These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 886 fasta sequence [GAGGACGAATGACTTGAGTG-AATAGCTGATAAACGATCGTGAGACCTTTTCAACCCAAAAACACTAGTGAATGGATCTTTTACACTAACTAAATCTCCCTGCACTTCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTTGATATTTTATGAATAGGGTCATGTATATGGTGAAAGAATGGAGCTGATGGATTCGCTGTCAGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTACAGTGATGTGTATGATGGTGACAGGTTAATTCTATCAATGGACAATGTATACATGTTCCATTAGTCATCGTAGAGAATTCATGATGATTACTTAGTAAAGCATTACAACCACTACTATTAATTGTAGTAGGGACATTTGATGAAGAAGAGCATAATTCACAACTGGATGATAACACTGATGAGGTTCCATGTTCAAGATTACGTAACTGTGGTGGTTGGTAAACATTTGAAGGTTTTGCTCGTAATATTGGAGGATTTTTCGAGGATAAACCAAGTGGTGCTTCATTATCATCATTATCATTGTTTGTGGTAGTACTAGTAGTAGTATTAGCAACATTTTTGTAACTGGTTGTGTCGACGCCACCACTGGAGTAGTTATTCCACGACTTTTTACGTCCTAATGAATGAT] [-] EMBL CD120509 [GAGGACGAATGAC TGAGTG AATAGCTG TAAACGATCGTGAGA CTTTTCAACCCAAAAACGCTAGTGAATGGACCTTTTACACTANCTAAATCTCCCTGCACTTCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTGCTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTTGATATTTTATGAATAGGGTCATGCATATGGTGAAAGAATGGAGCTGATGGATTCGCTGTCAGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTAC ] [+] EMBL CD120216 [ GGACGAATGACTTGAGTG AATAGCTGATAAACGATCGTGAGACCTTTTCAACCCAAAAACACTAGTGAATGGATCTTTTACACTAACTAAATCTCCCTGCACTTCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTG ] [+] EMBL CD120110 [ GGACGAATGACTTGAGTG AATACCTGATAAACGATCGTGAGACCTTTTCAACCCAAAAACACTAGTGAATGGATCTTTTACACTAACTAAATCTCCCTGCTCTTCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATGGTGGACCAACTATTGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTGGAAAAAAGTGTACTG ] [+] EMBL CD120108 [ GGACGAATGACTTGAGTG AATAGCTGATAAACGATCGAGAGACCTTTTCAACCCAAAAACACTAGTGAATGGATCTTTTACACTAACTAAATCTCCCTGCACTTCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGCTCTTCTCGTTTAATC ] [+] EMBL CD120357 [ GGACGAATGACTTGAGTG AATAGCTGATAAACGATCGTGAGACCTTTTCAACCCAAAAACACTAGTGAATGGATCTTTTACACTAACTAAATCTCCCTGCACTTCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTTGATATTTTATGAATAGGGTCATGTATATGGTGAAAGAATGGAGCTGATGGATTCGCTGTCAGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTA ] [+] EMBL CD120516 [ GGACGAATGACTTGAGTG AATAGCTGATAAACGATCGTGAGACCTTTTCAACCCAAAAACACTAGTGAATGGATCTTTTACACTAACTAAATCTCCCTGCACTTCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGNTGATATTTTATGAATAGGGTCATG ] [+] EMBL CD120066 [ GGACGAATGACTTGAGTG AATAGCTGATAAACGATCGTGAGACCTTTTCAACCCAAAAACACTAGTGAATGGATCTTTTACACTAACTAAATCTCCCTGCACTTCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTTGATATTTTATGAA ] [+] EMBL CD120155 [ GGACGAATGACTTGAGTG AATAGCTGATAAACGATCGTGAGACCTTTTCAACCCAAAAACACTAGTGAGTGGATCTTTTACACTAACTAAATCTCCCTGCACTTCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATNGTAGTAGTTTGGTAGTAGTATAGATGG ] [+] EMBL CD116842 [ GACGAATGACTTGAGTG AATAGCTGATAGACGATCGCGAGACCTTTTCAACCCAAAAACACTAGTGAATGGATCTTTTACACTAACTAAATCTCCCTGCACTTCGAAAACATGTGGATGTTTCAAAAGAAAACATCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACCGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTTGATATTTTATGAATAGGGTCATGTATATGGTGAAAGAATGGAGCTGATGGATTCGCTGTCAGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTACAGTGATGTGTATGATGGTGACAGGTTAATTCTATCAATGGACAATGTATACATGTTCCATTAGTCATCGTAGAGA ] [-] EMBL CD120325 [ GACGAATGACTTGAGTG AATAGCTGATAAACGATCGTGAGACCTTTTCAACCCAAAAACACTAGCGAATGGATCTTTTACACTAACTAAATCTCCCTGCACTTCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTTGATATTTTATGAATAGGGTCATGTATATGGTGAAAGAATGGAGCTGATGGATTCGCTGTCAGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTAC ] [-] EMBL CD120361 [ GACGAATGAC TGAGTGAAATAGCTGATAAACGATCGTGAGACCTTTTCAACCCAAAAACACTAGTGAATGGATCTTTTACACTAACTAAATCTCCCTGCACTTCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTTGATATTTTATGAATAGGGTCATGTATATGGTGAAAGAATGGAGCTGATGGATTCGCTGTCAGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTAC ] [-] EMBL CD091001 [ GAAAGAATGGAGCTGATGGATTCGCTGTCAGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTACAGTGATGTGTATGATGGTGACAGGTTAATTCTATCAATGGACAATGTATACATGTTCCATTAGTCATCGTAGAGAATTCATGATGATTACTTAGTAAAGCATTACAACCACTACTATTAATTGTAGTAGGGACATTTGATGAAGAAGAGCATAATTCACAACTGGATGATAACACTGATGAGGTTCCATGTTCAAGATTACGTAACTGTGGTGGTTGGTAAACATTTGAAGGTTTTGCTCGTAATATTGGAGGATTTTTCGAGGATAAACCAAGTGGTGCTTCATTATCATCATTATCATTGTTTGTGGTAGTACTAGTAGTAGTATTAGCAACATTTTTGTAACTGGTTGTGTCGACGCCACCACTGGAGTAGTTATTCCACGACTTTTTACGTCCTAATGAATGAT] consensusID : consensus_10204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 410 fasta sequence [TCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTTGATATTTTATGAATAGGGTCATGTATATGGTGAAAGAATGGAGCTGATGGATTCGCTGTCAGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTACAGTGATGTGTATGAAGGCTACAGTGGAATCGATTCCC] [-] EMBL CD134148 [TCGAAAACATGTGGATGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTTGATATTTTATGAATAGGGTCATGTATATGGTGAAAGAATGGAGCTGATGGATTCGCTGTCAGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTACAGTGATGTGTATGAAGGCTACAGTGGAATCGATTCCC] [-] EMBL CD120300 [ TTCCAATTGTGGACCAACTATAGCACGAACTTCTGGACTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTAATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACTGGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTTGATATTTTATGAATAGGGTCATGTATATGGTGAAAGAATGGAGCTGATGGATTCGCTGTCAGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10204#0 GAGGACGAATGACTTGAGTGAATAGCTGATAAACGATCGTGAGACCTTTTCAACCCAAAA 60 consensus_10204#1 ------------------------------------------------------------ consensus_10204#0 ACACTAGTGAATGGATCTTTTACACTAACTAAATCTCCCTGCACTTCGAAAACATGTGGA 120 consensus_10204#1 ---------------------------------------------TCGAAAACATGTGGA 15 *************** consensus_10204#0 TGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGA 180 consensus_10204#1 TGTTTCAAAAGAAAACGTCGAAATTCCAATTGTGGACCAACTATAGCACGAACTTCTGGA 75 ************************************************************ consensus_10204#0 CTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTA 240 consensus_10204#1 CTAGCCTGCGATAAATGTCCTGCTAAACTTTTAATTGGTATCCAACGTTCTTCTCGTTTA 135 ************************************************************ consensus_10204#0 ATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACT 300 consensus_10204#1 ATCAATTTCTGTTGAAAAAAGTGTACTGCTTCACTTTCAAGTATGAATTTCTCCATTACT 195 ************************************************************ consensus_10204#0 GGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTT 360 consensus_10204#1 GGTAAATTGTAGTAGTTTGGTAGTAGTATAGATGGAGATCGTAATGTATTTTGTGCTGTT 255 ************************************************************ consensus_10204#0 GATATTTTATGAATAGGGTCATGTATATGGTGAAAGAATGGAGCTGATGGATTCGCTGTC 420 consensus_10204#1 GATATTTTATGAATAGGGTCATGTATATGGTGAAAGAATGGAGCTGATGGATTCGCTGTC 315 ************************************************************ consensus_10204#0 AGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTACAG 480 consensus_10204#1 AGTGGAGAGGTTGTACAATGACAATGCGCTGAAGATGAATGATGATGTGCAGTTGTACAG 375 ************************************************************ consensus_10204#0 TGATGTGTATGATGGTGACAGGTTAATTCTATCAATGGACAATGTATACATGTTCCATTA 540 consensus_10204#1 TGATGTGTATGAAGGCTACAG-TGGAATCGATTCCC------------------------ 410 ************ ** **** * * ** ** consensus_10204#0 GTCATCGTAGAGAATTCATGATGATTACTTAGTAAAGCATTACAACCACTACTATTAATT 600 consensus_10204#1 ------------------------------------------------------------ consensus_10204#0 GTAGTAGGGACATTTGATGAAGAAGAGCATAATTCACAACTGGATGATAACACTGATGAG 660 consensus_10204#1 ------------------------------------------------------------ consensus_10204#0 GTTCCATGTTCAAGATTACGTAACTGTGGTGGTTGGTAAACATTTGAAGGTTTTGCTCGT 720 consensus_10204#1 ------------------------------------------------------------ consensus_10204#0 AATATTGGAGGATTTTTCGAGGATAAACCAAGTGGTGCTTCATTATCATCATTATCATTG 780 consensus_10204#1 ------------------------------------------------------------ consensus_10204#0 TTTGTGGTAGTACTAGTAGTAGTATTAGCAACATTTTTGTAACTGGTTGTGTCGACGCCA 840 consensus_10204#1 ------------------------------------------------------------ consensus_10204#0 CCACTGGAGTAGTTATTCCACGACTTTTTACGTCCTAATGAATGAT 886 consensus_10204#1 ---------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||