ]
[+] EMBL CD081409 [ cgagggcGTGTCGTATTGGGACTAATATTCAGGCCTAATTAGCCGAAAAAAACTCTTCTGGATAATGATACGAAAGTTCCTTTACGAGTAGTGGATAGAAGTTTCATCACTCATGATACAATCCGCCTAAAACTAGGACTTCCCACAGCTGACCATGTTCTTGGATTGCCTGTTGGTAATCATGTATATTTCAGTGCAAAACTTGATGGAGATATGGTCGTTCGGCCTTACACCCCGATCACACTAGACAGTCAGAAAGGATATGTTGACTTCGTCATAAAAGTGTATAAAGGAAACGTTAATCCCAAATTTCCTAAAGGTGGAGTTATGTCGCAATATTTGGCTAATCTCCCTGTCGATGGATTTATTGATGTTCGTGGTCCATCTGGAAGATTGGAATACAAAGGGTCTGGTTTATTCCA TATAAAGCCGGATCTACGTAGTTCACCTAACCCTGTAAAAGTAAAACATGTCAATATGATTTGTGGTGGGTCTGGTATAACACCAATGTTCCAACTATTATCCTACATACTTCAGTCTAAAGATGATACAACGCANATAGCAATGGTTTTTGCTAATGTGACTG NAAAGATATAATTCTACGTGATGAACTAGAAAATTTCAAAGATAAATAT ]
[+] EMBL CD124930 [ CAGTCAGAAAGGATATGTTGACTTCGTCATAAAAGTGTATAAAGGAAACGTTAATCCCAAATTTCCTAAAGGTGGAGTTATGTCGCAATATTTGGCTAATCTCCCTGTCGATGGATTTATTGATGTTCGTGGTCCATCTGGAAGATTGGAATACAAAGGGTCTGGTTTATTCCA TATAAAGCCGGATCTACGTAGTTCACCTAACCCTGTAAAAGTAAAACATGTCAATATGATTTGTGGTGGGTCTGGTATAACACCAATGTTCCAACTATTATCCTACATACTTCAGTCTAAAGATGATACAACGCAAATAGCAATGGTTTTTGCTAATGTGACTGAAAAAGATATAATTCTACGTGATGAACTAGAAAATTTCAAAGATAAATATCCAAATCATTTTCGTCTTTGGTATACAGTAAATGAAGCACCTGAACATTGGGCATACAGTACTGGTTATGTGAATGAACAAATATTACAA ]
[-] EMBL CD064406 [ ATCCCAAATTTCCTAAAGGTGGAGTTATGTCGCAATATTTGGCTAATCTCCCTGTCGATGGATTTATTGATGTTCGTGGTCCATCTGGAAGATTGGAATACAAAGGGTCTGGTTTATTCCA TATAAAGCCGGATCTACGTAGTTCACCTAACCCTGTAAAAGTAAAACATGTCAATATGATTTGTGGTGGGTC ]
[+] EMBL BE505152 [ GCTAATCTCCCTGTCGATGGATTTNTTGATGTTCGTGGTCCATCTGGCAGATTGGCATACAAAGGGTCTGGTTTATTCCA TATAAGGCCGGATCTACGTAGTTCACCTAACCCTGTAAAAGTAAAACATGTCAATATGATTTGTGGTGGGTCTGGTATAACACCAATGTT CAACTATTATCCTACATACTTCAGTCT ]
[+] EMBL CD166739 [ ATACAAAGGGTCTGGTTTATTCCACTATAAAG CGGATCTACGTAGTTCACCTAACCCTGTAAAAGTAAAACATGTCAATATGA TTGTGGTGGGTCTGGTATAACACCAATGTTCCAACTATTATCCTACATACTTCAGTCTAAAGATGATACAACGCAAATAGCAATGGTTTTTGCTAATGTGACTGAAAAAGATATAATTCTACGTGATGAACTAGAAAATTTCAAAGATAAATATCCAAATCATTTTCGTCTTTGGTATACAGTAAATGAAGCACCTGAACATTGGGCATACAGTACTGGTTAT ]
[-] EMBL BG931160 [ TGGTGGGTTTGGTATAACACCAATGTTCCAACTATTATCCTACATACTTCAGTCTAAAGATGATACAACGCAAATAGCAATGGTTTTTGCTAATGTGACTGAAAAAGATATAATTCTACGTGATGAACTAGAAAATTTCAAAGATAAATATCCAAATCATTTTCGTCTTTGGTATACAGTAAATGAAGCACCTGAACATTGGGCATACAGTACTGGTTATGTGAATGAACAAATATTACAAGAACATATTTATCCAGCAAAAGATGATACAATCACATTAATTTGTGac ]
[-] EMBL CD178701 [ TCTGGTATAACACCAATGTTCCAACTATTATCCTACATACTTCAGTCTAAAGATGATACAACGCAAATAGCAATGGTTTTTGCTAATGTGACTGAAAAAGATATAATTCTACGTGATGAACTAGAAAATTTCAAAGATAAATATCCAAATCATTTTCGTCTTTGGTATACAGTAAATGAAGCACCTGAACATTGGGCATACAGTACTGGTTATGTGAATGAACAAATATTACAAGAACATATTTATCCAGCAAAAGATGATACAATCACATTAATTTGTGGTCCGCCACCATTTATTGA ]
[+] EMBL AI740385 [ ACGTGATGAACTAGAAAATTTCAAAGATAAATATCCAAATCATTTTCGTCTTTGGTATACAGTAAATGAAGCACCTGAACGTTGGGCATACAGTACTGGTTATGTGAATGAACAAATATTACAAGAACATATTTATCCAGCAAAAGATGATACAATCACATTAATTTGTGGTCCGCCACCATTTATTGAATTTGCTTGTCTTCCATCACTTTCTAAATTAGATTATCCAAAAAATATGATTTATGTCTTTTGAATCTTGATTTACTTATTGTCCATCTATTTCATTGGTTTACATTGGGTCATCTTATCTATAACTTCTCATTAGTTTTCATAGTTACATAACCCTATTGCATTGGGTTTTAGTTTGCCATGGGTAAGATACTACTATACACTATTTATCCCCCTTCA T CCATATATC ACGGTTAA ]
[+] EMBL CD190145 [ TAGAAAATTTCAAAGGTAAATATCCAAATCATTTTCGTCTTTGGTATACAGTAAATGAAGCACCTGAACATTGGGCATACAGTACTGGTTATGTGAATGAACAAATATTACAAGAACATATTTATCCAGCAAAAGATGATACAATCACATTAATTTGTGGTCCGCCACCATTTATTGAATTTGCTTGTCTTCCATCACTTTCTAAATTAGATTATCCAAAAAATATGATTCATGTCTTTTGAATCTTGATTTACTTATTGTCCATCTATTTCATTGGTTTACATTGGTTCATCTTATCTATAACTTCTCATTAGTTTTCATAGTTACATAACCCTATTGCATTGng ]
[-] EMBL CD075239 [ ACAGTAAATGAAGCACCTGAACATTGGGCATACAGTACTGGTTATGTGAATGACCAAATATTCCAAGAACATATTTATCCAGCAAAAGATGATCCAATCCCATTAATTTGTGGTCCGCCCCCATTTATTGAATTTGCTTGTCTTCCATCCCTTTTTAAATTAGATTATCCAAAAAATATGATTCATGTCTTTTGAATCTTGATTTACTTATTGTCCATCTATTTCATTGGTTTACATTGGTTCATCTTATCTATAACTTCTCATTAGTTTTCATAGTTACATACCCCTATTGCATTGGGTTTTAGTTTCCCATGGGTAAGATACTACTAT TACTATTTAT TTCCTTCATT CAATATATCAACTGTTAAATGTTTTAAATAAA ]
[+] EMBL SM779 [ TGTGAATGAACAAATATTACAAGAACATATTTATCCAGCAAAAGATGATACAATCACATTAATTNGTGGTCCGCCACCATTTATTGAATTTGGTTGTCTTCCATCACTTTCTAAATTAGATTATCCAAAAAATATGATTCATGTCTNNGGAATCTTGATTTACTTATNGNCCATCTATTTCATTGGTTTACATTGGCTCATCTTATCTATAACTTCTCATTAGTTTTCATAGTTACATAACCCTATTGCATTGGGTNTTAGNTTGCCATGGGTAAGATACTACTAT TACTATTTAT TTCCTTCA TNCAATATATCAACTGTTAAATGTTTTNAATAAAT]
consensusID : consensus_10190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 299 fasta sequence
[ATCTGGTATAACACCAATGTTCCAACTATTATCCTACATACTTCAGTCTAAAGATGATACAACGCAAATAGCAATGGTTTTTGCTAATGTGACTGAAAAAGATATAATTCTACGTGATGAACTAGAAAATTTCAAAGATAAATATCCAAATCATTTTCGTCTTTGGTATACAGTAAATGAAGCACCTGAACATTGGGCATACAGTACTGGTTATGTGAATGAACAAATATTACAAGAACATATTTATCCAGCAAAAGATGATACAATCACATTAATTTGTGATCCCCCATCTATCAGAA]
[+] EMBL BG931519 [ATCTGGTATAACACCAATGTTCCAACTATTATCCTACATACTTCAGTCTAAAGATGATACAACGCAAATAGCAATGGTTTTTGCTAATGTGACTGAAAAAGATATAATTCTACGTGATGAACTAGAAAATTTCAAAGATAAATATCCAAATCATTTTCGTCTTTGGTATACAGTAAATGAAGCACCTGAACATTGGGCATACAGTACTGGTTATGTGAATGAACAAATATTACAAGAACATATTTATCCAGCAAAAGATGATACAATCACATTAATTTGTGATCCCCCATCTATCAGAA]
[+] EMBL BG931510 [ATCTGGTATAACACCAATGTTCCAACTATTATCCTACATACTTCAGTCTAAAGATGATACAACGCAAATAGCAATGGTTTATGCTAATGTGACTGAAAAAGATATAATTCTACGTGATGAACTAGAAAATTTCAAAGATAAATATCCAAATCATTTTCGTCTTTGGTATACAGTAAATGAAGCACCTGAACATAGGGCATACAGTACTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10190#0 CGAGGGCAGTTGTTGCTATTTCGGGTGTCGTATTGGGACTAATATTCAGGCCTAAAAAGC 60
consensus_10190#1 ------------------------------------------------------------
consensus_10190#0 CGAAAAAAACTCTTGTGGANTATGATACGAAAGTTCCTTTACGAGTAGTGGATAGAAGTT 120
consensus_10190#1 ------------------------------------------------------------
consensus_10190#0 TCATCACTCATGATACAATCCGCCTAAAACTAGGACTTCCCACAGCTGACCATGTTCTTG 180
consensus_10190#1 ------------------------------------------------------------
consensus_10190#0 GATTGCCTGTTGGTAATCATGTATATTTCAGTGCAAAACTTGATGGAAATATGGTCGTTC 240
consensus_10190#1 ------------------------------------------------------------
consensus_10190#0 GGCCTTACACCCCGATCACACTAGACAGTCAGAAAGGATATGTTGACTTCGTCATAAAAG 300
consensus_10190#1 ------------------------------------------------------------
consensus_10190#0 TGTATAAAGGAAACGTTAATCCCAAATTTCCTAAAGGTGGAGTTATGTCGCAATATTTGG 360
consensus_10190#1 ------------------------------------------------------------
consensus_10190#0 CTAATCTCCCTGTCGATGGATTTATTGATGTTCGTGGTCCATCTGGAAGATTGGAATACA 420
consensus_10190#1 ------------------------------------------------------------
consensus_10190#0 AAGGGTCTGGTTTATTCCATATAAAGCCGGATCTACGTAGTTCACCTAACCCTGTAAAAG 480
consensus_10190#1 ------------------------------------------------------------
consensus_10190#0 TAAAACATGTCAATATGATTTGTGGTGGGTCTGGTATAACACCAATGTTCCAACTATTAT 540
consensus_10190#1 ----------------------------ATCTGGTATAACACCAATGTTCCAACTATTAT 32
*******************************
consensus_10190#0 CCTACATACTTCAGTCTAAAGATGATACAACGCAAATAGCAATGGTTTTTGCTAATGTGA 600
consensus_10190#1 CCTACATACTTCAGTCTAAAGATGATACAACGCAAATAGCAATGGTTTTTGCTAATGTGA 92
************************************************************
consensus_10190#0 CTGAAAAAGATATAATTCTACGTGATGAACTAGAAAATTTCAAAGATAAATATCCAAATC 660
consensus_10190#1 CTGAAAAAGATATAATTCTACGTGATGAACTAGAAAATTTCAAAGATAAATATCCAAATC 152
************************************************************
consensus_10190#0 ATTTTCGTCTTTGGTATACAGTAAATGAAGCACCTGAACATTGGGCATACAGTACTGGTT 720
consensus_10190#1 ATTTTCGTCTTTGGTATACAGTAAATGAAGCACCTGAACATTGGGCATACAGTACTGGTT 212
************************************************************
consensus_10190#0 ATGTGAATGAACAAATATTACAAGAACATATTTATCCAGCAAAAGATGATACAATCACAT 780
consensus_10190#1 ATGTGAATGAACAAATATTACAAGAACATATTTATCCAGCAAAAGATGATACAATCACAT 272
************************************************************
consensus_10190#0 TAATTTGTGGTCCGCCACCATTTATTGAATTTGCTTGTCTTCCATCACTTTCTAAATTAG 840
consensus_10190#1 TAATTTGTGATCCCCCATCTATCA--GAA------------------------------- 299
********* *** *** * * * ***
consensus_10190#0 ATTATCCAAAAAATATGATTCATGTCTTTTGAATCTTGATTTACTTATTGTCCATCTATT 900
consensus_10190#1 ------------------------------------------------------------
consensus_10190#0 TCATTGGTTTACATTGGTTCATCTTATCTATAACTTCTCATTAGTTTTCATAGTTACATA 960
consensus_10190#1 ------------------------------------------------------------
consensus_10190#0 ACCCTATTGCATTGGGTTTTAGTTTGCCATGGGTAAGATACTACTATTACTATTTATTTC 1020
consensus_10190#1 ------------------------------------------------------------
consensus_10190#0 CTTCATCAATATATCACTGTTAAATGTTTTAAATAAAT 1058
consensus_10190#1 --------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||