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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1106 fasta sequence
[AAGGTTTCGGGAGGGGAAATAAACGAAGGAAGTTACATCTAGGGAGTTAACGTCCACATCACCGTTTGTTTCTCCTTATCAGGAGCAAGCCATATAAAGTCTCTGTTCTTATTCAAGCTTCAAATTATGTTTGGAAACCGTACAGATAAGTTACAGGACTCACTAATACAACTCAGGATTGCAGCGAAGCAAGTAATGCGCTTTTCTGAAAAAGCAGCAAGGGAATCTGAAGTGCAAAAGCAAAAACTAAAAAAGGCTTTAACATCCGGAAATATTGAGTGTGGCAGGATTTATGCTGAAAATGCTATTAGGAAACAGAAAGAGTCAACTAATTACCTCCGGATGGCATCTCGCTTTGATGCTGTCCAGTCACGCGTACAAACTGCTCTCACAATGAATCAGGTGGTGAAAAATATTGGTGCTGTCTCTAATGAACTTGAAAAGGCGATGCGCACCATGGATTTGGAGAAACT-GAAAAGGTCATGAGTAAATTCGAGTCTCAGTTTGAAGATCTCGATATTCGTTCTTTAACTATGGAAAATTCCATGAGGAATATCTTTACTCTTTCAGCTCCTGAGGATGAGATTAATTCACTGATAAAGCAGGTGGCAGAAGAAAACAGTCTTGAAGTTTCACACGCTATTGCAGATG-CTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAGGGATGCTGAAGATGACGCTCTTACAAGAAGGCTTGCTGCACTCCGTCAATAAAACCTGTCAACCTCAGTGTTTTGTTGCTTCATCTGGTCAGTAATAATTTATTCTGATTATTTTTCATCGTTAACAGGTTACTCACAAGTTCATCTTTGTATTTTGCTCTTTCTAAACCTTAATTTCAAGGATATTTTTTCTTCGAAATTAGTTGTACAAACCCGAATTGACCTATTTTTGTTTCATTTCGCAAAACGTTTATAACATGATGCACCGTCAGATTTCTTGTATACCTTTGAAGAAATTATATATTTTGCATTGCTCGCTTATCACTGAAATGATTTTGT-G-AAAAAATCGACTAT-TGTCTAACACATTTACTAGTATTATTTATTAATTGTTACCATCATTTAATTTTAC]
[+] EMBL CD164941 [AAGGTTTCGGGAGGGGAAATAAACGAAGGAAGTTACATCTAGGGAGTTAACGTCCACATCACCGTTTGTTTCTCCTTATCAGGAGCAAGCCATATAAAGTCTCTGTTCTTATTCAAGCTTCAAATTATGTTTGGAAACCGTACAGATAAGTTACAGGACTCACTAATACAACTCAGGATTGCAGCGAAGCAAGTAATGCGCTTTTCTGAGAAAGCAGCAAGGGAATCTGAAGTGCAAAAGCAAAAACTAAAAAAGGCTTTAACATCCGGAAATATTGAGTGTGGCAGGATTTATGCTGAAAATGCTATTAGGAAACAGAAAGAGTCAACTAATTACCTCCGGATGGCATCTCGCTTTGATGCTGTCCAGTCACGCGTACAAACTGCTCTCACAATGAATCAGGTGGT ]
[+] EMBL CD084237 [ GGAAAATAAACGAAGGAAGTTACATCTAGGGAGTTAACGTCCACATCACCGTTTGTTTCTCCTTATCAGGAGCAAGCCATAT AAGTCTCTGTTCTTATTCAAGCTTCAAATTATGTTTGGAAACCGTACAGATAAGTTACAGGACTCACTAATACAACTCAGGATTGCAGCGAAGCAAGTAATGCGCTTTTCTGAAAAAGCAGCAAGGGAATCTGAAGTGCAAAAGCAAAAACTAAAAAAGGCTTTAACATCCGGAAATATTGAGTGTGGCAGGATTTATGCTGAAAATGCTATTAGGAAACAGAAAGAGTCAACTAATTACCTCCGGATGGCATCTCGCTTTGATGCTGTCCAGTCACGCGTACAAACTGCTCTCACAATGAATCAGGTGGTGAAAAATATTGGTGCTGTCTCTAATGAACTTGAAAAGGCGATGCGCACCATGGATTTGGAGAAACT GAAAAGGTCATGAGTAAATTCGAGTCTCAGTTTGAAGATCTCGATATTCGTTCTTT ]
[-] EMBL CD190026 [ AAACGAAGGAAGTTACATCTAGGGAGTTAACGTCCACATCACCGTTTGTTTCTCCTTATCAGGAGCAAGCCATATAAAGTCTCTGTTCTTATTCAAGCTTCAAATTATGTTTGGAAACCGTACAGATAAGTTACAGGACTCACTAATACAACTCAGGATTGCAGCGAAGCAAGTAATGCGCTTTTCTGAAAAAGCAGCAAGGGAATCTGAAGTGCAAAAGCAAAAACTAAAAAAGGCTTTAACATCCGGAAATAT ]
[+] EMBL CD080150 [ CACATCACCGTTTGTTTCTCCTTATCAGGAGCAAGCCATATAAAGTCTCTGTTCTTATTCAAGCTTCAAATTATGTTTGGAAACCGTACAGATAAGTTACAGGACTCACTAATACAACTCAGGATTGCAGCGAAGCAAGTAATGCGCTTTTCTGAAAAAGCAGCAAGGGAATCTGAAGTGCAAAAGCAAAAACTAAAAAAGGCTTTAACATCCGGAAATATTGAGTGTGGCAGGATTTATGCTGAAAATGCTATTAGGAAACAGAAAGAGTCAACTAATTACCTCCGGATGGCATCTCGCTTTGATGCTGTCCAGTCACGCGTACAAACTGCTCTCACAATGAATCAGGTGGTGAAAAATATTGGTGCTGTCTCTAATGAACTTGAAAAGGCGATGCGCACCATGGATTTGGAGAAACTCGAAAAGGTCATGAGTAAATTCGAGTCTCAGTTTGAAGATCTCGATATTCGTTCTTTAACTATGGAAAATTCCATGAGGAATATCTTTACTCTTTCAGCTCCTGAGGATGAGATTAATTCACTGATAAAGCAGGTGGCAGAAGAAAACAGTCTTGAAGTTTCACACGCTATTGCAGATGCCTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAn ]
[+] EMBL BF936364 [ CACATCACCGACTGTTTCTCCTTATCATGAGCAAGCCATATAAAGTCTCTGTTCTTATTCAAGCTTCAAATTATGTTTGGAAACCGTACAGATAAGTTACAGGACTCACTAATACAACTCAGGATTGCAGCGAAGCAAGTAATGCGCTTTTCTGAAAAAGCAGCAAGGGAATCTGAA ]
[+] EMBL CD185392 [ c GAAAAGGTCATGAGTAAATTCGAGTCTCAGTTTGAAGATCTCGATATTCGTTCTTTAACTATGGAAAATTCCATGAGGAATATCTTTACTCTTTCAGCTCCTGAGGATGAGATTAATTCACTGATAAAGCAGGTGGCAGAAGAAAACAGTCTTGAAGTTTCACACGCTATTGCAGATG CTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAGGGATGCTGAAGATGACGCTCTTACAAGAAGGCTTGCTGCACTCCGTCAATAAAACCTGTCAACCTCAGTGTTTTGTTGCTTCATCTGGTCAGTAATAATTTATTCTGATTATTTTTCATCGTTAACAGGTTACTCACAAGTTCATCTTTGTATTTTGCTCTTTCTAAACCTTAATTTCAAGGATATTTTTTCTTCGAAATTAGTTGTACAAACCCGAATTGACCTATTTTTGTTTCATTTCGC AACGTTTATAACATGATGCACC ]
[+] EMBL CD185373 [ c GAAAAGGTCATGAGTAAATTCGAGTCTCAGTTTGAAGATCTCGATATTCGTTCTTTAACTATGGAAAATTCCATGAGGAATATCTTTACTCTTTCAGCTCCTGAGGATGAGATTAATTCACTGATAAAGCAGGTGGCAGAAGAAAACAGTCTTGAAGTTTCACACGCTATTGCAGATG CTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAGGGATGCTGAAGATGACGCTCTTACAAGAAGGCTTGCTGCACTCCGTCAATAAAACCTGTCAACCTCAGTGTTTTGTTGCTTCATCTGGTCAGTAATAATTTATTCTGATTATTTTTCATCGTTAACAGGTTACTCACAAGTTCATCTTTGTATTTTGCTCTTTCTAAACCTTAATTTCAAGGATATTTTTTCTTCGAAATTAGTTGTACAAACCCGAATTGACCTATTTTTGTTTCATTTCGCAAAACGTTTATAACATGATGCACCGTCAGATTTCTTGTATACCTTTGAAGAAATTATATATTTTGCATTGCTCGCTTATCACTGAAATGATTTTGT G AAAAAATCGACTAT TGTCTAACACATTTACTAGTATTATNNATTAATNGTTACCATCATNNAAATTTA ]
[-] EMBL CD133815 [ ATATCTTTACTCTTTCAGCTCCTGAGGATGAGATTAATTCACTGATAAAGCAGGTGGCAGAAGANAACAGTCTTGAAGTTTCACACGCTATTGCAGATG CTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAGGGATGCTGAAGATGACGCTCTTACAAGAAGGCTTGCTGCACTCCGTCAATAAAACCTGTCAACCTCAGTGTTTTGTTGCTTCATCTGGTCAGTAATAATTTATTCTGATTATTTTTCATCGTTAACAGGTTACTCACAAGTTCATCTTTGTATTTTGCTCTTTCTAAACCTTAATTTCAAGGATATTTTTTCTTCGAAATCAGTTGTACAAACCCGAATTGACCTATTTTTGTTTCATTTCGCAAAACGTTTATAACATGATGCACCGTCAGATTTCTTGTATACCTTTGAAGAAATTATATATTTTGCATTGTTCGCTTATCACTGAAATGATTTTGT GAAAAAAATCGACTATATGTCTAACACATTTACTAGTATTATTTATTAATTGTTACAATCATTTAATTTTAC]
[-] EMBL CD076963 [ TCACACGCTATTGCAGATG CTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAGGGATGCTGAAGATGACGCTCTTACAAGAAGGCTTGCTGCACTCCGTCAATAAAACCTGTCAACCTCAGTGTTTTGTTGCTTCATCTGGTCAGTAATAATTTATTCTGATTATTTTTCATCGTTAACAGGTTACTCACAAGTTCATCTTTGTATTTTGCTCTTTCTAAACCTTAATTTCAAGG GGGGGGTTCTTCAAAATTANTTGTACAAACCCNAATTNACCTATTTTTGTTTCATTTCCCAAAACGTTTATAACATAATGCACCTTCAAATTTCTTGTATACCTTTAAAAAAATTATATATTTTCCATTGCTCCCTTATCACTNAAATAATTTTNTAA AAAAAATCNACTATATTTCTAACACATTTACTANTATTATTTATTAATTGTTACCAGCATTTTAT ]
[-] EMBL CD182998 [ TGCAGATG CTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAGGGATGCTGAAGATGACGCTCTTACAAGAAGGCTTGCTGCACTCCGTCAATAAAACCTGTCAACCTCAGTGTTTTGTTGCTTCATCTGGTCAGTAATAAATTATTCTGAATATTTTTCATCGGTAACAGGGTACTCACAAGGTCATCTTTGTATTTTGCTCTTTCTAAACCCTAATTTCAAGGATATTTTTTCTTCGAAAT ]
[-] EMBL CD183134 [ TGCAGATG CTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAGGGATGCTGAAGATGACGCTCTTTCAAGAAGGCTTGCTGCACTCCGTCAATAAAACCTGTCAACCTCAGTGTTTTGTTGCTTCATCTGGTCAGTAATAATTTATTCTGATTATTTTTCATCGGTAACAGGTTACTCACAAGGTCATCTTTGTATTTTGCTCTTTCTAAACCCTAATTTCAAGGATATTTTTTCTTCGAAAT ]
[-] EMBL CD182955 [ TGCAGATG CTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAGGGATGCTGAAGATGACGCTCTTACAAGAAGGCTTGCTGCACTCCGTCAATAAAACCTGTCAACCTCAGTGTTTTGTTGCTTCATCTGGTCAGTAATAATTTATTCTGATTATTTTTCATCGTTAACAGGTTACTCACAAGTTCATCTTTGTATTTTGCTCTTTCTAAACCTTAATTTCAAGGATATTTTTTCTTCGAAAT ]
consensusID : consensus_10206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 502 fasta sequence
[CAGGTGGTGAAAAATATTGGTGCTGTCTCTAATGAACTTGAAAAGGCGATGCGCACCATGGATTTGGAGAAACTCGAAAAGGTCATGAGTAAATTCGAGTCTCAGTTTGAAGATCTCGATATTCGTTCTTTAACTATGGAAAATTCCATGAGGAATATCTTTACTCTTTCAGCTCCTGAGGATGAGATTAATTCACTGATAAAGCAGGTGGCAGAAGAAAACAGTCTTGAAGTTTCACACGCTATTGCAGATGCTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAGGGATGCTGAAGATGACGCTCTTACAAGAAGGTTAGTTGTATACTTGTGTAATATTTCTCACACTAGCCGGTATGAACCCATCCAGCATTCGCATTATGTACATAACTATATGTTTTCAAATATGGTCTTATAACTTGTGTAGTGGGCCACTACTAAGTGTTCACAGAAATATTTTGGAGTGACCTTACCTTTCAGGCTTAAAC]
[-] EMBL CD119098 [CAGGTGGTGAAAAATATTGGTGCTGTCTCTAATGAACTTGAAAAGGCGATGCGCACCATGGATTTGGAGAAACTCGAAAAGGTCATGAGTAAATTCGAGTCTCAGTTTGAAGATCTCGATATTCGTTCTTTAACTATGGAAAATTCCATGAGGAATATCTTTACTCTTTCAGCTCCTGAGGATGAGATTAATTCACTGATAAAGCAGGTGGCAGAAGAAAACAGTCTTGAAGTTTCACACGCTATTGCAGATGCTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAGGGATGCTGAAGATGACGCTCTTACAAGAAGGTTAGTTGTATACTTGTGTAATATTTCTCACACTAGCCGGTATGAACCCATCCAGCATTCGCATTATGTACATAACTATATGTTTTCAAATATGGTCTTATAACTTGTGTAGTGGGCCACTACTAAGTGTTCACAGAAATATTTTGGAGTGACCTTACCTTTCAGGCTTAAAC]
consensusID : consensus_10206#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 303 fasta sequence
[CTCATCTGGTTACTCACAAGTTCACCTTTGTATTTTGCTCTTTCTAAACCTTAATTTCAAGGATATTTTTTCTTCGAAATTAGTTGTACAAACCCGAATTGACCTATTTTTGTTTCATTTCGCAAAACGTTTTTAACATGATGCCCCGTCAGATTTCTTGTATACCTTTGAAGAAATTATATATTTTGCATTGCTCGCTTATCCACTGGAAATGATTTTGTGAAAAAAAATCGGACTTATATGTCTAAACNACNATTTAACTAAGTAATTAATTTAATAAATTGTTAACAATCAATTTAAATT]
[-] EMBL AA999531 [CTCATCTGGTTACTCACAAGTTCACCTTTGTATTTTGCTCTTTCTAAACCTTAATTTCAAGGATATTTTTTCTTCGAAATTAGTTGTACAAACCCGAATTGACCTATTTTTGTTTCATTTCGCAAAACGTTTTTAACATGATGCCCCGTCAGATTTCTTGTATACCTTTGAAGAAATTATATATTTTGCATTGCTCGCTTATCCACTGGAAATGATTTTGTGAAAAAAAATCGGACTTATATGTCTAAACNACNATTTAACTAAGTAATTAATTTAATAAATTGTTAACAATCAATTTAAATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10206#0 AAGGTTTCGGGAGGGGAAATAAACGAAGGAAGTTACATCTAGGGAGTTAACGTCCACATC 60
consensus_10206#2 ------------------------------------------------------------
consensus_10206#1 ------------------------------------------------------------
consensus_10206#0 ACCGTTTGTTTCTCCTTATCAGGAGCAAGCCATATAAAGTCTCTGTTCTTATTCAAGCTT 120
consensus_10206#2 ------------------------------------------------------------
consensus_10206#1 ------------------------------------------------------------
consensus_10206#0 CAAATTATGTTTGGAAACCGTACAGATAAGTTACAGGACTCACTAATACAACTCAGGATT 180
consensus_10206#2 ------------------------------------------------------------
consensus_10206#1 ------------------------------------------------------------
consensus_10206#0 GCAGCGAAGCAAGTAATGCGCTTTTCTGAAAAAGCAGCAAGGGAATCTGAAGTGCAAAAG 240
consensus_10206#2 ------------------------------------------------------------
consensus_10206#1 ------------------------------------------------------------
consensus_10206#0 CAAAAACTAAAAAAGGCTTTAACATCCGGAAATATTGAGTGTGGCAGGATTTATGCTGAA 300
consensus_10206#2 ------------------------------------------------------------
consensus_10206#1 ------------------------------------------------------------
consensus_10206#0 AATGCTATTAGGAAACAGAAAGAGTCAACTAATTACCTCCGGATGGCATCTCGCTTTGAT 360
consensus_10206#2 ------------------------------------------------------------
consensus_10206#1 ------------------------------------------------------------
consensus_10206#0 GCTGTCCAGTCACGCGTACAAACTGCTCTCACAATGAATCAGGTGGTGAAAAATATTGGT 420
consensus_10206#2 ------------------------------------------------------------
consensus_10206#1 ------------------------------------------------------------
consensus_10206#0 GCTGTCTCTAATGAACTTGAAAAGGCGATGCGCACCATGGATTTGGAGAAACTGAAAAGG 480
consensus_10206#2 ------------------------------------------------------------
consensus_10206#1 ------------------------------------------------------------
consensus_10206#0 TCATGAGTAAATTCGAGTCTCAGTTTGAAGATCTCGATATTCGTTCTTTAACTATGGAAA 540
consensus_10206#2 ------------------------------------------------------------
consensus_10206#1 ------------------------------------------------------------
consensus_10206#0 ATTCCATGAGGAATATCTTTACTCTTTCAGCTCCTGAGGATGAGATTAATTCACTGATAA 600
consensus_10206#2 ------------------------------------------------------------
consensus_10206#1 ------------------------------------------------------------
consensus_10206#0 AGCAGGTGGCAGAAGAAAACAGTCTTGAAGTTTCACACGCTATTGCAGATGCTCCTGTTG 660
consensus_10206#2 ------------------------------------------------------------
consensus_10206#1 ------------------------------------------------------------
consensus_10206#0 TTGGTGGTACACTTTCCGTTAATTCAGAGTCATCTAGGGATGCTGAAGATGACGCTCTTA 720
consensus_10206#2 ------------------------------------------------------------
consensus_10206#1 ------------------------------------------------------------
consensus_10206#0 CAAGAAGGCTTGCTGCACTCCGTCAATAAAACCTGTCAACCTCAGTGTTTTGTTGCTTCA 780
consensus_10206#2 ------------------------------------------------------------
consensus_10206#1 --------CAGGTGGTGAAAAATATTGGTGCTGTCTCTAATGAACTTGAAAAGGCGATGC 52
consensus_10206#0 TCTGGTCAGTAATAATTTATTCTGATTATTTTTCATCGTTAACAGGTTACTCACAAGTTC 840
consensus_10206#2 -------------------------------------CTCATCTGGTTACTCACAAGTTC 23
consensus_10206#1 GCACCATGGATTTGGAGAAACTCGAAAAGGTCATGAGTAAATTCGAGTCTCAGTTTGAAG 112
* * * *
consensus_10206#0 ATCTTTGTATTTTGCTCTTTCTAAACCTTAATTTCAAGGATATTTTTTCTTCGAAATTAG 900
consensus_10206#2 ACCTTTGTATTTTGCTCTTTCTAAACCTTAATTTCAAGGATATTTTTTCTTCGAAATTAG 83
consensus_10206#1 ATCTCGATATTCGTTCTTTAACTATGGAAAATTCCATGAGGAATATCTTTACTCTTTCAG 172
* ** **** ** * **** ** * * * * * * * * **
consensus_10206#0 TTGTACAAACCCGAATTGACCTATTTTTGTTTCATTTCGCAAAACGTTTATAACATGATG 960
consensus_10206#2 TTGTACAAACCCGAATTGACCTATTTTTGTTTCATTTCGCAAAACGTTTTTAACATGATG 143
consensus_10206#1 CTCCTGAGGATGAGATTAATTCACTGATAAAGCAGGTGGCAGAAGAAAACAGTCTTGAAG 232
* * *** * * * * ** * *** ** * *** *
consensus_10206#0 CACCGTCAGATTTCTTGTATACCTTTGAAGA-AATTATATATTTTGCATTGCTC---GCT 1016
consensus_10206#2 CCCCGTCAGATTTCTTGTATACCTTTGAAGA-AATTATATATTTTGCATTGCTC---GCT 199
consensus_10206#1 TTTCACACGCTATTGCAGATGCTCCTGTTGTTGGTGGTACACTTTCCGTTAATTCAGAGT 292
* * * * ** * ** * * ** * *** * ** * *
consensus_10206#0 TATC-A------CTG-AAATGATTTTGTGA-AAAAA--TCGA--CTAT-TGTCTAA--CA 1060
consensus_10206#2 TATCCA------CTGGAAATGATTTTGTGA-AAAAAAATCGGACTTATATGTCTAAACNA 252
consensus_10206#1 CATCTAGGGATGCTGAAGATGACGCTCTTACAAGAAGGTTAGTTGTATACTTGTGTAATA 352
*** * *** * **** * * * ** ** * *** * * *
consensus_10206#0 CA-TTTA-CTAGTATTAT-TTATTAATTG--TTACCATCATTTAATTTT-AC-------- 1106
consensus_10206#2 CNATTTA-ACTAAGTAAT-TAATTTAATAAATTGTTAACAATCAATTTA-AATT------ 303
consensus_10206#1 TTTCTCACACTAGCCGGTATGAACCCATCCAGCATTCGCATTATGTACATAACTATATGT 412
* * * * * * ** * * *
consensus_10206#0 ------------------------------------------------------------
consensus_10206#2 ------------------------------------------------------------
consensus_10206#1 TTTCAAATATGGTCTTATAACTTGTGTAGTGGGCCACTACTAAGTGTTCACAGAAATATT 472
consensus_10206#0 ------------------------------
consensus_10206#2 ------------------------------
consensus_10206#1 TTGGAGTGACCTTACCTTTCAGGCTTAAAC 502
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||