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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10193#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1179 fasta sequence
[CCTCCGAGGCCAGAATTCGGCACGAGGGGTTACGATTATCTCTAGTCTTCACCCTTTTATAGTAAATAGTACTTCTTAGCTAAACACAAGATCCAATCAAAAGTTGTAAACTACACAAATGATGGATCCAAGTGCTCCTGTTGTACCCCAAGAAATAAGTACTGATCAACCTGTTCTATCAGATGAGGAAAATGCAAGGCTTCAAGTTGAATTGTCTCAGGTTGAAGAAGAAATTCGTCTACTTCAAGAAACTCTTGTTGTTAAGCAGCGCCGACTCAATGAGATAAAAAAGGCTCTTGGTTTTACCACACTTTCCACATTGCAGTATGATCTCATGGAAGGTATTCATAAATTGGAAGATACAGAAGCATATATCAAAACAAGTGAACTTTTAAGTAAAGCTAAAGATAAAACCGTCAATGTAGCTCAAGATGCTAAAGAAAAAGTCGAATCAACAATTTCTGCCATTCGGAATTCAGAGGTTGTGAAATCACTGAATGATAAAGTTGGTTCTGCTTATTCAACAGTTAAAGATGTTATAATTCATTCGACGTATGGACATCCACCAGACGATGGAACTGAATATGTTGGTAATAATAATACCAAGAAATAATGTTAGATTATTATTATTATATTCCAAATGCCGTCCATTCACCAACCTGCAATGTCGTTGCCATTTCACTTTTTGTGTATAAATTATTGTACACTGTTCTGTTCATTATTTAGTTAAGTTTTTCTTCGTATTTTTCCTGATTCAAACGCTAATTTTTTTATGCGTGTACTGATACCATGCATGATTTATATATGTAAGAAAAAATGAAAAAGCTAATGTCACTGATTATTTCTAATTGCTTTCAAATAAAAAGTTAGTTGATAATTTGTAATCGCTTTCAGTTTTACATAAACTATGATTCACTGACGTTAATTTACAGTTTCGAGCTACTAATGTGTGTTACCTATAACCTACTGTGCTTACTTATATGTATCATTTTCTAATCTTCATATCAATCTTCTTAATTATAGGACTTCTCTGTCATTTAAAGTTACTGCCACTACTCAACACTAGCCTCACTTTCTAAAATTATCGCACCACAGTTCTATCGATATTTTTACCTGATCTATACATGCAAGTTTTTGTTTATCTTCTTAAAACTAGTCACTCCAATATATATTTCATCT]
[+] EMBL CD082006 [CCTCCGAGGCCAGAATTCGGCACGAGGGGTTACGATTATCTCTAGTCTTCACCCTTTTATAGTAAATAGTACTTCTTAGCTAAACACAAGATCCAATCAAAAGTTGTAAACTACACAAATGATGGATCCAAGTGCTCCTGTTGTACCCCAAGAAATAAGTACTGATCAACCTGTTCTATCAGATGAGGAAAATGCAAGGCTTCAAGTTGAATTGTCTCAGGTTGAAGAAGAAATTCGTCTACTTCAAGAAACTCTTGTTGTTAAGCAGCGCCGACTCAATGAGATAAAAAAGGCTCTTGGTTTTACCACACTTTCCACATTGCAGTATGATCTCATGGAAGGTATTCATAAATTGGAAGATACAGAAGCATATATCAAAACAAGTGAACTTTTAAGTAAAGCTAAAGATAAAACCGTCAATGTAGCTCAAGATGCTAAAGAAAAAGTCGAATCAACAATTTCTGCCATTCGGAATTCAGAGGTTGTGAAATCACTGAATGATAAAGTTGGTTCTGCTTATTCAACAGTTAAAGATGTTATAATTCATTCGACGTATGGACATCCACCAGACGATGGAACTGAATATGTTGGTAATAATAATACCAAGAAATAATGTTAGATTATTATTATTATATTCCNAATGCCGTNCATTCACC ]
[+] EMBL AA960696 [ AAAATGCAAGGCTTCAAGTTGAATTGTCTCAGGTTGAAGAAGAAATTCGTCTACTTCAAGAAACTCTTGTTGTTAAGCAGCGCGGACTCAATGAGATAAAAAAGGCTCTTGGTTTTACCACACTTTCCACATTGCAGTATGATCTCATGGAAGGTATTCATAAATTGGAAGATACAGAAGCATATATCAAAACAAGTGAACTTTTAAGTAAAGCTAAAGATAAAACCGTCAATGTAGCTC AGATGCTAAAGAAAAAG CGAATC ACAATTTCTGCCATTCGGAAT ]
[+] EMBL CD062974 [ GCTCTTGGTTTTACCACACTTTCCACATTGCAGTATGATCTCATGGAAGGTATTCATAAATTGGAAGATACAGAAGCATATATCAAAACAAGTGAACTTTTAAGTAAAGCTAAAGATA ]
[+] EMBL CD063189 [ GCTCTTGGTTTTACCACACTTTCCACATTGCAGTATGATCTCATGGAAGGTATTCATAAATTGGAAGATACAGAAGCATATATCAAAACAAGTGAACTTTTAAGTAAAGCTAAAGATAAAACCGTCAATGTAGCTCAAGATGCTAAAGAAAAAGTCGAATCAACAATTTC ]
[-] EMBL CD063080 [ CTCTTGGTTTTACCACACTTTCCACATTGCAGTATGATCTCATGGAAGGTATTCATAAATTGGAAGATACAGAAGCATATATCAAAACAAGTGAACTTTTAAGTAAAGCTAAAGATAAAACCGTCAATGTAGCTCAAGATGCTAAAGAAAAAGTCGAATCAACAATTTCT ]
[-] EMBL CD063054 [ tcCCACATTGCAGTATGATCTCATGGAAGGTATTCATAAATTGGAAGATACAGAAGCATATATCAAAACAAGTGAACTTTTAAGTAAAGCTAAAGATAAAACCGTCAATGTAGCTCAAGATGCTAAAGAAAAAGTCGAATCAACAATTTCTGCCATTCGGAATTCAGAGGTTGTGAAATCACTGAATGATAAAGTTGGTTCTGCTTATTCAACAGTTAAAGATGTTATAATTCATTCGACGTATGGACA ]
[+] EMBL SMAA69200 [ GCTCAAGATGCTAAAGAAAAAGTCGAATCAACAATTTCTGCCATTCGGAATTCAGAGGTTGTGAAATCACTGAATGATAAAGTTGGTTCTGCTTATTCAACAGTTAAAGATGTTATAATTCATTCGACGTATGGACATCCACCAGACGATGGAACTGAATATGTTGGTAATAATAATACCAAGAAATAATGTTAGATTATTATTATTATATTCCAAATt ]
[-] EMBL CD135609 [ ATGGAACTGAATATGTTGGTAATAATAATACCAAGAAATAATGTTAGATTATTATTATTATATTCCAAATGCCGTCCATTCACCAACCTGCAATGTCGTTGCCATTACACTTTTTGTGTATAAATTATTGTACACTGTTCTGTTCATTATTTAGTTAAGTTTTTCTTCGTATTTTTCCTGATTCAAACGCTAATTTTTTTATGCGTGTACTGATACCATGCATGA TTATATATGTAAGAAAAAATG ]
[-] EMBL CD160389 [ TAACGTTAGATTATTATTATTATATTCCAAATGCCGTCCATTCACCAACCTGCAATGTCGTTGCCATTTCACTTTTTGTGTATAAATTATTGTACACTGTTCTGTTCATTATTTAGTTAAGTTTTTCTTCGTATTTTTCCTGATTCAAACGCTAATTTTTTTATGCGTGTACTGATACCATGCATGATTTATATATGTAAGAAGAAATGAAAAAGCTAATGTCACTGATTATTTCTAGTTGCTTTCAAATAAAAAGTTAGTTGATAATTTGTAATCGCTTTCAGTTTTACATAAACTATGATTCACTGACGTTAATTTACAGTTTCGAGCTACTAATGTGTGTTACCTATAACCTACTGTGCTTACTTATATGTATCATTTTCTAATCTTCATATCAATCTTCTTAATTATAGGACTTCTCTGTCATTTAAAGTTACTGCCACTA ]
[-] EMBL CD075619 [ GATTA TATTATTATATTCCAAATGCCGTCCATTCACCAACCTGCAATGTCGTTGCCATTTCACTTTTTGTGTATAAATTATTGTACACTGTTCTGTTCATTATTTAGTTAAGTTTTTCTTCGTATTTTTCCTGATTCAAACGCTAATTTTTTTATGCGTGTACTGATACCATGCATGATTTATATATGTAAGAAAAAATGAAAAAGCTAATGTCACTGATTATTTCTAATTGCTTTCAAATAAAAAGTTAGTTGATAATTTGTAATCGCTTTCAGTTTTACATAAACTATGATTCACTGACGTTAATTTACAGTTTCGAGCTACTAATGTGTGTTACCTATAACCTACTGTGCTTACTTATATGTATCATTTTCTAATCTTCATATCAATCTTCTTAATTATAGGACTTCTCTGTCATTTAAAGTTACTGCCACTACTCAACACTAGCCTCACTTTCTAAAATTATCGCACCACAGTTCTATCGATATTTTTACCTGATCTATACATGCAAGTTTTTGTTTATCTTCTTAAAACTAGTCACTCCAATATATATTTCATCT]
[-] EMBL CD160078 [ TCGTTGCCATTTCACTTTTTGTGTATAAATTATTGTACACTGTTCTGTTCATTATTTAGTTAAGTTTTTCTTCGTATTTTTCCTGATTCAAACGCTAATTTTTTTATGCGTGTACTGATACCATGCATGATTTATATATGTAAGAAAAAATGAAAAAGCTAATGTCACTGATTATTTCTAATTGCTTTCAAATAAAAAGTTAGTTGATAATTTGTAATCGCTTTCAGTTTTACATAAACTATGATTCACTGACGTTAATTTACAGTTTCGAGCTACTAATGTGTGTTACCTATAACCTACTGTGCTTACTTATATGTATCATTTTCTAATCTTCATATCAATCTTCTTAATTATAGGACTTCTCTGTCATTTAAAGTTACTGCCACTA ]
[-] EMBL CD160267 [ TCGAGCTACTAATGTGTGTTACCTATAACCTACTGCGCTTACTTATATGTATCATTTTCTAATCTTCATATCAATCTTCTTAATTATAGGACTTCTCTGTCATTTAAAGGTACTGCCACTA ]
consensusID : consensus_10193#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 683 fasta sequence
[CAGCCGCCTGACCTCCCAGTATTACGGTGCTCAATTTTCGTATTGTCGTTATTTTTCGCTTGTATGCCCACCACTCTTTATCATTTGCTTTAAATATTATTTAACACAATCCCTATGCTTACTCAGCAGTCGACCCACTGTGTCTCTTGATTTCTTTTACAGATTATCTCTAGTCTTCACCCTTTTATAGTAAATAGTACTTCTTAGCTAAACACAAGATCCAATNCAAAGTTGTAAACTACACAAATGATGGATCCAAGTGCTCCTGTTGTACCCCCAGAGAATATAGTACTGATCTAACCTGTGTCTCATCTCGATATGGGGAATATGCGAGGCTTCAAGTTGTGAATTTGTCTCACGTGTAAGAAGAAGATACGTCTACTACTAAGAAGACTACTTCGTTGGTTGAAGCAGCAGCAGACGTCTATGATGATAATAAAAGGCGCTTGGTTGTTACACAATTATCCACATTGCAGTATGATCATCATGGAGGGTACTTCATTAATTAGGAGGATGCAGGAGCATCTTTCAAAACAAGGTGATCTTTTTAGTAAGGCTAAAGATAACACCGCCATGTAGCTCAAGATGATAAAAAAAAGTCGATCAACATTTCTGCCATGCGGAATTCAGAGGTTGTGAATCACGAATGAAAAGTGGTCCTGCTATCACAAGGAAAGATGTTT]
[+] EMBL CD090405 [CAGCCGCCTGACCTCCCAGTATTACGGTGCTCAATTTTCGTATTGTCGTTATTTTTCGCTTGTATGCCCACCACTCTTTATCATTTGCTTTAAATATTATTTAACACAATCCCTATGCTTACTCAGCAGTCGACCCACTGTGTCTCTTGATTTCTTTTACAGATTATCTCTAGTCTTCACCCTTTTATAGTAAATAGTACTTCTTAGCTAAACACAAGATCCAATNCAAAGTTGTAAACTACACAAATGATGGATCCAA ]
[+] EMBL AI447063 [ ATCTCTAGTCTGAACCCTTTTATAGTAAATAGTACTTCTTAGCTAAACACAAGATCCAATCAAAAGTTGTAAACTACACAAATGATGGATCCAAGTGCTCCTGTTGTACCCCCAGAGAATATAGTACTGATCTAACCTGTGTCTCATCTCGATATGGGGAATATGCGAGGCTTCAAGTTGTGAATTTGTCTCACGTGTAAGAAGAAGATACGTCTACTACTAAGAAGACTACTTCGTTGGTTGAAGCAGCAGCAGACGTCTATGATGATAATAAAAGGCGCTTGGTTGTTACACAATTATCCACATTGCAGTATGATCATCATGGAGGGTACTTCATTAATTAGGAGGATGCAGGAGCATCTTTCAAAACAAGGTGATCTTTTTAGTAAGGCTAAAGATAACACCGCCATGTAGCTCAAGATGATAAAAAAAAGTCGATCAACATTTCTGCCATGCGGAATTCAGAGGTTGTGAATCACGAATGAAAAGTGGTCCTGCTATCACAAGGAAAGATGTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10193#0 ------------------------------------------------------------
consensus_10193#1 CAGCCGCCTGACCTCCCAGTATTACGGTGCTCAATTTTCGTATTGTCGTTATTTTTCGCT 60
consensus_10193#0 ------------------------------------------------------------
consensus_10193#1 TGTATGCCCACCACTCTTTATCATTTGCTTTAAATATTATTTAACACAATCCCTATGCTT 120
consensus_10193#0 CCTCCGAGGCCAG---AATTCGGCACGAGGGGT----TAC-GATTATCTCTAGTCTTCAC 52
consensus_10193#1 ACTCAGCAGTCGACCCACTGTGTCTCTTGATTTCTTTTACAGATTATCTCTAGTCTTCAC 180
*** * * * * * * * * * * *** *******************
consensus_10193#0 CCTTTTATAGTAAATAGTACTTCTTAGCTAAACACAAGATCCAATCAAAAGTTGTAAACT 112
consensus_10193#1 CCTTTTATAGTAAATAGTACTTCTTAGCTAAACACAAGATCCAATNCAAAGTTGTAAACT 240
********************************************* *************
consensus_10193#0 ACACAAATGATGGATCCAAGTGCTCCTGTTGTACCCCAAGA-AATA-AGTACTGATC-AA 169
consensus_10193#1 ACACAAATGATGGATCCAAGTGCTCCTGTTGTACCCCCAGAGAATATAGTACTGATCTAA 300
************************************* *** **** ********** **
consensus_10193#0 CCTGT--TCTATC---AGATGAGGAAAATGCAAGGCTTCAAGTTG---AATTGTCTCAGG 221
consensus_10193#1 CCTGTGTCTCATCTCGATATGGGGAATATGCGAGGCTTCAAGTTGTGAATTTGTCTCACG 360
***** *** * *** **** **** ************* * ******** *
consensus_10193#0 TTGAAGAAGAA-ATTCGTCTACTTC--AAGAAACT--CTTGTTGTT--AAGCAGC-GCCG 273
consensus_10193#1 TGTAAGAAGAAGATACGTCTACTACTAAGAAGACTACTTCGTTGGTTGAAGCAGCAGCAG 420
* ******** ** ******** * * * *** * **** * ******* ** *
consensus_10193#0 AC-TCAATGA-GATAA-AAAAGGCTCTTGGTTTTACCACACTT-TCCACATTGCAGTATG 329
consensus_10193#1 ACGTCTATGATGATAATAAAAGGCGCTTGGTTGTTACACAATTATCCACATTGCAGTATG 480
** ** **** ***** ******* ******* * **** ** ****************
consensus_10193#0 ATC-TCATGGAAGGTA-TTCATAAATT-GGAAGATACAGAAGCATATATCAAAACAAG-T 385
consensus_10193#1 ATCATCATGGAGGGTACTTCATTAATTAGGAGGATGCAGGAGCATCTTTCAAAACAAGGT 540
*** ******* **** ***** **** *** *** *** ***** * ********** *
consensus_10193#0 GAACTTTTAAGTAAAGCTAAAGATAAAACCGTCAATGTAGCTCAAGATGCTAAAGAAAAA 445
consensus_10193#1 GATCTTTTTAGTAAGGCTAAAGATAACACCGCCA-TGTAGCTCAAGATGATAAA-AAAAA 598
** ***** ***** *********** **** ** ************** **** *****
consensus_10193#0 GTCGAATCAACAATTTCTGCCATTCGGAATTCAGAGGTTGTGAAATCACTGAATGATAAA 505
consensus_10193#1 GTCGA-TCAACA-TTTCTGCCATGCGGAATTCAGAGGTTGTGAA-TCAC-GAATGAAAAG 654
***** ****** ********** ******************** **** ****** **
consensus_10193#0 GTTGGTTCTGCTTATTCAACAGTTAAAGATGTTATAATTCATTCGACGTATGGACATCCA 565
consensus_10193#1 --TGGTCCTGCT-ATC--ACAAGGAAAGATGTTT-------------------------- 683
**** ***** ** *** *********
consensus_10193#0 CCAGACGATGGAACTGAATATGTTGGTAATAATAATACCAAGAAATAATGTTAGATTATT 625
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 ATTATTATATTCCAAATGCCGTCCATTCACCAACCTGCAATGTCGTTGCCATTTCACTTT 685
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 TTGTGTATAAATTATTGTACACTGTTCTGTTCATTATTTAGTTAAGTTTTTCTTCGTATT 745
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 TTTCCTGATTCAAACGCTAATTTTTTTATGCGTGTACTGATACCATGCATGATTTATATA 805
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 TGTAAGAAAAAATGAAAAAGCTAATGTCACTGATTATTTCTAATTGCTTTCAAATAAAAA 865
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 GTTAGTTGATAATTTGTAATCGCTTTCAGTTTTACATAAACTATGATTCACTGACGTTAA 925
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 TTTACAGTTTCGAGCTACTAATGTGTGTTACCTATAACCTACTGTGCTTACTTATATGTA 985
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 TCATTTTCTAATCTTCATATCAATCTTCTTAATTATAGGACTTCTCTGTCATTTAAAGTT 1045
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 ACTGCCACTACTCAACACTAGCCTCACTTTCTAAAATTATCGCACCACAGTTCTATCGAT 1105
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 ATTTTTACCTGATCTATACATGCAAGTTTTTGTTTATCTTCTTAAAACTAGTCACTCCAA 1165
consensus_10193#1 ------------------------------------------------------------
consensus_10193#0 TATATATTTCATCT 1179
consensus_10193#1 --------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||