These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10191#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 971 fasta sequence [ATCTTGAGGAACAACACCTGAATTTTGACGATTAGACAATTGTTTACTTGCACGTGTACGAAGTTCAGGTTGATTTGAATGCACTTTATGACTATTATTTATACATGTACTGTTATTTGCAACTGTAGTAGTGATATTCTTAGTTGAAACATTTTCACCAACTAA-GGATATTTGGT-GTGCTG-GAGATCGATTGTTGAATCCAGATAGTAAATTTGATGTTGCTGATTGACGAGTAAAGTTAGAATTAAAAACTTCACTTGTTGTTGTCGTCACCGTCGTCACTGTGGTTGTACTAGTCGGCACTGATGTTGTCGTAGTTGTGGTGGTGGTAGTACTAGTAGTTACAGCAAAAGCCATCGCAGCTCCACTAGACCGATTAACAGGACTCGATATACTTGCGTTTACCGATGACTTGGATTGGTTAACAACTGGACCGGTTTGATGTGATGATCGATTGGGGTAAAGCTGATTCTAATGGTGGTTTACGAAGATCTAAATGTGGTATAGCCTGACTCATTGGACGGGTCGATGGAAATTTCGGTGCGACAATGTGCTGGAGACGAGAACTAGCAGGGTTACCCATGCCAACTATACTAGATGAACCATTCACTTCATCAGTTTGATGTTGTACTCCTGATGCATTATGTAATCCCCCATTCAATCCACTATTACTAATACGAACCTGCTGATGAAGTGGAATGGGTGGTGGACCAGGATTGGCGAGTTTTGCACGAAATGGCGAAATAAGTAAATTGCCCAAATGATCATTTGAAAATATCGATGATGATGATGATGATGAGGAGGAACAAGAAGTAACAACAGTCGGATGAAAAGAATTGGGAGGATTCGGCACAGATGCTCTATGATGTTGTAGGGGAAAATGATGCGAAAGTTGGCCACTATCACCAACTGCACCAATAACTGATAAGGGTGTAGTGACCGAATTATTAACTGAGGATGACGTGGACACA] [+] EMBL CD069604 [ATCTTGAGGAACAACACCTGAATTTTGACGATTAGACAATTGTTTACTTGCACGTGTACGAAGTTCAGGTTGATTTGAATGCACTTTATGACTATTATTTATACATGTACTGTTATTTGCAACTGTAGTAGTGATATTCTTAGTTGAAACATTTTCACCAACTAA GGATATTTGGT GTGCTG GAGATCGATTGTTGAATCCAGATAGTAAATTTGATGTTGCTGATTGACGAGTAAAGTTAGAATTAAAAACTTCACTTGTTGTTGTCGTCACCGTCGTCACTGTGGTTGTACTAGTCGGCACTGATGTTGTCGTAGTTGTGGTGGTGGTAGTACTAGTAGTTACAGCAAAAGCCATCGCAGCTCCACTAGACCGATTAACAGGACTCGATATACTTGCGTTTACCGATGACTTGGATTGGTTAACAACTGGACCGGTTTGATGTGATGATCGATTGGGGTAAAGCTGATTCTAATGGTGGTTTACGAAGATCTAAATGTGGTATAGCCTGACTCATTGGACGGGTCGATGGAAATTTCGGTGCGACAATGTGCTGGAGACGAG ] [-] EMBL CD123819 [ GTTTACTTGCACGTGTACGAAGTTCAGGTTGATTTGAATGCACTTTATGACTATTATTTATACATGTACTGTTATTTGCAACTGTTGTAGTGATATTCTTAGTTGAAACATTTTCACCAACTAA GGATATTTGGT GTGCTG GAGATCGATTGTTGAATCCAGATAGTAAATTTGATGTTGCTGATTGACGAGTAAAGTTAGAATTAAAAACTTCACTTGTTGTTGTCGTTACCGTCGTCcgg ] [+] EMBL CD069588 [ CAACTAANGGATATTTGGTAGTGCTGCGCGATCGATTGTTGAATCCAGATAGTAAATTTGATGTTGCTGGTTGACGAGTAAAGTTAGAATTAAAAACTTCACTTGTTGTTGTCGTCACCGTCGTCACTGTGGTTGTACTAGTCGGCACTGATGTTGTCGTAGTTGTGGTGGTGGTAGTACTAGTAGTTACAGCAAAAGCCATCGCAGCTCCACTAGACCGATTAACAGGACTCGATATACTTGCGTTTACCGATGACTTGGATTGGTTACCAACTGGACCGG TTGATGTGATGATCGATTGGGGTAAAGCTGATTCTAATGGTGGTTTACGAAGATCTAAATGTGGTATAGCCTGACTCATTGGACGGGT ] [-] EMBL CD181573 [ GGTTTACGAAGATCTAAATGTGGTATAGCCTGACTCATTGGACGGGTCGATGGAAATTTCGGTGCGACAATGTGCTGGAGACGAGAACTAGCAGGGTTACCCATGCCAACTATACTAGATGAACCATTCACTTCATCAGTTTGATGTTGTACTCCTGATGCATTATGTAATCCCCCATTCAATCCACTATTACTAATACGAACCTGCTGATGAAGTGGAATGGGTGGTGGACCAGGATTGGCGAGTTTTGCACGAAATGGCGAAATAAGTAAATTGCCCAAATGATCATTTGAA ] [-] EMBL CD130249 [ CCTGCTGATGAAGTGGAATGGGTGGTGGACCAGGATTGGCGAGTTTTGCACGAAATGGCGAAATAAGTAAATTGCCCAAATGATCATTTGAAAATATCGATGATGATGATGATGATGAGGAGGAACAAGAAGTAACAACAGTCGGATGAAAAGAATTGGGAGGATTCGGCACAGATGCTCTATGATGTTGTAGGGGAAAATGATGCGAAAGTTGGCCACTATCACCAACTGCACCAATAACTGATAAGGGTGTAGTGACCGAATTATTAACTGAGGATGACGTGGACACA] consensusID : consensus_10191#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 813 fasta sequence [CCACCATTATGTGAAATGCATCCAATGCGTGCACTTTTCTTAATTATGCGTAACTCACCACCTCGATTAAAACAATCACCGAACGGATCTAGACATTGAACACCAAGATTTCATGATTTTGTCAGTAAATGTTTAACTAAGGATTTCCATAAACGTCCAAATACATCAGAATTATTTCGACATGAATTCATTACAAATTTACCAAATGAACGACAAATTAGAATTCAACTTAAAGATCATATAGATAGACATAGACGAAATAGGCATACTGAAGAACATGAAAAAATTTATGAATACGAAGGAAGTGATGAAGAGGAG--GAAGAAGAAACCAGTGCAGCTGTTAAAGGGGCTGCTGCCGCTGCTTTAGCTATGTCAGCTGCTGTTAGTGGCAATGGTCAATCACATCGTCTACCTAGTCAAATTAGTCATCATCCACCTCAATTTCGTCAACCAATAGATAAACCTCACCATAATCAAGCGCTTCGAACTAGTGGAGTTCCTGATCAAAACGAAGTAGCATCGTTTGTTTCACAACCATCTGTATCTGGATTAAACTATAAACACCATGGACATATGATACAAGGTGGGAATATTGCAAATGATAATGTACCAGCGAATGCTCGATTTATCTCACGAAATCCTATGTCAGTGCTTAATAAGTTACCTGCTGTTACCCCACAATCAATGATGCCGCATAATAGTCGGTTGCCAAGGTTAGATGAAGGTGAATCAGCAACTGTCAATACTAAAGGACCAGGTGAAAATACACTTCGTCAAATTTTGCTCGTTTACGCAGGTGTCGTANTTAGTAAT] [+] EMBL CD178823 [CCACCATTATGTGAAATGCATCCAATGCGTGCACTTTTCTTAATTATGCGTAACTCACCACCTCGATTAAAACAATCACCGAACGGATCTAGACATTGAACACCAAGATTTCATGATTTTGTCAGTAAATGTTTAACTAAGGATTTCCATAAACGTCCAAATACATCAGAATTATTTCGACATGAATTCATTACAAATTTACCAAATGAACGACAAATTAGAATTCAACTTAAAGATCATATAGATAGACATAGACGAAATAGGCATACTGAAGAACATGAAAAAATTTATGAATACGAAGGAAGTGATGAAGAGGAG GAAGAAGAAACCAGTGCAGCTGTTAAAGGGGCTGCTGCCGCTGCTTTAGCTATGTCAGCTGCTGTTAGTGGCAATGGTCAATCACATCGTCTACCTAG ] [+] EMBL CD128172 [ CAGAATTATTTCGACATGAATTCATTACAAATTTACCAAATGAACGACAAATTAGAATTCAACTTAAAGATCATATAGATAGACATAGACGAAATAGGCAAACTGAAGAACATGAAAAAATTTATGAATACGAAGGAAGTGATGAAGAGGAG GAAGAAGAAACCAGTGCAGCTGTTAAAGGGGCTGCTGCCGCTGCTTTAGCTATGTCAGCTGCTGTTAGTGGCAATGGTCAATCACATCGTCTACCTAGTCAAATTAGTCATCATCCACCTCAATTTCGTCAACCAATAGATAAACCTCACCATAATCAAGCGCTTCGAACTAGTGGAGTTCCTGATCAAAACGAAGTAGCATCGTTTGTTTCACAACCATCTGTATCTGGATTAAACTATAAACACCATGGACATATGATACAAGGTGGGAATATTGCAAATGATAATGTACCAGCGAATGCTCGATTTATCTCACGAAATCCTATGTCAGTGC ] [+] EMBL CD127241 [ AGAACATGATAATAATTATGAATACGAAGGAAGTGATGCAGAGGAG GAAGAAGAAACCAGTGCAGCTGTTAAAGGGGCTGCTGCCGCTGCTTTAGCTATGTCAGCTGCTGTTAGTGGCAATGGTCAATCACATCGTCTACCTAGTCAAATTAGTCATCATCCACCTCAATTTCGTCAACCAATAGATAAACCTCACCATAATCAAGCGCTTCGAACTAGTGGAGTTCCTGATCAAAACGAAGTAGCATCGTTTGTTTCACAACCATCTGTATCTGGATTAAACTATAAACACCATGGACATATGATACAAGGTGGGAATATTGCAAATGATAATGTACCAGCGAATGCTCGATTTATCTCACGAAATCCTATGTCAGTGC ] [+] EMBL CD127932 [ cgnAAGTG CAAATAGTAGGTGAAGAAGAAACC TTGCAGCTGTTAAA GGGCTGCTGCCGCTGCTTTAGCTATGTCAGCTGCTGTTAGTGGCAATGGTCAATCACATCGTCTACCTAGTCAAATTAGTCATCATCCACCTCAATTTCGTCAACCAATAGATAAACCTCACCATAATCAAGCGCTTCGAACTAGTGGAGTTCCTGATCAAAACGAAGTAGCATCGTTTGTTTCACAACCATCTGTGTCTGGATTAAACTATAAACACCATGGACATATGATACAAGGTGGGAATATTGCAAATGATAATGTACCAGCGAATGCTCGATTTATCTCACGAAATCCTATGTCAGTGC ] [-] EMBL CD127845 [ AGGAG GAAGAAGAAACCAGTGCAGCTGTTAAAGGGGCTGCTGCCGCTGCTTTAGCTATGTCAGCTGCTGTTAGTGGCAATGGTCAATCACATCGTCTACCTAGTCAAATTAGTCATCATCCACCTCAATTTCGTCAACCAATAGATAAACCTCACCATAATCAAGCGCTTCGAACTAGTGGAGTTCCTGATCAAAACGAAGTAGCATCGTTTGTTTCACAACCATCTGTATCTGGATTAAACTATAAACACCATGGACATATGATACAAGGTGGGAATATTGCAAATGATAATGTACCAGCGAATGCTCGATTTATCTCACGAAATCCTATGTCAGTGCTTAATAAGTTACCT ] [+] EMBL CD132952 [ CCGCTGCTTTAGCTATGTCAGCTGCTGTTAGTGGCAATGGTCAATCACATCGTCTACCTAGTCAAATTAGTCATCATCCACCTCAATTTCGTCAACCAATAGATAAACCTCACCATAATCAAGCGCTTCGAACTAGTGGAGTTCCTGATCAAAACGAAGTAGCATCGTTTGTTTCACAATCATCTGTATCTGGATTAAACTATAAACACCATGGACATATGATACAAGGTGGGAATATTGCAAATGATAATGTACCAGCGAATGCTCGATTTATCTCACGAAATCCTATGTCAGTGCTTAATAAGTTACCTGCTGTTACCCCACAATCAATGATGCCGCATAATAGTCGGTTGCCAAGGTTAGATGAAGGTGAATCAGCAACTGTCAA ] [-] EMBL CD166687 [ ATCAAGCGCTTCGAACTAGTGGAGTTCCTGATCAAAACGAAGTGGCATCGTTTGTTTCACAACCATCTGTATCTGGATTAAACTATAAACACCATGGACATATGATACAAGGTGGGAATATTGCAAATGATAATGTACCAGCGAATGCTCGATTTATCTCACGAAATCCCATGTCAGTGCTTAATAAGTTACCTCCTGTTACCCCACAATCAATGATGCCGCATAATAGTCGGTTGCCAAGGTTAGATGAAGGTGAATCAGCAACTGTCAATACTAAAGGACCAGGTGAAAATACACTTCGTCAAATTTTGCTCGTTTACGCAGGTGTCGTANTTAGTAAT] consensusID : consensus_10191#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 551 fasta sequence [CGATGACTTGGATTGGTTAACAACTGGACCGGTTGATGTGATGATCGATTGGGGTAAAGCTGATTCTAATGGTGGTTTACGAAGATCTAAATGTGGTATAGCCTGACTCATTGGACGGGTCGATGGAAATTTCGGTGCGACAATGTGCTGGAGACGAGAACTAGCAGGGTTACCCATGCCAACTATACTAGATGAACCATTCACTTCATCAGTTTGATGTTGTACTCCTGATGCATTTATGTAATCCCCCATTCAATCCACTATTACTAATACGAACCTGCTGATGAAGTGGAATGGGTGGTGGACCAGGATGGCGAGTTTTGCACGAAATGGCGAAATAAGTAAATTGCCCAAATGATCATTTGAAAATATCGATGATGATGATGAGGAGG-AACAAGAAGTAACAACAGTCGGATGAAAAGAATTGGGAGGATTCGGCTGTAAACGAGCAAAATTTTGACGAAGTGTATTTTCACCTGGTTCTTTAGTATTGACAGTTGCTGATTCACTATCTACCTTGGCAACCGACTATTATGCGGCATCTTACTTTA] [-] EMBL CD069567 [CGATGACTTGGATTGGTTAACAACTGGACCGGTTGATGTGATGATCGATTGGGGTAAAGCTGATTCTAATGGTGGTTTACGAAGATCTAAATGTGGTATAGCCTGACTCATTGGACGGGTCGATGGAAATTTCGGTGCGACAATGTGCTGGAGACGAGAACTAGCAGGGTTACCCATGCCAACTATACTAGATGAACCATTCACTTCATCAGTTTGATGTTGTACTCCTGATGCATTTATGTAATCCCCCATTCAATCCACTATTACTAATACGAACCTGCTGATGAAGTGGAATGGGTGGTGGACCAGGATGGCGAGTTTTGCACGAAATGGCGAAATAAGTAAATTGCCCAAATGATCATTTGAAAATATCGATGATGATGATGAGGAGG AACAAGAAGTAACAACAGTCGGATGAAAAGAATTGGGAGGATTCGGCTGTAAACGAGCAAAATTTTGACGAAGTGTATTTTCACCTGGTTCTTTAGTATTGACAGTTGCTGATTCACTATCTACCTTGGCAACCGACTATTATGCGGCATCTTACTTTA] [+] EMBL CD191206 [ GTTTTGCACGAAATGGCGAAATAAGTAAATTGCCCAAATGATCATTTGAAAATATCGATGATGATGATGAGGAGGAAACAGAAAGT ACAACAGTCGGATGAAAAGAATTGGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10191#0 ATCTTGAGGAACAACACCTGAATTTTGACGATTAGACAATTGTTTACTTGCACGTGTACG 60 consensus_10191#2 ------------------------------------------------------------ consensus_10191#1 ------------------------------------------------------------ consensus_10191#0 AAGTTCAGGTTGATTTGAATGCACTTTATGACTATTATTTATACATGTACTGTTATTTGC 120 consensus_10191#2 ------------------------------------------------------------ consensus_10191#1 ------------------------------------------------------------ consensus_10191#0 AACTGTAGTAGTGATATTCTTAGTTGAAACATTTTCACCAACTAAGGATATTTGGTGTGC 180 consensus_10191#2 ------------------------------------------------------------ consensus_10191#1 ----------------------------------------------------------CC 2 consensus_10191#0 TGGAGATCGATTGTTGAATCCAGATAGTAAATTTGATGTTGCTGATTGACGAGTAAAGTT 240 consensus_10191#2 ------------------------------------------------------------ consensus_10191#1 ACCATTATGTGAAATGCATCCAATGCGTGCACTTTTCTTAATTATGCGTAACTCACCACC 62 consensus_10191#0 AGAATTAAAAACTTCACTTGTTGT-TGTCGTCACCGTCGTCACTGTGGTTGTACTAGTCG 299 consensus_10191#2 ------------------------------------------------------------ consensus_10191#1 TCGATTAAAACAATCACCGAACGGATCTAGACATTGAACACCAAGATTTCATGATTTTGT 122 consensus_10191#0 GCACTGATGTTGTCGTAGTTGTGGTGGTGGTAGTACTAGTAGTTACAGCAAAAGCCATCG 359 consensus_10191#2 ------------------------------------------------------------ consensus_10191#1 CAGTAAATGTTTAACTAAGGATTTCCATAAACGTCCAAATACATCAGAATTATTTCGACA 182 consensus_10191#0 CAGCTCCACTAGACCGATTAACAGGACTCGATATACTTGCGTTTACCG-ATGACTTGGAT 418 consensus_10191#2 ----------------------------------------------CG-ATGACTTGGAT 13 consensus_10191#1 TGAATTCATTACAAATTTACCAAATGAACGACAAATTAGAATTCAACTTAAAGATCATAT 242 * * * ** consensus_10191#0 TGGTTAACAACTGGACCGGTTTGATGTGATGATCGATTGGGGTAAAGCT--GATTCTAAT 476 consensus_10191#2 TGGTTAACAACTGGACCGGTT-GATGTGATGATCGATTGGGGTAAAGCT--GATTCTAAT 70 consensus_10191#1 AGATAGACA--TAGACGAAATAGGCATACTGAAGAACATGAAAAAATTTATGAATACGAA 300 * * *** * *** * * * *** * * *** * ** * * consensus_10191#0 GGTGGTTTACGAAGATCTAAATGTGGTA--TAGCCTGACTCATTGGACGGGTCGATGGAA 534 consensus_10191#2 GGTGGTTTACGAAGATCTAAATGTGGTA--TAGCCTGACTCATTGGACGGGTCGATGGAA 128 consensus_10191#1 GGAAGTG-ATGAAGAGGAGGAAGAAGAAACCAGTGCAGCT-GTTAAAGGGGCTGCTG--- 355 ** ** * ***** * * * * ** ** ** * *** * ** consensus_10191#0 ATTTCGGTGCGACAA-TGTGCTGGAGACGAGAACTAGCAG-GGTTACCCATGCCAACTAT 592 consensus_10191#2 ATTTCGGTGCGACAA-TGTGCTGGAGACGAGAACTAGCAG-GGTTACCCATGCCAACTAT 186 consensus_10191#1 ---CCGCTGCTTTAGCTATGTCAGCTGCTGTTAGTGGCAATGGTCAATCACATCGTCTAC 412 ** *** * * ** * * * * *** *** * ** * *** consensus_10191#0 ACTAGATGAACCATTCACTTCATCAGTTTGATGTTGTACTCCTGATGCATT-ATGTAATC 651 consensus_10191#2 ACTAGATGAACCATTCACTTCATCAGTTTGATGTTGTACTCCTGATGCATTTATGTAATC 246 consensus_10191#1 -CTAGTCAAATTAGTCA--TCATCCACCTCAATTTCGTCAACCAATAGATAAACCTCA-- 467 **** ** * *** ***** * * ** * * ** ** * * * consensus_10191#0 CCCCATTCAATCCACTATTACTAATACGAACCTGCTGATGAAGTGGAATGGGTGGTGGAC 711 consensus_10191#2 CCCCATTCAATCCACTATTACTAATACGAACCTGCTGATGAAGTGGAATGGGTGGTGGAC 306 consensus_10191#1 CCATAATCAAGCGCTTCGAACTAGT--GGAGTTCCTGATCAAAACGAAGTAGCATCGTTT 525 ** * **** * * **** * * * * ***** ** *** * * consensus_10191#0 CAGGATTGGCGAGTTTTGCACGAAATGGCGAAATAAGTAAATTGCCCAAATGATC--ATT 769 consensus_10191#2 CAGGAT-GGCGAGTTTTGCACGAAATGGCGAAATAAGTAAATTGCCCAAATGATC--ATT 363 consensus_10191#1 GTTTCACAACCATCTGTATCTGGATTAA-ACTATAAACACCATGGACATATGATACAAGG 584 * * * * * * * **** * ** ** ***** * consensus_10191#0 TGAAAATATCGATGATGATGATGATGATGAGGAGGAACAAGAAGTAACA-ACAGTCGGAT 828 consensus_10191#2 TGAAAATATCGATGATGATG------ATGAGGAGGAACAAGAAGTAACA-ACAGTCGGAT 416 consensus_10191#1 TGGGAATATTGCAAATGATAATGTACCAGCGAATGCTCGATTTATCTCACGAAATCCTAT 644 ** ***** * ***** * * * * * * * ** * ** ** consensus_10191#0 GAAAAGAATTGGGAGGAT-TCGGC-ACAG----ATGCTCTATGATGTTGTAGGGGAAAAT 882 consensus_10191#2 GAAAAGAATTGGGAGGAT-TCGGCTGTAA----ACGAGC-AAAATTTTGACGAAGTGTAT 470 consensus_10191#1 GTCAGTGCTTAATAAGTTACCTGCTGTTACCCCACAATCAATGATGCCGCATAATAGTCG 704 * * ** * * * * ** * * * ** * consensus_10191#0 GATGCGAAAGTTGGCCACTATCACCAACTGCACCAATAACTGATAAGG-GTGTAGTGACC 941 consensus_10191#2 TTTCACCTGGTTCTTTAGTATTGACAGTTGC-TGATTCACTATCTA---CCTTGGCAACC 526 consensus_10191#1 GTTGCCAAGGTTAGATGAAGGTGA-ATCAGCAACTGTCAATACTAAAGGACCAGGTGAAA 763 * *** * ** * * * * * * consensus_10191#0 GAATTATTAACTGAGGATGACGTGGACACA-------------------- 971 consensus_10191#2 GACTATTATGCGGCATCTTACTTTA------------------------- 551 consensus_10191#1 ATACACTTCGTCAAATTTTGCTCGTTTACGCAGGTGTCGTANTTAGTAAT 813 * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||