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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10192#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 782 fasta sequence
[TTGAGAAATACTTCTCGGACCGTATTGTTAGTTCTGACAGTTAAACTTCTAAGGCTGGGAAGTGTTTATTAGTTGACTTGAAAGTTGGTATCTAACAATAATTGTACGTCCTTGTTATGCCTTTCTTTCTAGGTGTATTCTTCAGAAGGGCGGTTTGTTTTTACTGCTCATAGACCTGGCGAATACAAAATATGCATTTCATCTGATTCCGGTGCTTGGTTTGGTGGATCACAATTGGTAGGATATCCGCTACGTTCATAATTTTCTAGAGAGTACACCTCGACATTGCAGTTGGTGACCATGCTTTGAATTATCAAGAAATAGCTACAAAGGATAGATTAAACGATATTCAGCTTCGGGTTCGTCAGCTACTTGATCAGGTGCAAAGCATAGCGAAAGACCAAAATTATCAGCGTGTGAGAGAAGAAAGTTTCCGGTCACTAAGCGAAAGCACGAACCGACGCGTGACTTGGTGGAGTGTAGCTCAATTGGTCTTGCTTATCTGTATTGGATTCTGGCAAATGCGCCACTTGCGCGCTTTCTTCCAAGCCAAAAAACTGGTCTAAGTAACCATGTGTATATTCAGGCCTACCCACATCTATTGTGATAATCTTCTGTAAATGTAACATCTATGAGACGTGTCTGTGGAAACATCTCTAAATTTCACTTTTCATCTGTGTATTTGCATTGGTGTCAGTTCGTTTATTAACTATCCACTAATGAAGATCGTATGTACTTAGTATTTCCTGAAAGCTCTGTTCCTTTAATAACTTTCACGATTC]
[+] EMBL CD079857 [TTGAGAAATACTTCTCGGACCGTATTGTTAGTTCTGACAGTTAAACTTCTAAGGCTGGGAAGTGTTTATTAGTTGACTTGAAAGTTGGTATCTAACAATAATTGTACGTCCTTGTTATGCCTTTCTTTCTAGGTGTATTCTTCAGAAGGGCGGTTTGTTTTTACTGCTCATAGACCTGGCGAATACAAAATATGCATTTCATCTGATTCCGGTGCTTGGTTTGGTGGATCACAATTGGTAGGATATCCGCTACGTTCATAATTTTCTAGAGAGTACACCTCGACATTGCAGTTGGTGACCATGCTTTGAATTATCAAGAAATAGCTACAAAGGATAGATTAAACGATATTCAGCTTCGGGTTCGTCAGCTACTTGATCAGGTGCAAAGCATAGCGAAAGACCAAAATTATCAGCGTGTGAGAGAAGAAAGTTTCCGGTCACTAAGCGAAAGCACGAACCGACGCGTGACTTGGTGGAGTGTAGCTCAATTGGTCTTGCTTATCTGTATTGGATTCTGGCAAATGCGCCACTTGCGCGCTTTCTTCCAAGCCAAAAAACTGGTCTAAGTAACCATGTGTATATTCAGGCCTACCCACATCTATTGTGATAATCTTCTGTAAATGTAACATCTATGAGACGTGTCTGTGGAAACATCTCTAAATTTCACTTTTCATCTGTGTATTTGCATTGGTGTCAGTTCGTTTATTAACTATCCACTAATGAAGATCGTATGTACTTAGTATTTCCTGAAAGCTCTGTTCCTTTAATAACTTTCACGATTC]
[+] EMBL CD193637 [ ACTCGTAGGAATGTAGCTCAATTGGCCTTGCTTATCTGTATTGGATTCTGGCAAATGCGCCACTTGCGCGCTTTCTTCCAAGCCAAAAAACTGGTCTAAGTAACCATGTGTATATTCAGGCCTACCCACATCTATTGTGATAATCTTCTGTAAATGTAACATCTATGAGACGTGTCTGTGGAAACATCTCTAAATTTCACTTTTCATCTGTGTAT ]
[+] EMBL CD193638 [ GGAGGAGAGTAGCTCAATTGGTCTTGCTTATCTGTATTGGATTCTGGCAAATGCGCCACTTGCGCGCTTTCTTCCAAGCCAAAAAACTGGTCTAAGTAACCATGTGTATATTCAGGCCTACCCACATCTATTGTGATAATCTTCTGTAAATGTAACATCTATGAGACGTGTCTGTGGAAACATCTCTAAATTTCACTTTTCATCTGTGTAT ]
[+] EMBL CD193636 [ GGTGGAGTGTAGCTCAATTGGTCTTGCTTATCTGTATTGGATTCTGGCAAATGCGCCACTTGCGCGCTTTCTTCCAAGCCAAAAAACTGGTCTAAGTAACCATGTGTATATTCAGGCCTACCCACATCTATTGTGATAATCTTCTGTAAATGTAACATCTATGAGACGTGTCTGTGGAAACATCTCTAAATTTCACTTTTCATCTGTGTAT ]
[-] EMBL CD156811 [ GTGGAGTGTAGCTCAATTGGTCTTGCTTATCTGTATTGGATTCTGGCAAATGCGCCACTTGCGCGCTTTCTTCCAAGCCAAAAAACTGGTCTAAGTAACCATGTGTATATTCAGGCCTACCCACATCTATTGTGATAATCTTCTGTAAATGTAACATCTATGAGACGTGTCTGTGGAAACATCTCTAAATTTCACTTTTCATCTGTGTATT ]
[-] EMBL CD193552 [ GTGGAGTGTAGCTCAATTGGTCTTGCTTATCTGTATTGGATTCTGGCAAATGCGCCACTTGCGCGCTTTCTTCCAAGCCAAAAAACTGGTCTAAGTAACCATGTGTATATTCAGGCCTACCCACATCTATTGTGATAATCTTCTGTAAATGTAACATCTATGAGACGTGTCTGTGGAAACATCTCTAAATTTCACTTTTCATCTGTGTATT ]
[-] EMBL CD193565 [ GTGGAGTGTAGCTCAAATGGTCTTGCTTATCTGTATTGGATTCTGGCAAATGCGCCACTTGCGCGCTTTCTTTCAAGCCAAAAAACTGGTCTAAGTAACCATGTGTATATTCAGGCCTACCCACATCTATTGTGATAATCTTCTGTAAATGTAACATCTATGAGACGTGTCTGTGGAAACATCTCTAAATTTCACTTTTCATCTGTGTATT ]
[-] EMBL CD193581 [ GTGGAGTGTAGCTCAATTGGTCTTGCTTATCTGTATTGGATTCTGGCAAATGCGCCACTTGCGCGCTTTCTTTCAAGCCAAAAAACTGGTCTAAGTAACCATGTGTATATTCAGGCCTACCCACATCTATTGTGATAATCTTCTGTAAAAGTAACATCTATGAGACGTGTCTGTGGAAACATCTCTAAAATTCCCTTTTCATCTGTGTATT ]
[-] EMBL CD193556 [ GTGGAGTGTAGCTCAATTGGTCTTGCTTATCTGTATTGGATTCTGGCAAATGCGCCACTTGCGCGCTTTCTTTCAAGCCAAAAAACTGGTCTAAGTAACCATGTGTATATTCAGGCCTACCCTCATCTATTGTGATAATCTTCTGTAAATGTAACATCTATGAGACGTGTCTGTGGAAACATCCCTAAATTTCACTTTTCATCTGTGTATT ]
consensusID : consensus_10192#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 749 fasta sequence
[CGAAGCTGAGCGCATCATTGGCTTTACACGTCAGCTATGGAATTAACTTTTGTTGTCATATTTTGTTTATGTATTGAACTTTCACAAGGCATTTTCTTTCATATGAAAGAAACCGAAGAACGGTGCTTCTTGGAGGATGTTCCGGAGGACACTCTAGTGGCAGGGAATTATAAATTATTGGCTTCTAAAGGAAAACATTTTGAACGCTCCAAAGACTTGGGAGTCAAAGTTAAGGTTATTGATCCATATGACCAAATTTTGCTCGATCGTGTGTATTCTTCAGAAGGGCGGTTTGTTTTTACTGCTCATAGACCTGGCGAATACAAAATATGCATTTCATCTGATTCC-GG-TGCTTGGTTTGGTGGATCACAATTGAGAGTACACCTCGACATTGCAGTTGGTGACCATGCTTTGAA-TTATCAAGAAATAGCTACAAAGGATAGATTAAACGATATTCAGCTTCGGGTTCGTCAGCTACTTGATCAGGTGCAAAGCATAGCGAAAGACCAAAATTATCAGCGTGTGAGAGAAGAAAGTTTCCGGTCACTAAGCGAAAGCACGAACCGACGCGTGACTTGGTGGAGTGTAGCTCAATTGGTCTTGCTTATCTGTATTGGATTCTGGCAAATGCGCCACTTGCGCGCTTTCTTCCAAGCCAAAAAACTGGTCTAAGTAACCATGTGTATATTCAGGCCTACCCACATCTATTGTGATAATCTTCTGTAAATGTAACATCTATGAGACGTGTC]
[+] EMBL CD181694 [CGAAGCTGAGCGCATCATTGGCTTTACACGTCAGCTATGGAATTAACTTTTGTTGTCATATTTTGTTTATGTATTGAACTTTCACAAGGCATTTTCTTTCATATGAAAGAAACCGAAGAACGGTGCTTCTTGGAGGATGTTCCGGAGGACACTCTAGTGGCAGGGAACTATAAATTATTGGCTTCTAAAGGAAAACATTTTGAACGCTCCAAAGACTTGGGAGTCAAAGTTAAGGTTATTGATCCATATGACCAAGTTTTGCTCGATCGTGTGTATTCTTCAGAAGGGCGGTTTGTTTTTACTGCTCATAGACCTGGCGAATACAAAATATGCATTTCATCTGA TCC GGNTGCTTTGGTTGGTGGATCACAATTGAGAGTACACCTCGACATTGCAGTTGGTGACCATGCTTTGAATTTATC AGAANTAGCTACAAGGNATAGAT ]
[+] EMBL CD181289 [ TGGCTTTACACGTCAGCTATGGAATTAACTTTTGTTGTCATATTTTGTTTATGTATTGAACTTTCACAAGGCATTTTCTTTCATATGAAAGAAACCGAGGAACGGTGCTTCTTGGAGGATGTTCCGGAGGACACTCTAGTGGCAGGGAATTATAAATTATTGGCTTCTAAAGGAAAACATTTTGAACGCTCCAAAGACTTGGGAGTCAAAGTTAAGGTTATTGATCCATATGACCAAATTTTGCTCGATCGTGTGTATTCTTCAGAAGGGCGGTTTGTTTTTACTGCTCATAGACCTGGCGAATACAAAATATGCATTTCATCTGATTCCGGG TGCTTGTTNNNGT GATCACAATTGGGAGTACACCTCGACATTGCAGTTGGTGACCATGCTTTGAT TNATCANGAAATAGCTACAAAGGATNGAT ]
[+] EMBL BF936097 [ CTTTACACGTCAGCTATGGAATTAACTTTTGTTGTCATATTTTGTTTATGTATTGAACTTTCACAAGGCATTTTCTTTCATATGAAAGAAACCGAAGAACGGTGCTTCTTGGAGGATGTTCCGGAGGACACTCTAGTGGCAGGGAATTATAAATTATTGGCTTCTAAAGGAAAACATTTTGAACGCTCCAAAGACTTGGGAGTCAAAGTTAAGGTTATTGATCCATATGACCAAATTTTGCTCGATCGTGTGTATTCTTCAGAAGGGCGGTTTGTTTTTACTGCTCATAGACCTGGCGAATACAAAATATGCATTTCATCTGATTCC GG TGCTTGGTTTGGTGGATCACAATTGAGAGTACACCTCGACATTGCAGTTGGTGACCATGCTTTGAA TTATCAAGAAATAGCTACAAAGGATAGATTAAACGATATTCAGCTTCGGGTTCGTCAG ]
[-] EMBL CD128074 [ TGCTTGGTTTGGTGGATCACAATTGAGAGTACACCTCGACATTGCAGTTGGTGACCATGCTTTGAA TTATCAAGATATAGCTACAAAGGATAGATTAAACGATATTCAGCTTCGGGTTCGTCAGCTACTTGATCAGGTGCAAAGCATAGCGAAAGACCAAAATTATCAGCGTGTGAGAGAAGAAAGTTTCCGGTCACTAAGCGAAAGCACGAACCGACGCGTGACTTGGTGGAGTGTAGCTCAATTGGTCTTGCTTATCTGTATTGGATTCTGGCAAATGCGCCACTTGCGCGCTTTCTTCCAAGCCAAAAAACTGGTCTAAGTAACCATGTGTATATTCAGGCCTACCCACATCTATTGTGATAATCTTCTGTAAATGTAACATCTATGAGACGTGTC]
consensusID : consensus_10192#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence
[CATCATTGGCTTTACACGTCAGCTATGGAATTAACTTTTGTTGTCATATTTTGTTTATGTATTGNAACTTTCACAAGGNNATTTTCTTTCATATGAAAGAAACCGAAGAACGGTGCTTCTTGGAGGATGTTCCGGAGGGACACTCTAGTGGCAGGTATACATATTTCTGGGAAATAATTCTCTCTCACAGGGGAATTATAAATTATTGGCTTCTAAAGGAAAACATTTTGGAACGNCTCCAAAGACTTGGGAGTCAAAGTTAAGGTTATTGATCCATATGACCAAATTTTGCTCGATCGTGTGTATTCTTCAGAAGGGCGGNTTGGTTTTTACTGCTCATAGGACCTGGGCGGAATACAAAATATGCATTTCATCTGATTCCCGGTGGCTTGGTTTGGGNGGGATCACAATTGGAGAGTAC]
[+] EMBL SM751 [CATCATTGGCTTTACACGTCAGCTATGGAATTAACTTTTGTTGTCATATTTTGTTTATGTATTGNAACTTTCACAAGGNNATTTTCTTTCATATGAAAGAAACCGAAGAACGGTGCTTCTTGGAGGATGTTCCGGAGGGACACTCTAGTGGCAGGTATACATATTTCTGGGAAATAATTCTCTCTCACAGGGGAATTATAAATTATTGGCTTCTAAAGGAAAACATTTTGGAACGNCTCCAAAGACTTGGGAGTCAAAGTTAAGGTTATTGATCCATATGACCAAATTTTGCTCGATCGTGTGTATTCTTCAGAAGGGCGGNTTGGTTTTTACTGCTCATAGGACCTGGGCGGAATACAAAATATGCATTTCATCTGATTCCCGGTGGCTTGGTTTGGGNGGGATCACAATTGGAGAGTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10192#1 ------------------------------------------------------------
consensus_10192#2 ------------------------------------------------------------
consensus_10192#0 TTGAGAAATACTTCTCGGACCGTATTGTTAGTTCTGACAGTTAAACTTCTAAGGCTGGGA 60
consensus_10192#1 ------------------------------------------------------------
consensus_10192#2 ------------------------------------------------------------
consensus_10192#0 AGTGTTTATTAGTTGACTTGAAAGTTGGTATCTAACAATAATTGTACGTCCTTGTTATGC 120
consensus_10192#1 ------------------------------------------------------------
consensus_10192#2 ------------------------------------------------------------
consensus_10192#0 CTTTCTTTCTAGGTGTATTCTTCAGAAGGGCGGTTTGTTTTTACTGCTCATAGACCTGGC 180
consensus_10192#1 ------------------CGAAGCTGAGCGCATCATTGGCTTTACACGTCAGCTATGGAA 42
consensus_10192#2 ------------------------------CATCATTGGCTTTACACGTCAGCTATGGAA 30
consensus_10192#0 GAATACAAAATATGCATTTCATCTGATTCCGGTGCTTGGTTTGGTGGATCACAATTGGTA 240
* **** ** *** *** *
consensus_10192#1 T--TAACTTTTGTTGTCATATTTTGTTTATGTATTGAA-CTTTCACAAGGCA-TTTTCTT 98
consensus_10192#2 T--TAACTTTTGTTGTCATATTTTGTTTATGTATTGNAACTTTCACAAGGNNATTTTCTT 88
consensus_10192#0 GGATATCCGCTACGTTCATAATTT-TCTAGAGAGTACA-CCTCGACATTGCAGTTGGTGA 298
** * * ***** *** * ** * * * * * *** * **
consensus_10192#1 TCATA-TGAAAGAAACCGAAGAACGGTGCTTCTTGGAGGATGTTCCGGAGG-ACACTCTA 156
consensus_10192#2 TCATA-TGAAAGAAACCGAAGAACGGTGCTTCTTGGAGGATGTTCCGGAGGGACACTCTA 147
consensus_10192#0 CCATGCTTTGAATTATCAAGAAATAGC----TACAAAGGATAGATTAAACG-ATATTC-A 352
*** * * * * * ** * ***** * * * * ** *
consensus_10192#1 GTGGCAGG-------------------------------------GAATTATAAATTATT 179
consensus_10192#2 GTGGCAGGTATACATATTTCTGGGAAATAATTCTCTCTCACAGGGGAATTATAAATTATT 207
consensus_10192#0 GCTTCGGGTTCGTCAGCTACTTGATCAGGTGCAAAGCATAGCGAAAGACCA-AAATTATC 411
* * ** * * *******
consensus_10192#1 GGCTTCTAAAGGAAAACATTTTGAA--CGCTCCAAAGACTTGGGAGTCAAAGTTAAGGTT 237
consensus_10192#2 GGCTTCTAAAGGAAAACATTTTGGAACGNCTCCAAAGACTTGGGAGTCAAAGTTAAGGTT 267
consensus_10192#0 AGCGTGTGAGAGAAGAAAGTTTCCGGTCACTAAGCGAAAGCACGAACCGACGCGTGACTT 471
** * * * *** * * *** ** * ** * * * **
consensus_10192#1 ATTGATCCATA--TGACCAAATTTTGCTCGATCGTGT-GTATTCTT-CAGAAGGGCGGTT 293
consensus_10192#2 ATTGATCCATA--TGACCAAATTTTGCTCGATCGTGT-GTATTCTT-CAGAAGGGCGGNT 323
consensus_10192#0 GGTGGAGTGTAGCTCAATTGGTCTTGCTTATCTGTATTGGATTCTGGCAAATGCGCCACT 531
** ** * * * ***** ** * * ***** ** * * ** *
consensus_10192#1 TG-----TTTTTACTGCTCATAG-ACCTGGC--GAATA-CAAAATATGCATTTCATCTGA 344
consensus_10192#2 TGG----TTTTTACTGCTCATAGGACCTGGGCGGAATA-CAAAATATGCATTTCATCTGA 378
consensus_10192#0 TGCGCGCTTTCTTCCAAGCCAAAAAACTGGTCTAAGTAACCATGTGTATATTCAGGCCTA 591
** *** * * * * * **** * ** * * * * *** * *
consensus_10192#1 TTCC-G------GTG-CTTGGTTTGGTGG--ATCACAATTG-AGAGTACACCTCGACATT 393
consensus_10192#2 TTCCCG------GTGGCTTGGTTTGGGNGGGATCACAATTGGAGAGTAC----------- 421
consensus_10192#0 CCCACATCTATTGTGATAATCTTCTGTAAATGTAACATCTATGAGACGTGTCTGTGGAAA 651
* *** ** * * *** *
consensus_10192#1 GCAGTTGGTGACCATGCTTTGAATTATCAAGAAATAGCTACAAAGGATAGATTAAACGAT 453
consensus_10192#2 ------------------------------------------------------------
consensus_10192#0 CATCTCTAAATTTCACTTTTCATCTGTGTATTTGCATTGGTGTCAGTTCGTTTATTAACT 711
consensus_10192#1 ATTCAGCTTCGGGTTCGTCAGCTACTTGATCAGGTGCAAAGCATAGCGAAAGACCAAAAT 513
consensus_10192#2 ------------------------------------------------------------
consensus_10192#0 ATCCACTAATGAAGATCGTATGTACTTAGTATTTCCTGAAAGCTCTGTTCCTTTAATAAC 771
consensus_10192#1 TATCAGCGTGTGAGAGAAGAAAGTTTCCGGTCACTAAGCGAAAGCACGAACCGACGCGTG 573
consensus_10192#2 ------------------------------------------------------------
consensus_10192#0 TTTCACGATTC------------------------------------------------- 782
consensus_10192#1 ACTTGGTGGAGTGTAGCTCAATTGGTCTTGCTTATCTGTATTGGATTCTGGCAAATGCGC 633
consensus_10192#2 ------------------------------------------------------------
consensus_10192#0 ------------------------------------------------------------
consensus_10192#1 CACTTGCGCGCTTTCTTCCAAGCCAAAAAACTGGTCTAAGTAACCATGTGTATATTCAGG 693
consensus_10192#2 ------------------------------------------------------------
consensus_10192#0 ------------------------------------------------------------
consensus_10192#1 CCTACCCACATCTATTGTGATAATCTTCTGTAAATGTAACATCTATGAGACGTGTC 749
consensus_10192#2 --------------------------------------------------------
consensus_10192#0 --------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||