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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 583 fasta sequence
[CATACAAGTAATATGAACCTCAAATCTCGATTTTGTAGCCAAGGTGTAGCTGTGAATAACACCTTATATATTTCAGGCCAGTTGGGTCTCGTTCCTGACACAATGC-TTTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCTCCTCACTTTTGTCAGGAGCTTTGCTCAGTAAAGTTCTAAATTTTAGTAATGAATAAAGAAAATCGTAATTCTTCACAACTTTGGAGTGTTCTTGCACGCGCAGTCAAGTGTAGTTACAAAGAAGGAAAGCCTAAAGTATCTTGTAACAGGCACTTTGAAGCTAATCATTTGACGAAAA]
[+] EMBL CD154030 [CATACAAGTAATATGAACCTCAAATCTCGATTTTGTAGCCAAGGTGTAGCTGTGAATAACACCTTATATATTTCAGGCCAGTTGGGTCTCGTTCCTGACACAATGCTTTTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCTCCTCACTTTTGTCAGGAGCTTTGCTCAGTAAAGTTCTAAATTTTAGTAATGAATAAAGAAAATCGTAATTCTTCACAACTTTGGAGTGTTCTTGCACGCGCAGTCAAGTGTAGTTACAAAGAAGGAAAGCCTAAAGTATCTTGTAACAGGCACTTTGAAGCTAATCATTTGACGAAAA]
[+] EMBL CD166709 [ cCCAA GTGTAGCTGTGAATAACACCTTATATATTTCAGG CAGTTGGGTCTCGTTCCTGACACAATGC TTTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTT ]
[+] EMBL CD188033 [ TTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCT ]
[+] EMBL CD188085 [ TTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCT ]
[+] EMBL CD188116 [ TTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCT ]
[+] EMBL CD188118 [ TTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCT ]
[+] EMBL CD188154 [ TTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCT ]
[+] EMBL CD167280 [ gcTTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATATTTTTCAGGTCCATATCCAGCTCGAGCTACTTACCAAGTTGAATGTTTACCGAAAAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGGATAATCTGGCTCCTCACTTTTGTCAGGAGC ]
[+] EMBL CD132500 [ TTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCT ]
consensusID : consensus_10214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 551 fasta sequence
[CGGGTCGAAGGTCAGTTTTGATTTTCGGTTTTCCAATTACCTACTTCCGATGTCTAAATTGGGTCGTAAAATTATAAATACACCCAGAGCACCAAAATCTATAGGACCATACAACCAAGGTGTAGCTGTGAATAACACCTTATATATTTCAGGCCAGTTGGGTCTCGTTCCTGACACAATGCTTTTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATGTAATCTTTGGTACTAATAACTCTACCCTCTTTCAGATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAGTATGTTGTTTGTTTGAATAATTCGATAATCAGAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCT]
[-] EMBL BG932206 [CGGGTCGAAGGTCAGTTTTGATTTTCGGTTTTCCAATTACCTACTTCCGATGTCTAAATTGGGTCGTAAAATTATAAATACACCCAGAGCACCAAAATCTATAGGACCATACAACCAAGGTGTAGCTGTGAATAACACCTTATATATTTCAGGCCAGTTGGGTCTCGTTCCTGACACAATGCTTTTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGC ]
[+] EMBL CD111988 [ CAGTTTTGATTTTCGGTTTTCCAATTACCTACTTCCGATGTCTAAATTGGGTCGTAAAATTATAAATACACCCAGAGCACCAAAATCTATAGGACCATACAACCAAGGTGTAGCTGTGAATAACACCTTATATATTTCAGGCCAGTTGGGTCTCGTTCCTGACACAATGCTTTTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAca ]
[+] EMBL CD188037 [ TTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATGTAATCTTTGGTACTAATAACTCTACCCTCTTTCAGATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAGTATGTTGTTTGTTTGAATAATTCGATAATCAGAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCT]
consensusID : consensus_10214#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence
[TTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATGCAATCTTTGGTACTAATAACTCTACCCTCTTTCAGATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCTC]
[-] EMBL CD188114 [TTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGAAATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGCCGATATGAATGATTTCGCGAAAGTTAATACGATATATGCGCAATGCAATCTTTGGTACTAATAACTCTACCCTCTTTCAGATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAAGTTGAATGTTTACCGAAAAATGGGAAAATAGAAATAGAAGCAATAGCAGTTCAAGAAGAATCAGGATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCTC]
consensusID : consensus_10214#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence
[GATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCTCCTCACTTTTGTCAGGAGCTTTGCTCAAAAATCGTAATTCTTCACAACTTTGGAGTGTTCTTGCACGCGCAGTCAAGTGTAGTTACAAAGAAGGAAAGCCTAAATTATCTTGTAACAGGCACTTTGAAGCTAATCATTTGACGAAAAAGGTTTTTGAAATCCACTCATTAGAACAACCTGCCGAGATAGATGAAAATACATTATGATTGGAGCTTGTACCTCGTCCAGTTATTCACCAGTCAAATGATTCACTGGAGTTACCCACTATTGTTTCTTCTTTACATGTACGGAT]
[+] EMBL CD061106 [GATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCTCCTCACTTTTGTCAGGAGCTTTGCTCAAAAATCGTAATTCTTCACAACTTTGGAGTGTTCTTGCACGCGCAGTCAAGTGTAGTTACAAAGAAGGAAAGCCTAAATTATCTTGTAACAGGCACTTTGAAGCTAATCATTTGACGAAAAAGGTTTTTGAAATCCACTCATTAGAACAACCTGCCGAGATAGATGAAAATACATTATGATTGGAGCTTGTACCTCGTCCAGTTATTCACCAGTCAAATGATTCACTGGAGTTACCCACTATTGTTTCTTCTTTACATGTACGGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10214#1 CGGGTCGAAGGTCAGTTTTGATTTTCGGTTTTCCAATTACCTACTTCCGATGTCTAAATT 60
consensus_10214#2 ------------------------------------------------------------
consensus_10214#0 ------------------------------------------------------------
consensus_10214#3 ------------------------------------------------------------
consensus_10214#1 GGGTCGTAAAATTATAAATACACCCAGAGCACCAAAATCTATAGGACCATACAACCAAGG 120
consensus_10214#2 ------------------------------------------------------------
consensus_10214#0 ------------CATACAAGTAATATGAACCTCAAATCTC----GATTTTGTAGCCAAGG 44
consensus_10214#3 ------------------------------------------------------------
consensus_10214#1 TGTAGCTGTGAATAACACCTTATATATTTCAGGCCAGTTGGGTCTCGTTCCTGACACAAT 180
consensus_10214#2 ------------------------------------------------------------
consensus_10214#0 TGTAGCTGTGAATAACACCTTATATATTTCAGGCCAGTTGGGTCTCGTTCCTGACACAAT 104
consensus_10214#3 ------------------------------------------------------------
consensus_10214#1 GCTTTTTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGA 240
consensus_10214#2 -----TTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGA 55
consensus_10214#0 GCTT-TTGCTGGAGATGATGTTGAGTCACAAACTCATCAGTCTCTTAAAAACATCAGAGA 163
consensus_10214#3 -------GATCTCAAGGAAATGAAAGCCTAGAATAATCTGGCTCCTCA---CTTTTGTCA 50
* * * ** * * * * * * *** * *** * * * * * *
consensus_10214#1 AATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGC 300
consensus_10214#2 AATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGC 115
consensus_10214#0 AATAGTTCAGTCTGCTGGTTTTACTATGCGTGATGTGGTTAAGACTACTTTGTTTTTAGC 223
consensus_10214#3 GGAGCTTTGCTCAAAAATCGTAATTCTTCACAAC----TTTGGAGTGTTCTTGCACGCGC 106
** ** * * * * * * ** ** * * * **
consensus_10214#1 CGATATGAATGATTTCGCGAAAGTTAATACGATATATGC--GCAATGTAATCTTTGGTAC 358
consensus_10214#2 CGATATGAATGATTTCGCGAAAGTTAATACGATATATGC--GCAATGCAATCTTTGGTAC 173
consensus_10214#0 CGATATGAATGATTTCGCGAAAGTTAATACGATATATGC--GCAAT-------------- 267
consensus_10214#3 AGTCAAGTGTAGTTACAAAGAAGGAAAGCCTAAATTATCTTGTAACAGGCACTTTGAAGC 166
* * * * ** * *** ** * * ** * * **
consensus_10214#1 TAATAACTCTACCCTCTTTCAGATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAA 418
consensus_10214#2 TAATAACTCTACCCTCTTTCAGATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAA 233
consensus_10214#0 ----------------------ATTTTTCAGATCCATATCCAGCTCGGGCTACTTACCAA 305
consensus_10214#3 TAATCATTTGACGAAAA---AGGTTTTTGAAATCCA---CTCATTAGAACAACCTGCCGA 220
***** * ***** * * * * ** * ** *
consensus_10214#1 GTTGAATGTTTACCGAAAGTATGTTGTTTGTTTGAATAATTCGATAATCAGAATGGGAAA 478
consensus_10214#2 GTTGAATGTTTACCGAAA---------------------------------AATGGGAAA 260
consensus_10214#0 GTTGAATGTTTACCGAAA---------------------------------AATGGGAAA 332
consensus_10214#3 GATAGATGAAAATACATTAT-------------------------------GATTGGAGC 249
* * *** * * ** ***
consensus_10214#1 ATAGAAATAGA--AGCAAT--AGCAGTTCAA-GAAGAATCAGGATCTCAAGGAAATGAAA 533
consensus_10214#2 ATAGAAATAGA--AGCAAT--AGCAGTTCAA-GAAGAATCAGGATCTCAAGGAAATGAAA 315
consensus_10214#0 ATAGAAATAGA--AGCAAT--AGCAGTTCAA-GAAGAATCAGGATCTCAAGGAAATGAAA 387
consensus_10214#3 TTGTACCTCGTCCAGTTATTCACCAGTCAAATGATTCACTGGAGTTACCCACTATTGTTT 309
* * * * ** ** * **** ** ** * * * * * **
consensus_10214#1 GCCTAGAATA-ATCTGGCT----------------------------------------- 551
consensus_10214#2 GCCTAGAATA-ATCTGGCTC---------------------------------------- 334
consensus_10214#0 GCCTAGAATA-ATCTGGCTCCTCACTTTTGTCAGGAGCTTTGCTCAGTAAAGTTCTAAAT 446
consensus_10214#3 CTTCTTTACATGTACGGAT----------------------------------------- 328
* * * ** *
consensus_10214#1 ------------------------------------------------------------
consensus_10214#2 ------------------------------------------------------------
consensus_10214#0 TTTAGTAATGAATAAAGAAAATCGTAATTCTTCACAACTTTGGAGTGTTCTTGCACGCGC 506
consensus_10214#3 ------------------------------------------------------------
consensus_10214#1 ------------------------------------------------------------
consensus_10214#2 ------------------------------------------------------------
consensus_10214#0 AGTCAAGTGTAGTTACAAAGAAGGAAAGCCTAAAGTATCTTGTAACAGGCACTTTGAAGC 566
consensus_10214#3 ------------------------------------------------------------
consensus_10214#1 -----------------
consensus_10214#2 -----------------
consensus_10214#0 TAATCATTTGACGAAAA 583
consensus_10214#3 -----------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||