These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10201#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1254 fasta sequence [AAAATCGTCCCATTCATTTAGTATTTGACATAACTTGCTAAGATTAGTCATTAAAAACGATCGAAAACAAGCATGGAAGGAAGAATACATTCAAACCATTTTCTTTATATACACAACTGATGAAAATTGGCATTAAATTAATAAAAATGTTAGCACCAATGAGAATCTTGGAGTACCTGAATAGTGAAAAATATTAAGATTTACTGAGTGAAAATATTTACGGAATTAGATAATTGAGTAAACTTTCATGTTGGACAGCCTATCATTCGTATAGTCGGATCAGTTTCTTTAGAATACGAGTAAGATACAGATTCATGCTGACTATGATACCTGCATGCCAAGTCTTTTGCACATACTTCAATATTTTGACTATTGACATTTGTTAGTTCGTCTGACTGAGTCATATTTGACAATACATTATATAGACACTGATCTGCAACGACTGTAGAAAGATCTGTTTGATTTTGATCGGCGTATTTTGTCTCCAAAGAACATTGAGAAAATTGGTCTATACCCAAATAAGCGAGCACCAAAACTAATAGAATTTTGCTTACTCTCTTAATTTCGGGTGAAGTACGGTGCCTAG-AATACTTCAAAAAAAGTTGGGAAATATGTGACAACATAGAATATACATTGAACTCAGGTTTGTCGCTAAATGAATCACACTTGGTATTCTGACGGAAGACCCCGATCTCAAGACCGAATTGGAGTATTTGTGCTCTAGTTACAAAAAACTCCCAATTAAGAGCGGAAATGAATTTGACTTCAAGTTCATTCAACTCTTTGAGTTCCATATCAAATTCATCTGCCCATTCTGCATTGTACATTCCATGGTCCGTATCATCGTCATGTAAATATTTAGATGCAACTACCATTGATACAGCAAAAAGATCAACTGCTGTAACTTCAGTCAATAAAGAGGAATAAGGATCGGCCACTACAAGTTTCTCAATGAATAATAGAGCAGTGAGAACAGACACTGGAGGCACACTTCTTGAACAGAGATATTCGAGCACCATAAATGTGTCTAATTTACCAAGACGTCTTTTGCTTGCTGAATTGACCATCTTGACAATTCGATCTGAAACGACTGGATTTTCGAAACAGTCCCCTCCCTCATTATTACACAGAACATCAAATATTTCCAAGATAGATGGACTTGGCCTTTTGGCTTCTGATTGACGAAGATCTTGGATGAAATCCATATCTAAGTGCAAAAATTGGAAGTACGGCTCTT-ACCTTCAGACTATTTCG] [+] EMBL CD074005 [AAAATCGTCCCATTCATTTAGTATTTGACATAACTTGCTAAGATTAGTCATTAAAAACGATCGAAAACAAGCATGGAAGGAAGAATACATTCAAACCATTTTCTTTATATACACAACTGATGAAAATTGGCATTAAATTAATAAAAATGTTAGCACCAATGAGAATCTTGGAGTACCTGAATAGTGAAAAATATTAAGATTTACTGAGTGAAAATATTTACGGAATTAGATAATTGAGTAAACTTTCATGTTGGACAGCCTATCATTCGTATAGTCGGATCAGTTTCTTTAGAATACGAGTAAGATACAGATTCATGCTGACTATGATACCTGCATGCCAAGTCTTTTGCACATACTTCAATATTTTGACTATTGACATTTGTTAGTTCGTCTGACTGAGTCATATTTGACAATACATTATATAGACACTGATCTGCAACGACTGTAGAAAGATCTGTTTGATTTTGATCGGCGTATTTTGTCTCCAAAGAACATTGAGAAAATTGGTCTATACCCAAATAAGCGAGCACCAAAACTAATAGAATTTTGCTTACTCTCTTAATTTCGGGTGAAGTACGGTGCCTAG AATACTTCAAAAAAAGTTGGGAAATATGTGACAACATAGAATATACATTGAACTCAGGTTTGTCGCTAAATGAATCACACTTGGTATTCTGACGGAAGACCCCGA ] [+] EMBL CD074380 [ AAAAATACATTCAAACCATTTTCTTTATATACACAACTGATGAAAATTGGCATTAAATTAATAAAAATGTTACCACCAATGAAAATCTTGGAGTACCTGAATAGTGAAAAATATTAAAATTTACTGAGTGAAAATATTTACGGAATTAAATAATTGAGTAAACTTTCATGTTGGACAGCCTATCATTCGTATAGTCGGATCAGTTTCTTTAAAATACGAGTAAAATACAGATTCATGCTGACTATGATACCTGCATGCCAAGTCTTTTGCACATACTTCAATATTTTGACTATTGACATTTGTTAGTTCGTCTGACTGAGTCATATTTGACAATACATTATATAGACACTGATCTGCAACGACTGTAAAAAGATCTGTTTGATTTTGATCGGCGTATTTTGTCTCCAAAGAACATTGAAAAAATTGGTCTATACCCAAATAAGCGAGCACCAAAACTAATAGAATTTTGCTTACTCTCTTAATTTCGGGTGAAGTACGGTGCCTAG AATACTTCAAAAAAAGT ] [-] EMBL CD158908 [ CTATCATTCGTATAGTCGGATCAGTTTCTTTAGAATACGAGTAAGATACAGATTCATGCTGACTATGATACCTGCATGCCAAGTCTTTTGCACATACTTCAATATTTTGACTATTGACATTTGTTAGTTCGTCTGACTGAGTCATATTTGACAATACATTATATAGACACTGATCTGCAACGACTGTAGAAAGATCTGTTTGATTTTGATCGGCGTATTTTGTCTCCAAAGAACATTGAGAAAATTGGTCTATACCCAAATAAGCGAGCACCAAAACTAATAGAATTTTGCTTACTCTCTTAATTTCGGGTGAAGTACGGTGCCTAG AATACTTCAAAAAAAGTTGGGAAATATGTGACAACATAGAATATACATTGAACTCAGGTTTGTCGCTAAATGAATCACACTT ] [+] EMBL CD136607 [ CAGATTCATGCTGACTATGATACCTGCATGCCAAGTCTTTTGCACATACTTCAATATTTTGACTATTGACATTTGTTAGTTCGTCTGACTGAGTCATATTTGACAATACATTATATAGACACTGATCTGCAACGACTGTAGAAAGATCTGTTTGATTTTGATCGGCGTATTTTGTCTCCAAAGAACATTGAGAAAATTGGTCTATACCCAAATAAGCGAGCACCAAAACTAATAGAATTTTGCTTACTCTCTTAATTTCGGGTGAAGTACGGTGCCTAGAAATACTTC AAAAAGTTGNGAAATATGTGACAACATAGAAT ] [-] EMBL CD077854 [ TCTGACTGAGTCATATTTGACAATACATTATATAGACTCTGATCTGCAGCGACTGTAGAAAGATCTGTTTGATTTTGATCGGCGTATTTTGTCTCCAAAGAACATTGAGAAAATTGGTCTATACCCAAATAAGCGAGCTCCAAAACTAATAGAATTTTGCTTACTCTCTTAATTTCGGGTGAAGTACGGTGCCTAG AATACTTCAAAAAAAGTTGGGAAATATGTGACAACATAGAATAT CATTGAACTCAGGTTTGTCGCTAAATGAATCTCACT ] [-] EMBL CD136520 [ TATTTGACAATACATTATATAGACACTGATCTGCAACGACTGTAGAAAGATCTGTTTGATTTTGATCGGCGTATTTTGTCTCCAAAGAACATTGAGAAAATTGGTCTATACCCAAATAAGCGAGCACCAAAACTAATAGAATTTTGCTTGCTCTCTTAATTTCGGGTGAAGTACGGTGCCTGG AATACTTCAAAAAAAGTTGGGAAATATGTGACAACATAGAATATACATTGAACTCAGGTTTGTCGCTAAATGAATCACACTTGGTATTCTGAC ] [-] EMBL CD079747 [ TCGGGTGAAGTACGGTGCNTAG AATACTTCAAAAAAAGTTGGGAAATATGTGACAACATAGAATATACATTGAACTCAGGTTTGTCGCTAAATGAATCACACTTGGTATTCTGACGGAAGACCCCGATCTCAAGACCGAATTGGAGTATTTGTGCTCTAGTTACAAAAAACTCCCAATTAAGAGCGGAAATGAATTTGACTTCAAGTTCATTCAACTCTTTGAGTTCCATATCAAATTCATCTGCCCATTCTGCATTGTACATTCCATGGTCCGTATCATCGTCATGTAAATATTTAGATGCAACTACCATTGATACAGCAAAAAGATCAACTGCTGTAACTTCAGTCAATAAAGAGGAATAAGGATCGGCCACTACAAGTTTCTCAATGAATAATAGAGCAGTGAGAACAGACACTGGAGGCACACTTCTTGAACAGAGATATTCGAGCACCATAAATGTGTCTAATTTACCAAGACGTCTTTTGCTTGCTGAATTGACCATCTTGACAATTCGATCTGAAACGACTGGATTTTCGAAACAGTCCCCTCCCTCATTATTACACAGAACATCAAATATTTCCAAGATAGATGGACTTGGCCTTTTGGCTTCTGATTGACGAAGATCTTGGATGAAATCCATATCTAAGTGCAAAAATTGGAAGTACGGCTCTT ACCTTC ] [-] EMBL SM3801 [ TTGCA TCAG TGTCCGTAAATGAATCACACTTGGTATTCTGACGGAAGACCCCGATCTCAAGACCGAATTGGAGTATTTGTGCTCTAGTTACAAAAAACTCACAATTAAGAGCGGAAATGAATTTGACTTCA ] [-] EMBL CD080469 [ CAGGTNTGTCGCTAAATGAATCACACTTGGTATTCTGACGGAAGACNCCGATCTCAAGACCGAATTGGAGTATNTGTGCTCTAGTTACAAAAAACTCCCAATTAAGAGCGGAAATGAATTTGACTTCAAGTTCATTCAACTCTTTGAGTTCCATATCAAATTCATCTGCCCATTCTGCATTGTACATTCCATGGTCCGTATCATCGTCATGTAAATATTTAGATGCAACTACCATTGATACAGCAAAAAGATCAACTGCTGTAACTTCAGTCAATAAAGAGGAATAAGGATCGGCCACTACAAGTTTCTCAATGAATAATAGAGCAGTGAGAACAGACACTGGAGGCACACTTCTTGAACAGAGATATTCGAGCACCATAAATGTGTCTAATTTACCAAGACGTCTTTTGCTTGCTGAATTGACCATCTTGACAATTCGATCTGAAACGACTGGATTTTCGAAACAGTCCCCTCCCTCATTATTACACAGAACATCAAATATTTCCAAGATAGATGGACTTGGCCTTTTGGCTTCTGATTGACGAAGATCTTGGATGAAATCCATATCTAAGTGCAAAAATTGGAAGTACGGCTCTTGACCTTCAGACTATTTCG] [-] EMBL CD147620 [ CTCAATGAATAATAGAGCAGTGAGAACAGACACTGGAGGCACACTTCTTGAACAGAGATATTCGAGCACCATAAATGTGTCTAATTTACCAAGACGTCTTTTGCTTGCTGAATTGACCATCTTGACAATTCGATCTGAAACGACTGGATTTTCGAAACAGTCCCCTCCCTCATTATTACACAGAACATCAAATATTTCCAAGAT ] consensusID : consensus_10201#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 463 fasta sequence [ATACATTGAACTCAGGTTTGTCGCTAAATGAATCACACTTGGTATTCTGACGGAAGACNCCGATCTCAAGACCGAATTGGAGTATTTGTGCTCTAGTTACAAAAAACTCNCAATTAAGAGCGGAAATGAATTTGACTTCAAGTTCATTCAACTCTTTGAGTTCCATATCAAATTCATCTGCCCATTCTGCATTGTACATTCCATGGTCCGTATCATCGTCATGTAAATATTTAGATGCAACTACCATTGATACAGCAAAAAGATCAACTGCTGTAACTTCAGTCAATAAAGAGGAATAAGGATCGGCCACTACAAGTTTCTCAATGAATAATAGAGCAGTGAGAACAGACACTGGAGGCACACTTCTTGAACTACACAAAAGATGTGTCAGTTAGAAAGGAATCGGAATACCAGAGATATTCGAGCCCCATAAATGTGTCTAATTTACCAAGACGTCTTTTGC] [-] EMBL CD188665 [ATACATTGAACTCAGGTTTGTCGCTAAATGAATCACACTTGGTATTCTGACGGAAGACNCCGATCTCAAGACCGAATTGGAGTATTTGTGCTCTAGTTACAAAAAACTCNCAATTAAGAGCGGAAATGAATTTGACTTCAAGTTCATTCAACTCTTTGAGTTCCATATCAAATTCATCTGCCCATTCTGCATTGTACATTCCATGGTCCGTATCATCGTCATGTAAATATTTAGATGCAACTACCATTGATACAGCAAAAAGATCAACTGCTGTAACTTCAGTCAATAAAGAGGAATAAGGATCGGCCACTACAAGTTTCTCAATGAATAATAGAGCAGTGAGAACAGACACTGGAGGCACACTTCTTGAACTACACAAAAGATGTGTCAGTTAGAAAGGAATCGGAAT ] [-] EMBL CD139748 [ AACTACACAAAAGATGTGTCAGTTAGAAAGGAATCGGAATACCAGAGATATTCGAGCCCCATAAATGTGTCTAATTTACCAAGACGTCTTTTGC] consensusID : consensus_10201#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 224 fasta sequence [TTAGTATAAAATGCTAAATCATCAAGAGTATCTATCCGGTTGGAGGAGATAGGTGTCTCGGTGAGTAATTTAAACAAGTCAATATTAAGTGAATTATCAACAACTTCTGGGTCTCCAAATGAATAATAGAGCAGTGAGAACAGACACTGGAGGCACACTTCTTGAACAGAGATATTCGAGCACCATAAATGTGTCTAATTTACCAAGACGTCTTTTGCTTGCTG] [+] EMBL CD059984 [TTAGTATAAAATGCTAAATCATCAAGAGTATCTATCCGGTTGGAGGAGATAGGTGTCTCGGTGAGTAATTTAAACAAGTCAATATTAAGTGAATTATCAACAACTTCTGGGTCTCCAAATGAATAATAGAGCAGTGAGAACAGACACTGGAGGCACACTTCTTGAACAGAGATATTCGAGCACCATAAATGTGTCTAATTTACCAAGACGTCTTTTGCTTGCTG] [+] EMBL CD059965 [TTAGTAGAAAATGCTAAATCATCAAGAGTATCTATCCGGTTGGAGGAGATAGGTGTCTCGGTGAGTAATTTAAACAAGTCAATATTAAGTGAATTATCAACAACTTCTGGGTCTCCAAATGAATAATAGAGCAGTGAGAACAGACACTGGAGGCACACTTCTTGAACAGAGATATTCGAGCACCATAAATGTGTCTAATTTACCAAGACGTCTTTTGCTTGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10201#0 AAAATCGTCCCATTCATTTAGTATTTGACATAACTTGCTAAGATTAGTCATTAAAAACGA 60 consensus_10201#1 ------------------------------------------------------------ consensus_10201#2 ------------------------------------------------------------ consensus_10201#0 TCGAAAACAAGCATGGAAGGAAGAATACATTCAAACCATTTTCTTTATATACACAACTGA 120 consensus_10201#1 ------------------------------------------------------------ consensus_10201#2 ------------------------------------------------------------ consensus_10201#0 TGAAAATTGGCATTAAATTAATAAAAATGTTAGCACCAATGAGAATCTTGGAGTACCTGA 180 consensus_10201#1 ------------------------------------------------------------ consensus_10201#2 ------------------------------------------------------------ consensus_10201#0 ATAGTGAAAAATATTAAGATTTACTGAGTGAAAATATTTACGGAATTAGATAATTGAGTA 240 consensus_10201#1 ------------------------------------------------------------ consensus_10201#2 ------------------------------------------------------------ consensus_10201#0 AACTTTCATGTTGGACAGCCTATCATTCGTATAGTCGGATCAGTTTCTTTAGAATACGAG 300 consensus_10201#1 ------------------------------------------------------------ consensus_10201#2 ------------------------------------------------------------ consensus_10201#0 TAAGATACAGATTCATGCTGACTATGATACCTGCATGCCAAGTCTTTTGCACATACTTCA 360 consensus_10201#1 ------------------------------------------------------------ consensus_10201#2 ------------------------------------------------------------ consensus_10201#0 ATATTTTGACTATTGACATTTGTTAGTTCGTCTGACTGAGTCATATTTGACAATACATTA 420 consensus_10201#1 ------------------------------------------------------------ consensus_10201#2 ------------------------------------------------------------ consensus_10201#0 TATAGACACTGATCTGCAACGACTGTAGAAAGATCTGTTTGATTTTGATCGGCGTATTTT 480 consensus_10201#1 ------------------------------------------------------------ consensus_10201#2 ------------------------------------------------------------ consensus_10201#0 GTCTCCAAAGAACATTGAGAAAATTGGTCTATACCCAAATAAGCGAGCACCAAAACTAAT 540 consensus_10201#1 ------------------------------------------------------------ consensus_10201#2 ------------------------------------------------------------ consensus_10201#0 AGAATTTTGCTTACTCTCTTAATTTCGGGTGAAGTACGGTGCCTAGAATACTTCAAAAAA 600 consensus_10201#1 ------------------------------------------------------------ consensus_10201#2 ------------------------------------------------------------ consensus_10201#0 AGTTGGGAAATATGTGACAACATAGAATATACATTGAACTCAGGTTTGTCGCTAAATGAA 660 consensus_10201#1 ----------------------------ATACATTGAACTCAGGTTTGTCGCTAAATGAA 32 consensus_10201#2 ------------------------------------------------------------ consensus_10201#0 TCACACTTGGTATTCTGACGGAAGACCCCGATCTCAAGACCGAATTGGAGTATTTGTGCT 720 consensus_10201#1 TCACACTTGGTATTCTGACGGAAGACNCCGATCTCAAGACCGAATTGGAGTATTTGTGCT 92 consensus_10201#2 ------------------------------------------------------------ consensus_10201#0 CTAGTTACAAAAAACTCCCAATTAAGAGCGGAAATGAATTTGACTTCAAGTTCATTCAAC 780 consensus_10201#1 CTAGTTACAAAAAACTCNCAATTAAGAGCGGAAATGAATTTGACTTCAAGTTCATTCAAC 152 consensus_10201#2 ------------------------------------------------------------ consensus_10201#0 TCTTTGAGTTCCATATCAAATTCATCTGCCCATTCTGCATTGTACATTCCATGGTCCGTA 840 consensus_10201#1 TCTTTGAGTTCCATATCAAATTCATCTGCCCATTCTGCATTGTACATTCCATGGTCCGTA 212 consensus_10201#2 ---------------------------------------------------------TTA 3 ** consensus_10201#0 TCATCGTCATGTAAATATTTAGATGCAACTACCATTGATACAGCAAAAAGATCAACTGCT 900 consensus_10201#1 TCATCGTCATGTAAATATTTAGATGCAACTACCATTGATACAGCAAAAAGATCAACTGCT 272 consensus_10201#2 GTATAAAATGCTAAATCATCAAGAGTATCTATC-CGGTTGGAGGAGATAGGTGTCTCGGT 62 ** ***** * * * * *** * * * ** * * ** * * * consensus_10201#0 G--TAACTTCAGTCAATAAAGAGGAAT--AAGGATCGGCCACTAC-AAGTTTCTCAATGA 955 consensus_10201#1 G--TAACTTCAGTCAATAAAGAGGAAT--AAGGATCGGCCACTAC-AAGTTTCTCAATGA 327 consensus_10201#2 GAGTAATTTAAACAAGTCAATATTAAGTGAATTATCAACAACTTCTGGGTCTCCAAATGA 122 * *** ** * * * ** * ** ** *** * *** * ** ** ***** consensus_10201#0 ATAATAGAGCAGTGAGAACAGACACTGGAGGCACACTTCTTGAACAG----AGATATTCG 1011 consensus_10201#1 ATAATAGAGCAGTGAGAACAGACACTGGAGGCACACTTCTTGAACTACACAAAAGATGTG 387 consensus_10201#2 ATAATAGAGCAGTGAGAACAGACACTGGAGGCACACTTCTTGAACAG----AGATATTCG 178 ********************************************* * * ** * consensus_10201#0 AGCACCATAAATGTGTCTAATTTACCAAGACGTCTTTTGCTTGCTGAATTGACCATCTTG 1071 consensus_10201#1 TCAGTTAGAAAGGAATCGGAATACCAGAGATATTCGAGCCCCATAAATGTGTCTAATTTA 447 consensus_10201#2 AGCACCATAAATGTGTCTAATTTACCAAGACGTCTTTTGCTTGCTG-------------- 224 * *** * ** * * * *** * * consensus_10201#0 ACAATTCGATCTGAAACGACTGGATTTTCGAAACAGTCCCCTCCCTCATTATTACACAGA 1131 consensus_10201#1 CCAAGACG-TCTTTTGC------------------------------------------- 463 consensus_10201#2 ------------------------------------------------------------ consensus_10201#0 ACATCAAATATTTCCAAGATAGATGGACTTGGCCTTTTGGCTTCTGATTGACGAAGATCT 1191 consensus_10201#1 ------------------------------------------------------------ consensus_10201#2 ------------------------------------------------------------ consensus_10201#0 TGGATGAAATCCATATCTAAGTGCAAAAATTGGAAGTACGGCTCTTACCTTCAGACTATT 1251 consensus_10201#1 ------------------------------------------------------------ consensus_10201#2 ------------------------------------------------------------ consensus_10201#0 TCG 1254 consensus_10201#1 --- consensus_10201#2 --- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||