These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10197#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1527 fasta sequence [TNTAGTATGATTGGTTACAAAAAGACGATAGATATAGAGACCGAACAAACGGAAAAGAGTTGACCGGNTAAAGAATGAAGAAACTCGAAGTAAATATGACTTGGAGGTCGGAAGTGACAGAAAGAGTAAAATGTCGATAACCATGCATACATACATAAACAGACATATTTTGTTAAGAACTGCAAGAGAGAGAGGAAGAGGATAATAACAATACGAATAATGAAGTGGAAAATGTTGGTCAAGGTGCC-AAAAAAACATGACGGTATAGTATGTTAATTTGTGTATGCATTTATTTCCATAGAGAATGGGGAAACGAAGATCGAAATGAGACAGTTTGAAAGATAAGTTGATCACAATAATGCTCAACAGCTCCGATAAAAGCAAAGTAGGAATGTAGTATCTAGTATCTGACGGCATAAATAACTCTATAAATACCACTGACAAATAAACCATTAGAGAACTAAGAAGACAAAAAGAGAAAGAAACAAAACATCATCCAAATTAAACGAACACACGTGGTTTGTTCTGTTGCATGGCTAACAACGCTTGTGTAGCTTCATGTTGCTGTTGGAGAACCAACTGAGAAGCGTGCGCTTTTGGTTGCATAAAACCAACAATCTCAGTGTAATGTGATGATTCATCTCTACGCGTTGGATCAGCGAAAGCAGAAGAATAACCGTCACGAGGATGAATAGACGAACGATTATCGTCAAACCCATCTCCAACATTATCTAGACCTTGTGGGACAGAAGCAACAATTGGTCGTGAGTGTGGAGCTGGTTGTGTACTAGTCCCGAATAGAGTCATTGAAGACGAAGCAACACCATTACCACCACCAAGTGAAGTGCCAATACGCCCTCTCCTTGAGCTGACACTAGCATTGTGACCAGGACGAACATGATCGAAAGACAATTCCATATATTGTAATTCATTTACATTCGGAACTGTGCTTGGAGACATTTCATTCGAAGTCTGAGCATAAACCAAATCATAAGTATAATCAGGAACATCTTTGTAAATGTTATTTGGTAGTCCAGCCCCAGTCCCAGATAGTGTGGTAGTAGGGTAAGCACCACTAATTCCAGTTACGGGACTGTTCAGTGGATTACCTTGTCTAAGTAAAGCTCCGCCATCTGGTTG-TTTTTTAGCAATCATATCTTTGGAATAATTCTTTGGTTTTTTAGCTCCATTTGATGTGCTCCTTGAATTCCTG--GCCGCTTGACTTTGATGCCTTTTTTGTAATAGCATGGCACCGAATATAATCAATAATATGAGTAGTACACAAAAGCATATTCCAAGAGCTACCGCCCAACTAGTTGGTGATAAAACAGCCACTACAAATCGAGTACGAGTAATTGTTCCATTCAGTCCCAAGAATGTTGTATCGCCTGGAAGAACATTGCGAGCAGTACAACTCAGAAGAAGTTCAACGCCTGGAGTAGCGTTTGGTGCTAAATAAAATGTAGCTCCTTGTATACTATATTCGTCGGGTCTGAGACCTAGTTGACGATGCCTCTCGACGGTGGA] [-] EMBL CD183789 [TNTAGTATGATTGGTTACAAAAAGACGATAGATATAGAGACCGAACAAACGGAAAAGAGTTGACCGGNTAAAGAATGAAGAAACTCGAAGTAAATATGACTTGGAGGTCGGAAGTGACAGAAAGAGTAAAATGTCGATAACCATGCATACATACATAAACAGACATATTTTGTTAAGAACTGCAAGAGAGAGAGGAAGAGGATAATAACAATACGAATAATGAAGTGGAAAATGTTGGTCAAGGTGCC AAAAAAACATGACGGTATAGTATGTTAATTTGTGTATGCATTTATTTCCATAGAGAATGGGGAAACGAAGATCGAAATGAGACAGTTTGAAAGATAAGTTGATCACAATAATGCTCAACAGCTCCGATAAAAGCAAAGTAGGAATGTAGTATCTAGTATCTGACGGCATAAATAACTCTATAAATACCACTGACAAATAAACCATTAGAGAACTAAGAAGACAAAAAGAGAAAGAAACAAAACATCATCCAAATTAAAC ] [-] EMBL CD145089 [ cnAACGGAAAAGAGTTGACCGGTTAAAGAATGAAGAAACTCGAAGTAAATATGACTTGGAGGTCGGAAGTGACAGAAAGAGTAAAATGTCGATAACCATGCATACATACATAAACAGACATATTTTGTTAAGAACTGCAAGAGAGAGAGGAAGAGGATAATAACAATACGAATAATGAAGTGGAAAATGTTGGTCAAGGTGCCAAAAAAAACATGACGGTATAGTATGTTAATTTGTGTATGCATTTATTTCCATAGAGAATGGGGAAACGAAGATCGAAATGAGACAGTTTGAAAAATAAGTTGATCACAATAATGCTCAACAGCTCCGATAAAAGCAAAGTAGGAATGTAGTATCTAGTATCTGACGGCATAAATAACTCTATAAATACCACTGACAAATAAACCATTAGAGAACTAAGAAGACAAAAAGAGAAAGAAACAAAACATCATCCAAATTAAACGAACACg ] [+] EMBL CD193864 [ GTGGAAAATGTTGGTCAAGGTGCC AAAAAAACATGACGGTATAGTATGTTAATTTGTGTATGCATTTATTTCCATAGAGAATGGGGAAACGAAGATCGAAATGAGACAGTTTGAAAGATAAGTTGATCACAATAATGCTCAACAGCTCCGATAAAAGCAAAGTAGGAATGTAGTATCTAGTATCTGACGGCATAAATAACTCTATAAATACCACTGACAAATAAACCATTAGAGAACTAAGAAGGCAAAAAGAGAAAGAAACAAAACATCATCCAAATTAAACGAACACACGTGGTTTGTT ] [-] EMBL CD188043 [ ACTCTATAAATACCACTGACAAATAAACCATTAGAGAACTAAGAAGACAAAAAGAGAAAGAAACAAAACATCATCCAAATTAAACGAACACACGTGGTTTGTTCTGTTGCATGGCTAACAACGCTTGTGTAGCTTCATGTTGCTGTTGGAGGACCAACTGAGAAGCGTGCGCTTTTGGTTGCATAAAACCAACAATCTCAGTGTAATGTGATGATTCATCTCTACGCGTTGGATCAGCGAAAGCAGAAGAATAACCGTCACGAGGATGAATAGACGAACGATTATCGTCAAACCCATCTCCAAC ] [-] EMBL CD155446 [ AACCATTAGAGAACTAAGAAGACAAAAAGAGAAAGAAACAAAACATCATCCAAATTAAACGAACACACGTGGTTTGTTCTGTTGCATGGCTAACAACGCTTGTGTAGCTTCATGTTGCTGTTGGAGAACCAACTGAGAAGCGTGCGCTTTTGGTTGCATAAAACCAACAATCTCAGTGTAATGTGATGATTCATCTCTACGCGTTGGATCAGCGAAAGCAGAAGAATAACCGTCACGAGGATGAATAGACGAACGATTATCGTCAAACCCATCTCCAACATTATCTAGACCTTGTGGGACAGAAGCAACAATTGGTCGTGAGTGTGGAGCTGGTTGTGTACTAGTCCCGAATAGAGTCATTGAAGACGAAGCAACACCATTACCACCACCAAGTGAAGTGCCAATACGC ] [+] EMBL CD125119 [ GTTCTGTTGCATGGCTAACAACGCTTGTGTAGCTTCATGTTGCTGTTGGAGAACCAACTGAGAAGCGTGCGCTTTTGGTTGCATAAAACCAACAATCTCAGTGTAATGTGATGATTCATCTCTACGCGTTGGATCAGCAAAAGCAGTAGAATAACCGTCACGAGGATGAATAGACGAACGATTATCGTCAAACCCATCTCCAACATTATCTAGACCTTGTGGGACAGAAGCAACAATTGGTCGTGAGTGTGGAGCTGGTTGTGTACTAGTCCCGAATAGAGTCATTGAAGACGAAGCAACACCATTACCAACACCAAGTGAAGTGCCAGTACGCCCTCTCCTTGAGCTGACACTAGCATTGTGACCAGGACGAACATGATCGAAAGACAATTCCATATATTGTAATTCATTTACATTCGGAACT ] [-] EMBL CD067462 [ AGCAACAATTGGTCGTGAGTGTGGAGCTGGTTGTGTACTAGTCCCGAATAGAGTCATTGAAGACGAAGCAACACCATTACCACCACCAAGTGAAGTGCCAATACGCCCTCTCCTTGAGCTGACACTAGCATTGTGACCAGGACGAACATGATCGAAAGACAATTCCATATATTGTAATTCATTTACATTCGGAACTGTGCTTGGAGACATTTCATTCGAAGTCTGAGCATAAACCAAATCATAAGTATAATCAGGAACATCTTTGTAAATGTTATTTGGTAGTCCAGCCCCAGTCCCAGATAGTGTGGTAGTAGGGTAAGCACCACTAATTCCAGTTACGGGACTGTTCAGTGGATTACCTTGTCTAAGTAAAGCTCCGCCATCTGGTTG TTTTTTAGCAATCATATCTTTGGAATAATTCTTTGGTTTTTTAGCTCCATTTGATGTGCTCCTTGAATTCCTGATTCCACTTG ] [+] EMBL CD189715 [ TTGAAGACGAAGCAACGCCATTACCACCACCAAGTGAAGTGCCAATACGCCCTCTCCTTGAGCTGACACTAGCATTGTGACCAGGACGAACATGATCGAAAGACAATTCCATATATTGTAATTCATTTACATTCGGAACTGTGCTTGGAGACATTTCATTCGAAGTCTGAGCATAAACCAAATCATAAGTATAATCAGGAACATCTTTGTAAATGTTATTTGGTAGTCCAGCCCCAGTCCCAGATAGTGTGGTAGTAGGGTAAGCACCACTAATTCCAGTTACGGGACTGTTCAGTGGATTACCTTGTCTAAGTAAAGCTCCGCCATCTGGTTG TTTTTTAGCAATCATATCTTTGGAATAATTCTTTGGTTTTTTAGCTCCATTTGATGTGCTCCTTGAATTCCTG GCCGCTTGACTTTGATGCCTTTTTTGTAATAGCATGGCACCGAATATAATC ] [-] EMBL CD123097 [ ACGAAGCAACACCATTACCACCACCAAGTGAAGTGCCAATACGCCCTCTCCTTGAGCTGACACTAGCATTGTGACCAGGACGAACATGATCGAAAGACAATTCCATATATTGTAATTCATTTACATTCGGAACTGTGCTTGGAGACATTTCATTCGAAGTCTGAGCATAAACCAAATCATAAGTATAATCAGGAACATCTTTGTAAATGTTATTTGGTAGTCCAGCCCCAGTCCCAGATAGTGTGGTAGTAGGGTAAGCACCACTAATTCCAGTTACGGGACTGTTCAGTGGATTACCTTGTCTAAGTAAAGCTCCGCCATCTGGTTG TTTTTTAGCAATCATATCTTTGGAATAATTCTTTGGTTTTTTAGCTCCATTTGATGTGCTCCTTGAATTCCTG GCCGCTTGACTTTGATGCCTTTTTTGTAATAGCATGGCACCGAATATAATCAATAATATGAGTAGTACACAAAAGCATATTCCAAGA ] [+] EMBL CD159409 [ CATTCGAAGTCTGAGCATAAACCAAATCATAAGTATAATCAGGAACATCTTTGTAAATGTTATTTGGTTGTCCAGCCCCAGTCCCAGATAGTGTGGTAGTAGGGTAAGCACCACTAATTCCAGTTACGGGACTGTTCAGTGGATTACCTTGTCTAAGTAGAGCTCCGCCATCTGGTTG TTTTTTAGCAATCATATCTTTGGAATAATTCTTTGGTTTTTTAACTCCATTTGATGTGCTCCTTGAATTCCTG GCCGCTTGACTTTGATGCCTTTTTTGTAATAGCATGGCACCGAATATAATCAATAATATGAGTAGTACACAAAAGCATATTCCAAGAGCTACCGCCCAACTAGTTGGTGATAAAACAGCCACTACAAATCGAGTACGAGTAATTGTTCCATTCAGTCCCAAGAATGTTGTATCGCCTGGAAGAACATTGCGAGCAGTACAACTCAAANGAAGTTCAACGCCTGGAGTAGCGTTTGGTGCTAAAT ANATGTAGCTCCTTGTATACTATATTCGTCGGGTCTGAGACCTAGTTGACGATGCCTCTCGAC ] [-] EMBL CD170682 [ GGTTGTTTTTTTAGCAATCATATCTTTGGAATAATTCTTTGNTTTTTTAGCTCCATTTGATGTGCTCCTTGAACTCCTG GCCGCTTGACTTTGATGCCTTTTTTGTAATAGCATGGCACCGAATATAATCAATAATATGAGTAGTACACAAAAGCATATTCCAAGAGCTACCGCCCAACTAGTTGGTGATAAAACAGCCACTACAAATCGAGTACGAGTAATTGTTCCATTCAGTCCCAAGAATGTTGTATCGCCTGGAAGAACATTGCGAGCAGTACAACTCAGAAGAAGTTCAACGCCTGGAGTAGCGTTTGGTGCTAAATAAAATGTAGCTCCTTGTATACTATATTCGTCGGGTCTGAGACCTAGTTGACGATGCCTCTCGACGG ] [+] EMBL CD189877 [ TTTGATGCCTTTTTTGTAATAGCATGGCACCGAATATAATCAATAATATGAGTAGTACACAAAAGCATATTCCAAGAGCTACCGCCCAACTAGTTGGTGATAAAACAGCCACTACAAATCGAGTACGAGTAATTGTTCCATTCAGTCCCAAGAATGTTGTATCGCCTGGAAGAACATTGCGAGCAGTACAACTCAGAAGAAGTTCAACGCCTGGAGTAGCGTTTGGTGCTAAATAAAATGTAGCTCCTTGTATACTATATTCGTCGGGTCTGAGACCTAGTTGACGATGCCTCTCGACGGTGGA] consensusID : consensus_10197#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 357 fasta sequence [ATTCTGCTTTAGGGAGAGAGGAAGAGGATAATAACAATACGAATAATGAAGTGGAAAATGTTGGTCAAGGTGCCAAAAAAACATGACGGTATAGTATGTTAATTTGTGTATGCATTTATTTCCATAGAGAATGGGGAAACGAAGATCGAAATGAGACAGTTTGAAAAATAAGTTGATCACAATAATGCTCAACAGCTCCGATAAAAGCAAAGTAGGAATGTAGTATCTAGTATCTGACGGCATAAATAACTCTATAAATACCCACCTGACAAATAAACCATTAGAGAACTAAGAAGACAAAAAGAGAAAGAAACAAAACATCATCCAAATTAAACGAACACACGTGGTTTGTTCTGT] [+] EMBL CD141654 [ATTCTGCTTTAGGGAGAGAGGAAGAGGATAATAACAATACGAATAATGAAGTGGAAAATGTTGGTCAAGGTGCCAAAAAAACATGACGGTATAGTATGTTAATTTGTGTATGCATTTATTTCCATAGAGAATGGGGAAACGAAGATCGAAATGAGACAGTTTGAAAAATAAGTTGATCACAATAATGCTCAACAGCTCCGATAAAAGCAAAGTAGGAATGTAGTATCTAGTATCTGACGGCATAAATAACTCTATAAATACCCACCTGACAAATAAACCATTAGAGAACTAAGAAGACAAAAAGAGAAAGAAACAAAACATCATCCAAATTAAACGAACACACGTGGTTTGTTCTGT] [-] EMBL CD202717 [ aAGGATAATAACAATACGAATAATGAAGTGGAAAATGTTGGTCAAGGTGCCAAAAAAACATGACGGTATAGTATGTTAATTTGTGTATGCATTTATTTCCATAGAGAATGGGGAAACGAAGATCGAAATGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10197#0 TNTAGTATGATTGGTTACAAAAAGACGATAGATATAGAGACCGAACAAACGGAAAAGAGT 60 consensus_10197#1 ------------------------------------------------------------ consensus_10197#0 TGACCGGNTAAAGAATGAAGAAACTCGAAGTAAATATGACTTGGAGGTCGGAAGTGACAG 120 consensus_10197#1 ------------------------------------------------------------ consensus_10197#0 AAAGAGTAAAATGTCGATAACCATGCATACATACATAAACAGACATATTTTGTTAAGAAC 180 consensus_10197#1 ----------------------------------------------ATTCTGCT------ 8 *** ** * consensus_10197#0 TGCAAGAGAGAGAGGAAGAGGATAATAACAATACGAATAATGAAGTGGAAAATGTTGGTC 240 consensus_10197#1 --TTAGGGAGAGAGGAAGAGGATAATAACAATACGAATAATGAAGTGGAAAATGTTGGTC 66 ** ***************************************************** consensus_10197#0 AAGGTGCCAAAAAAACATGACGGTATAGTATGTTAATTTGTGTATGCATTTATTTCCATA 300 consensus_10197#1 AAGGTGCCAAAAAAACATGACGGTATAGTATGTTAATTTGTGTATGCATTTATTTCCATA 126 ************************************************************ consensus_10197#0 GAGAATGGGGAAACGAAGATCGAAATGAGACAGTTTGAAAGATAAGTTGATCACAATAAT 360 consensus_10197#1 GAGAATGGGGAAACGAAGATCGAAATGAGACAGTTTGAAAAATAAGTTGATCACAATAAT 186 **************************************** ******************* consensus_10197#0 GCTCAACAGCTCCGATAAAAGCAAAGTAGGAATGTAGTATCTAGTATCTGACGGCATAAA 420 consensus_10197#1 GCTCAACAGCTCCGATAAAAGCAAAGTAGGAATGTAGTATCTAGTATCTGACGGCATAAA 246 ************************************************************ consensus_10197#0 TAACTCTATAAATACCA--CTGACAAATAAACCATTAGAGAACTAAGAAGACAAAAAGAG 478 consensus_10197#1 TAACTCTATAAATACCCACCTGACAAATAAACCATTAGAGAACTAAGAAGACAAAAAGAG 306 **************** ***************************************** consensus_10197#0 AAAGAAACAAAACATCATCCAAATTAAACGAACACACGTGGTTTGTTCTGTTGCATGGCT 538 consensus_10197#1 AAAGAAACAAAACATCATCCAAATTAAACGAACACACGTGGTTTGTTCTGT--------- 357 *************************************************** consensus_10197#0 AACAACGCTTGTGTAGCTTCATGTTGCTGTTGGAGAACCAACTGAGAAGCGTGCGCTTTT 598 consensus_10197#1 ------------------------------------------------------------ consensus_10197#0 GGTTGCATAAAACCAACAATCTCAGTGTAATGTGATGATTCATCTCTACGCGTTGGATCA 658 consensus_10197#1 ------------------------------------------------------------ consensus_10197#0 GCGAAAGCAGAAGAATAACCGTCACGAGGATGAATAGACGAACGATTATCGTCAAACCCA 718 consensus_10197#1 ------------------------------------------------------------ consensus_10197#0 TCTCCAACATTATCTAGACCTTGTGGGACAGAAGCAACAATTGGTCGTGAGTGTGGAGCT 778 consensus_10197#1 ------------------------------------------------------------ consensus_10197#0 GGTTGTGTACTAGTCCCGAATAGAGTCATTGAAGACGAAGCAACACCATTACCACCACCA 838 consensus_10197#1 ------------------------------------------------------------ consensus_10197#0 AGTGAAGTGCCAATACGCCCTCTCCTTGAGCTGACACTAGCATTGTGACCAGGACGAACA 898 consensus_10197#1 ------------------------------------------------------------ consensus_10197#0 TGATCGAAAGACAATTCCATATATTGTAATTCATTTACATTCGGAACTGTGCTTGGAGAC 958 consensus_10197#1 ------------------------------------------------------------ consensus_10197#0 ATTTCATTCGAAGTCTGAGCATAAACCAAATCATAAGTATAATCAGGAACATCTTTGTAA 1018 consensus_10197#1 ------------------------------------------------------------ consensus_10197#0 ATGTTATTTGGTAGTCCAGCCCCAGTCCCAGATAGTGTGGTAGTAGGGTAAGCACCACTA 1078 consensus_10197#1 ------------------------------------------------------------ consensus_10197#0 ATTCCAGTTACGGGACTGTTCAGTGGATTACCTTGTCTAAGTAAAGCTCCGCCATCTGGT 1138 consensus_10197#1 ------------------------------------------------------------ consensus_10197#0 TGTTTTTTAGCAATCATATCTTTGGAATAATTCTTTGGTTTTTTAGCTCCATTTGATGTG 1198 consensus_10197#1 ------------------------------------------------------------ consensus_10197#0 CTCCTTGAATTCCTGGCCGCTTGACTTTGATGCCTTTTTTGTAATAGCATGGCACCGAAT 1258 consensus_10197#1 ------------------------------------------------------------ consensus_10197#0 ATAATCAATAATATGAGTAGTACACAAAAGCATATTCCAAGAGCTACCGCCCAACTAGTT 1318 consensus_10197#1 ------------------------------------------------------------ consensus_10197#0 GGTGATAAAACAGCCACTACAAATCGAGTACGAGTAATTGTTCCATTCAGTCCCAAGAAT 1378 consensus_10197#1 ------------------------------------------------------------ consensus_10197#0 GTTGTATCGCCTGGAAGAACATTGCGAGCAGTACAACTCAGAAGAAGTTCAACGCCTGGA 1438 consensus_10197#1 ------------------------------------------------------------ consensus_10197#0 GTAGCGTTTGGTGCTAAATAAAATGTAGCTCCTTGTATACTATATTCGTCGGGTCTGAGA 1498 consensus_10197#1 ------------------------------------------------------------ consensus_10197#0 CCTAGTTGACGATGCCTCTCGACGGTGGA 1527 consensus_10197#1 ----------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||