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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1030 fasta sequence
[TTTTTTTTTTTTTTGATCAGATTCTTTTGGTTCGTCAATCAATCAACAGCGAGAAATACATAGAAGACACGATGGATCTTTAGTGAATATATGACTATAGTACACAATACAGCAACGTTATAGAGAGAAAATCAAAAAGAATAGGAAGTCTTGAATATAAATAAAAAAGGGATTATGCTTGAAAACACAGAACCAAAATTTATATTAGATAAATATTTATCACGAATAGCTGTTTAATTAAACCCTTTGAACAAAACTTGTGTTCTTAGTTATCCGCACCAAGCTGAATCACTTTCTTTTTAGGATCTTCATATATTTCACTAGGCTGTACAGATGCCAACATGACTAAGCCATATGTTA-ACACAGAAACCAAAAGGAT-GGAGACGATAAGTGATGACCAGACACCAATACTGAAGTACCCGACACAATCTGTGACATCACCAAACACACCATCTTTTACGCCGA-ACGGTTGGACCTGGATGCTAGTGAACTGAATAGAAACTGAATACCCAGAACCTGACGGGAAGATTACTGGTGCAACTGAAGGCTTAGTACACTTGTAACCAAGACTGACAGGGGCTTCAGCCCATTTGATGGCCAAGGGATTTCCAGGCACATTGACGCATGATTTGGAGCCTGACTGACACTTGATACTAACAGATGACTCGGACACACTCCAATAACGGCCGGATTTGCTAAAAGTCAAGCTGACATTAAGG-TC-G-AGATTTCATTAACATTTGATGACGTGAAAACGAGCAAAGATTTTAGATCAGAGCATTTACTGAGTGGAGAAAGTGACAATGAACTTGCCGGTATAGGGACGATACTAGCTGTTTTGCCGCTAACGAGTTTTACAGAAATCGAACGAAGC-AAGAATGCTAAGCAACCAGACACATTGAAATAGGTGTAGTTATCCGTGTGAGTAAGGCTCTGAGCTGCACATGAACTAGTTAGCACGCAAACCAACAAAACTAACAGGACTCTATGATAGCTCATATGAAGACTCATTAAATGAGCGCCTTAGATTAGG]
[+] EMBL AI394906 [TTTTTTTTTTTTTTGATCAGATTCTTTTGGTTCGTCAATCAATCAACAGCGAGAAATACATAGAAGACACGATGGATCTTTAGTGAATATATGACTATAGTACACAATACAGCAACGTTATACAGAGAAAATCAAAAAGAATAGGAAGTCTTGAATATAAATAACAAAGGGATTATGCTTGAAAACACAGAACCAATATTTATATTAGATAAATATTTATCACGAGTAGCTGTTTAACTAACCCCTTTGGA AAAACTTGGGTTCct ]
[+] EMBL CD150393 [ GAGAGAAAATCAAAAAGAATAGGAAGTCTTGAATATAAATAAAAAAGGGATTATGCTTGAAAACACAGAACCAAAATTTATATTAGATAAATATTTATCACGAATAGCTGTTTAATTAAACCCTTTGAACAAAACTTGTGTTCTTAGTTATCCGCACCAAGCTGAATCACTTTCTTTTTAGGATCTTCATATATTTCACTAGGCTGTACAGATGCCAACATGACTAAGCCATATGTTA ACACAGAAACCAAAAGGAT GGAGACGATAAGTGATGACCAGACACCAATACTGAAGTACCCGACACAATCTGTGACATCACCAAACACACCATCTTTTACGCCGA ACGGTTGGACCTGGATGCTAGTGAACTGAATAGAAACTGAATACCCAGAACCTGACGGGAAGATTACTGGTGCAACTGAAGGCTTAGTACACTTGTAACCAAGACTGACAGGGGCTTCAGCCCATTTGATGGCCAAGGGATTTCCAGGCACATTGACGCATGATTTGGAGCCTGACTGACACTTGATACTAACAGATGACTCGGACACACTCCAATAACGGCCGGATTTGCTAAAAGTCAAGCTGACATTAAGGNTC G AGATTTCATTTACATTTGATGACGTNGAAACGAGCANAGATTTTAGATCAGAGCATTTA ]
[+] EMBL CD150383 [ GAGAGAAAATCAAAAAGAATAGGAAGTCTTGAATATAAATAAAAAAGGGATTATGCTTGAAACCACAGACCCAAAATTTATTTTAGATAATTATTTATCACGAATGGTTGTTTAATTAAACCTTTAGAACAAACTTTGTGTTCTTATTTATCCCCACCAAGCTGAATCACTTTCTTTTTAGGATCTTCATATATTTCACTAGGCTGTACAGATGCCAACATGACTAACCCTTTTGTTACCCACACAACCCAGGGGGGTGGGAGACGATAAGTGATGACCAGACACCAATACTGAAGTACCCGACACAATCTGTGACATCACCAAACACACCATCTTTTACGCCGA ACGGTTGGACCTGNATGCTAGTGAACTGAATAGAAACTGAATACCCAGAACCTGACGGGAAGA TACTGNTGCAn ]
[-] EMBL CD177786 [ CCCTTTGAACAAAACTTGTGTTCTTAGTTATCCGCACCAAGCTGAATCATTTTCTTTTAAGGATCTTCATATATTTCACTAGGCTGTACAGATGCCAACATGACTAAGCCATATGTTA ACACAGAAACCAAAAGGAT GGAGACGATAAGTGATGTCCAGACACCAATACTGAAGTACCCGACACAATCTGTGACATCACCAAACACACCATCTTTTACGCCGACACGGTTGGACCTGGATGCTAGTGAACTGAATGGAAACTGAATACCCAGAACCTGACGGGAAGATTACTGGTGCAACTGAAGGCTTAGTACACTTGTAACCAAGACTGACAGGGGCTTCAGCCCATCTGATGGCCAAGGGATTTCCAGGCACATTGACGC ]
[+] EMBL CD177802 [ AGATGCCAACATGACTAAGCCATATGTTA ACACAGAAACCAAAAGGAT GGAGACGATAAGTGATGACCAGACACCAATACTGAAGTACCCGACACAATCTGTGACATCACCAAACACACCATCTTTTACGCCGA ACGGTTGGACCTGGATGCTAGTGAACTGAATAGAAACTGAATACCCAGAACCTGACGGGAAGATTACTGGTGCAACTGAAGGCTTAGTACACTTGTAACCAAGACTGACAGGGGCTTCAGCCCATTTGATGGCCAAGGGATTTCCAGGCACATTGACGCATGATTT ]
[+] EMBL CD171571 [ AGATGCCAACATGACTAAGCCATATGTTA ACACAGAAACCAAAAGGAT GGAGACGATAAGTGATGACCAGACACCAATACTGAAGTACCCGACACAATCTGTGACATCACCAAACACACCATCTTTTACGCCGA ACGGTTGGACCTGGATGCTAGTGAACTGAATAGAAACTGAATACCCAGAACCTGACGGGAAGATTACTGGTGCAACTGAAGGCTTAGTACACTTGTAACCAAGACTGACAGGGGCTTCAGCCCATTTGATGGCCAAGGGATTTCCAGGCACATTGACGCATGATTT ]
[-] EMBL CD177773 [ GATGCCAACATGACTAAGCCATATGTTA ACACAGAAACCAAAAGGAT GGAGACGATAAGTGATGGCCAGACCCCAATACTGAAGTATCCGACACAATCTGTGACATCACCAAACACACCATCTTTTTCGCCGA ACGGTTGGACCTGGATGCTAGTGAACTGAATAGAAACTGAATACCCAGAACCTGACGGGAAGATTACTGGTGCAACTGAAGGCTTAGTACACTTGTAACCAAGACTGACAGGGGCTTCAGCCCATTTGATGGCCAAGGGATTTCCAGGCACATTGACGC ]
[+] EMBL CD199725 [ ACACAATCTGTGACATCACCAAACACACCATCTTTTACGCCGA ACGGTTGGACCTGGATGCTAGTGAACTGAATAGAAACTGAATACCCAGAACCTGACGGGAAGATTACTGGTGCAACTGAAGGCTTAGTACACTTGTAACCAAGACTGACAGGGGCTTCAGCCCATTTGATGGCCAAGGGATTTCCAGGCACATTGACGCATGATTTGGAGCCTGACTGACACTTGATACTAACAGATGACTC ]
[-] EMBL CD189193 [ ACTGAATAGAAACTGAATACCCAGAACCTGACGGGAAGATTACTGGTGCAACTGAAGGCTTAGTACACTTGTAACCAAGACTGACAGGGGCTTCAGCCCATTTGATGGCCAAGGGATTTCCAGGCACATTGACGCATGATTTGGAGCCTGACTGACACTTGATACTAACAGATGACTCGGACACACTCCAATAACGGCCGGATTTGCTAAAAGTCAAGCTGACATTAAGG TCGG AGATTTCATTAACATTTGATGACGTGAAAACGAGCAAAGATTTTAGATCAGAGCATTTACTGAGTGGAGAAAGTGACAATGAACTTGCCGGTATAGGGACGATACTAGCTGTTTTGCCGCTAACGAGTTTTACAGAAATCGAACGA ]
[+] EMBL CD177692 [ TGTAACCAAGACTGACAGGGGCTTCAGCCCATTTGATGGCCAAGGGATTTCCAGGCACATTGACGCATGATTTGGAGCCTGACTGACACTTGATACTAACAGATGACTCGGACACACTCCAATAACGGCCGGATTTGCTAAAAGTCAAGCTGACATTAAGG TCGG AGATTTCATTAACATTTGATGACGTGAAAACGAGCAAAGATTTTAGATCAGAGCATTTACTGAGTGGAGAAAGTGACAATGAACTTGCCGGTATAGGGACGATACTAGCTGTTTTGCCGCTAACGAGTTTTACAGAAATCGAACGAAGC AAGAATGCTAAGCAACCAGACACAT ]
[-] EMBL BE505143 [ GGCCGGATTTGCTAAAAGTCAAGCTGACATTAAGG TC GNAGATTTCATTAACATTTGATGACGTGAAAACGAGCAAAGATTTTAGATCAGAGCATTTACTGAGTGGAGAAAGTGACAATGAACTTGCCGGTATAGGGACGATACTAGCTGTTTTGCCGCTAACGAGTTTTACAGAAATCGAACG AGCAAAGAATGCTAAGCANCCAGACACATTGAAATAGGTGTAGTTATCCGTGTGAGTAAGGCTCTGAGCTGCACATGAACTAGTTAGCACGCAAACCAACAAAAC ]
[+] EMBL CD181676 [ GTGACAATGAACTTGCCGGTATAGGGACGATACTAGCTGTTTCGCCGCTAACGAGCTTTACAGAAATCGAACG AGCAAAGAATGCTAAGCAACCAGACACATTGAAATAGGTGTAGTTATCCGTGTGAGTAAGACTCTGAGCTGCACATGAACTAGTTAGCACGCAAACCAACAAAACTAACAGGACTCTATGATAGCTCATATGAAGACTCATTAAATGAGCGCCTTAGATTAGG]
consensusID : consensus_10208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 384 fasta sequence
[TTCTTTATTTTTTTTAAATTGGTCCGGATCTCTTAATTTTTTAAACACACACAAGAGAGAGATATATATAGGAGACAATGGGGCTCTATAGTGTATATGTGTCTAGTGTACACAACAGCAGAGCTATATAGAGAGAATCATCAAGAATAGGAAGTCTTGATGATAAATAATAAAGGGAGTATGCTTGTTAACACAGCACCACCATTTATATTAGATAAATATTTATCACGACTAGCTGTTTAATTAAACCCTTTGAACAAAACTTGTGTTCTTACTTATCCGCACGAAGCTGCAGCATTCACTTCTTATGATCGTCATACATTTCACTCAGCTGGCGAGATACCAGCATGAATGAGCCATCTATTTGTACAGACAGCAAACAGA]
[+] EMBL AI395233 [TTCTTTATTTTTTTTAAATTGGTCCGGATCTCTTAATTTTTTAAACACACACAAGAGAGAGATATATATAGGAGACAATGGGGCTCTATAGTGTATATGTGTCTAGTGTACACAACAGCAGAGCTATATAGAGAGAATCATCAAGAATAGGAAGTCTTGATGATAAATAATAAAGGGAGTATGCTTGTTAACACAGCACCACCATTTATATTAGATAAATATTTATCACGACTAGCTGTTTAATTAAACCCTTTGAACAAAACTTGTGTTCTTACTTATCCGCACGAAGCTGCAGCATTCACTTCTTATGATCGTCATACATTTCACTCAGCTGGCGAGATACCAGCATGAATGAGCCATCTATTTGTACAGACAGCAAACAGA]
consensusID : consensus_10208#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 251 fasta sequence
[GCCGATTCTTTTATTTGGGGGATCAATCAACAGCGAGAAATAAATAGAGGACAAGATNGATCTTTAGTGAATATATGGCTATNGTNCACAATACAGCAACGTTATAGAGAGANAATCAAAAAGAATAGGAAGTCTTGAATATAANTGGGGGGGGGATTAGGCTTCAGCACACAAAACCAAAATTTATATTAGATAAATNTTTTTCACNAATACCTTTTTAATTAAACCCTTTTAACAAAACTTTTTCTCNT]
[+] EMBL AA999271 [GCCGATTCTTTTATTTGGGGGATCAATCAACAGCGAGAAATAAATAGAGGACAAGATNGATCTTTAGTGAATATATGGCTATNGTNCACAATACAGCAACGTTATAGAGAGANAATCAAAAAGAATAGGAAGTCTTGAATATAANTGGGGGGGGGATTAGGCTTCAGCACACAAAACCAAAATTTATATTAGATAAATNTTTTTCACNAATACCTTTTTAATTAAACCCTTTTAACAAAACTTTTTCTCNT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10208#0 ------TTTTTTTTTTTTTTGATCAGATTCTTTTGGTTCGTCAATCAATCAACAGCGAGA 54
consensus_10208#2 ----------------------GCCGATTCTTTTATTTGGGGGATCAATCAACAGCGAGA 38
consensus_10208#1 TTCTTTATTTTTTTTAAATTGGTCCGGATCTCTTAATTTTTTAAACACACACAAGAGAGA 60
* * *** ** ** * ** ** ** ****
consensus_10208#0 AATACATAGAAGACACGATGGATCTTTAGTGAATATATGACTATAGTACACAATACAGCA 114
consensus_10208#2 AATAAATAGAGGACAAGATNGATCTTTAGTGAATATATGGCTATNGTNCACAATACAGCA 98
consensus_10208#1 GATATATATAGGAGACAATGGGGCTCTATAGTGTATATGTGTCTAGTGTACACAACAGCA 120
*** *** * ** * ** * ** ** * ****** * * ** *** ******
consensus_10208#0 ACGTTATAGAGAGAAAATCAAAAAGAATAGGAAGTCTTGAATATAAATAAAAAAGGGATT 174
consensus_10208#2 ACGTTATAGAGAGANAATCAAAAAGAATAGGAAGTCTTGAATATAANTGGGGGGGGGATT 158
consensus_10208#1 GAGCTATATAGAGAGAATCATCAAGAATAGGAAGTCTTGATGATAAATAATAAAGGGAGT 180
* **** ***** ***** ****************** **** * **** *
consensus_10208#0 ATGCTTGAAAACACAGAACCAAAATTTATATTAGATAAATATTTATCACGAATAGCTGTT 234
consensus_10208#2 AGGCTTCAGCACACAAAACCAAAATTTATATTAGATAAATNTTTTTCACNAATACCTTTT 218
consensus_10208#1 ATGCTTGTTAACACAGCACCACCATTTATATTAGATAAATATTTATCACGACTAGCTGTT 240
* **** ***** **** ***************** *** **** * ** ** **
consensus_10208#0 TAATTAAACCCTTTGAACAAAACTTGTGTTCTTAGTTATCCGCACCAAGCTGAATCACTT 294
consensus_10208#2 TAATTAAACCCTTTTAACAAAACTTTTTCTCNT--------------------------- 251
consensus_10208#1 TAATTAAACCCTTTGAACAAAACTTGTGTTCTTACTTATCCGCACGAAGCTGCAGCATTC 300
************** ********** * ** *
consensus_10208#0 TCTTTTTAGGATCTTCATATATTTCACTAGGCTGTACAGATGCCAACATGACTAAGCCAT 354
consensus_10208#2 ------------------------------------------------------------
consensus_10208#1 ACTTCTTATGATCGTCATACATTTCACTCAGCTGGCGAGATACCAGCATGAATGAGCCAT 360
consensus_10208#0 ATGTTAACACAGAAACCAAAAGGATGGAGACGATAAGTGATGACCAGACACCAATACTGA 414
consensus_10208#2 ------------------------------------------------------------
consensus_10208#1 CTATTTGTACAGACAGCAAACAGA------------------------------------ 384
consensus_10208#0 AGTACCCGACACAATCTGTGACATCACCAAACACACCATCTTTTACGCCGAACGGTTGGA 474
consensus_10208#2 ------------------------------------------------------------
consensus_10208#1 ------------------------------------------------------------
consensus_10208#0 CCTGGATGCTAGTGAACTGAATAGAAACTGAATACCCAGAACCTGACGGGAAGATTACTG 534
consensus_10208#2 ------------------------------------------------------------
consensus_10208#1 ------------------------------------------------------------
consensus_10208#0 GTGCAACTGAAGGCTTAGTACACTTGTAACCAAGACTGACAGGGGCTTCAGCCCATTTGA 594
consensus_10208#2 ------------------------------------------------------------
consensus_10208#1 ------------------------------------------------------------
consensus_10208#0 TGGCCAAGGGATTTCCAGGCACATTGACGCATGATTTGGAGCCTGACTGACACTTGATAC 654
consensus_10208#2 ------------------------------------------------------------
consensus_10208#1 ------------------------------------------------------------
consensus_10208#0 TAACAGATGACTCGGACACACTCCAATAACGGCCGGATTTGCTAAAAGTCAAGCTGACAT 714
consensus_10208#2 ------------------------------------------------------------
consensus_10208#1 ------------------------------------------------------------
consensus_10208#0 TAAGGTCGAGATTTCATTAACATTTGATGACGTGAAAACGAGCAAAGATTTTAGATCAGA 774
consensus_10208#2 ------------------------------------------------------------
consensus_10208#1 ------------------------------------------------------------
consensus_10208#0 GCATTTACTGAGTGGAGAAAGTGACAATGAACTTGCCGGTATAGGGACGATACTAGCTGT 834
consensus_10208#2 ------------------------------------------------------------
consensus_10208#1 ------------------------------------------------------------
consensus_10208#0 TTTGCCGCTAACGAGTTTTACAGAAATCGAACGAAGCAAGAATGCTAAGCAACCAGACAC 894
consensus_10208#2 ------------------------------------------------------------
consensus_10208#1 ------------------------------------------------------------
consensus_10208#0 ATTGAAATAGGTGTAGTTATCCGTGTGAGTAAGGCTCTGAGCTGCACATGAACTAGTTAG 954
consensus_10208#2 ------------------------------------------------------------
consensus_10208#1 ------------------------------------------------------------
consensus_10208#0 CACGCAAACCAACAAAACTAACAGGACTCTATGATAGCTCATATGAAGACTCATTAAATG 1014
consensus_10208#2 ------------------------------------------------------------
consensus_10208#1 ------------------------------------------------------------
consensus_10208#0 AGCGCCTTAGATTAGG 1030
consensus_10208#2 ----------------
consensus_10208#1 ----------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||