These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10217#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 795 fasta sequence [CCCGGCCAANATTCGGCACGAGGTCTTATCTGCAACGCCACCCAGTTCCCCTTTGTCTAGAAAGCATTCTACGAGTTCGTCAAGCGATTCTTTAATTTCGAACATACTCGAGTCCGATGGAATTCGTCTTCGCCACTGTACTCAGCCTAATCACGAAGCCTCCGAAACCTACTCGTGTTTCTCTTTCGAACATCTAGTACCTCGAGTCAGTGAAATACTTCGTGACATACCAGCGTCTCGGATCCGTGAAGCTCTTGTGAATACTCAAGGTGACGTTGAATCAGCTATTGACTACCTTTTGGAAAATTCAAATGATTCGGATACTCAACGAGGCAGTAATCAGGTCGATCACACCATGTCTGTTATGTCTCCCAGCAGGTTCGCAGTTGCTGCCCCACAGTTCCTACCGAACTCTAGTTTACGTCAATTAAGCCTTAC-TGAACGTCGTGAGGCTCTTTTAAACCATGCGCGTCAGCTGTATCGTTCTCGTCAACAAAAATCCGCTTAATTCATGGCGTAAGATCCCGCCGTTTAACAGTCCTTTTAAAGTTACTGAACTGTGATTCTTTTCATATATCTCTGACCGCCAACTACTTTCTCGTAAACTTAAATGTTAATGAGTTAAAGCCATATCTGATAAATCCTGATTACTTTAACTCTCAGTTTATTAGTTTTTCATCATTGTATAAT-AATAGCAAGATATCTTTCGATTTTACATGTTTTTACATTACTTGACTT-TGTGGTGATCTGTATAATTTTAAAAATTCCCATATTGTTGATTNAGNNAC-ATNTATA] [+] EMBL CD080754 [CCCGGCCAANATTCGGCACGAGGTCTTATCTGCAACGCCACCCAGTTCCCCTTTGTCTAGAAAGCATTCTACGAGTTCGTCAAGCGATTCTTTAATTTCGAACATACTCGAGTCCGATGGAATTCGTCTTCGCCACTGTACTCAGCCTAATCACGAAGCCTCCGAAACCTACTCGTGTTTCTCTTTCGAACATCTAGTACCTCGAGTCAGTGAAATACTTCGTGACATACCAGCGTCTCGGATCCGTGAAGCTCTTGTGAATACTCAAGGTGACGTTGAATCAGCTATTGACTACCTTTTGGAAAATTCAAATGATTCGGATACTCAACGAGGCAGTAATCAGGTCGATCACACCATGTCTGTTATGTCTCCCAGCAGGTTCGCAGTTGCTGCCCCACAGTTCCTACCGAACTCTAGTTTACGTCAATTAAGCCTTAC TGAACGTCGTGAGGCTCTTTTAAACCATGCGCGTCAGCTGTATCGTTCTCGTCAACAAAAATCCGCTTAATTCATGGCGTAAGATCCCGCCGTTTAACAGTCCTTTTAAAGTTACTGAACTGTGATTCTTTTCATATATCTCTGACCGCCAACTACTTTCTCGTAAACTTAAATGTTAATGAGTTAAAGCCATATCTGATAAATCCTGATTACTTTAACTCTCAGTTTATTAGTTTTTCATCATTGTATAATAAATAGC AGATATCTTTCGATTNTACATGTTNTTACATTACTTGACTTNTGTGGTGATCTGTATAATTNTAAAAATTCCCATANTGTTGATTNAGNNAC ATNTAT ] [+] EMBL AI975531 [ ctagtTTATCTGCAACGCCACCCAGTTCCCCTTTGTCTAGAAAGCATTCTACGAGTTCGTCAAGCGATTCTTTGATTTCGAACATACTCGAGTCCGATGGAATTCGTCTTCGCCACTGTACTCAGCCTAATCACGAAGCCTCCGAAACCTACTCGTGTTTCTCTTTCGAACATCTAGTACCTCGAGTCAGTGAAATACTTCGTGACATACCAGCGTCTCGGATCCGTGAAGCTCTTGTGAATACTCAAGGTGACGTTGAATCAGCTATTGACTACCTTTTGGAAAATTCAAATGATTCGGATACTCAACGAGGCAGTAATCAGGTCGATCACACCATGTCTGTTATGTCTCCCAGCAGGTTCGCAGTTGCTGCCCCACAGTTCCTACCGAACTCTAGTTTACGTCAATTAAGCCTTAC TGAACGTCGTGAGGCTCTTTTAAACCAT ] [-] EMBL CD074678 [ AAATACTTCGTGACATACCAGCGTCTCGGATCCGTGAAGCTCTTGTGAATACTCAAGGTGACGTTGAATCAGCTATTGACTACCTTTTGGAAAATTCAAATGATTCGGATACTCAACGAGGCAGTAATCAGGTCGATCACACCATGTCTGTTATGTCTCCCAGCAGGTTCGCAGTTGCTGCCCCACAGTTCCTACCGAACTCTAGTTTACGTCAATTAAGCCTTAC TGAACGTCGTGAGGCTCTTTTAAACCATGCGCGTCAGCTGTATCGTTCTCGTCAACAAAAATCCGCTTAATTCATGGCGTAAGATCCCGCCGTTTAACAGTCCTTTTAAAGTTACTGAACTGTGATTCTTTTCATATATCTCTGACCGCCAACTACTTTCTCGTAAACTTAAATGTTAATGAGTTAAAGCCATATCTGATAAATCCTGATTACTTTAACTCTCAGTTTATTAGTTTTTCATCATTGTATAAT AATAGCAAGATATCTTTCGATTTTACATGTTTTTACATTACTTGACTT TGTGGTGATCTGTATAATTTTAAAAATTCCCATATTG TGATTTAG AACAATATATA] [+] EMBL BG931488 [ gTCCGTGAAGCTCTTGTGAATACTCAAGGTGACGTTGAATCAGCTATTGACTACCTTTTGGAAAATTCAAATGATTCGGATACTCAACGAGGCAGTAATCAGGTCGATCACACCATGTCTGTTATGTCTCCCAGCAGGTTCGCAGTTGCTGCCCCACAGTTCCTACCGAACTCTAGTTTACGTCAATTAAGCCTTAC TGAACGTCGTGAGGCTCTTTTAAACCATGCGCGTCAGCTGTATCGTTCTCGTCAACAAAAATCCGCTTAATTCATGGCGTAAG ] [-] EMBL AI395213 [ tacCCGAACT TAGTTAACGTCAATTAAG CTTACTTGAACGTCGTGA GCTCTTTTAAACCATGCGCGTCAGCTGTATCGTTCTCGTCAACAAAAA CCGCTTAATTCATGGCGTAAGATCCCGCCGTTTAACAGTCCTTTTAAAGTTACTGAACTGTGATTCTTTTCATATATCTCTGACCGCCAACTACTTTCTCGTAAACTTAAATGCTAATGAGTTAAAGCCATATCTGATAAATCCTGATTACTTTAACTCTCAGTTTATTAGTTTTTCATCATTGTATAAT AATAGCAAGATATCTTTCGATTTTACATGTTTTTACATTACTTGACTT TGTGGTGATCTGTATAATGTTAAAAATTCCCATATTGTga ] consensusID : consensus_10217#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 776 fasta sequence [GAGGATTGTATTACACCGAACACACATGTCTTCCATTGGAAGTCAATTCCACATAGCAAAGAAAAGACTCGTTCTGCCCCTGAATTCGTTCTTCGGTGTGCACGAGACAATCATCAACCTGTCCACCTACTTCCCGAAAAAGCACCGTCTGGTTTATCCGATTGCCTTTTCAAGTTTGATTACAAGATGTTTGGTTCGGTGGATAAAGTGCAACCTGTGGCACTTAAGGTTCATCGAATCTTCCCTATTAAATTAGTGGTTCATCCTGTTTTTTGGTTTATGGAGCTTTTGTGGCAGTTCTTCACTCCTTTTACATATTATCATGTCAAATATTTAACTCCGATTAGTCGGATGTCTAATGAAACAGATGAGGATTTCTGTGAAAGGGTTCGTTCCGCTATTGCTTCCTCCCTCGGAGCTACACTCAGCCCAATAAATGCTGAACATCTGGCAGATTACACTGGAACGGAATCACCGATTGCTTCGCTTTCTCTCCCTAATGCACGATCTTGTACTATGTCTAGTTTATCTGCAACGCCACCCAGTTCCCCTTTGTCTAGAAAGCATTCTACGAGTTCGTCAAGCGATTCTTTAATTTCGAACATACTCGAGTCCGATGGAATTCGTCTTCGCCACTGTACTCAGCCTAATCACGAAGCCTCCGAAACCTACTCGTGTTTCTCTTTCGAACATCTAGTACCTCGAGTCAGTGAAATACTTCGTGACATACCAGCGTCTCAGATCCGTGAAGCTCTTGTGAATACTCAAGGTGACGT] [+] EMBL CD194637 [GAGGATTGTATTACACCGAACACACATGTCTTCCATTGGAAGTCAATTCCACATAGCAAAGAAAAGACTCGTTCTGCCCCTGAATTCGTTCTTCGGTGTGCACGAGACAATCATCAACCTGTCCACCTACTTCCCGAAAAAGCACCGTCTGGTTTATCCGATTGCCTTTTCAAGTTTGATTACAAGATGTTTGGTTCGGTGGATAAAGTGCAACCTGTGGCACTTAAGGTTCATCGAATCTTCCCTATTAAATTAGTGGTTCATCCCGTTTTTTGGTTTATGGAGCTTTTGTGGCAGTTCTTCACTCCTTTTACATATTATCATGTCAAATATTTAACTCCGATTAGTCGGATGTCTAATGAAACAGATGAGGATTTCTGTGAAAGGGTTCGTTCCGCTATTGCTTCCTCCCTCGGAGCTACACTCAGCCCAATAAATGCTGAACATCTGGCAGATTACACTGGAACGGAATCACCGATTGCTTCGCTTTCTCTCCCTAATGCACGATCTTGTACTATGTCTAGTTTATCTG ] [-] EMBL CD177959 [ TGGAAGCCAATTCCACAAAGCAAAGAAAGGACTCGTTCTGTCCCTGAATTCGTTCTTCGGTGGGCACGAGACAATCATCAACCTGTCCACCTACTTCCCGAAAAAGCACCGTCTGGTTTATCCGATTGCCTTTTCAAGTTTGATANCAAGATGTTTGGTTCGGTGGATAAAGTGCAACCTGTGGCACTTAAGGTTCATCGAATCTTCCCTATTAAATTAGTGGTTCATCCTGTTTTTTGGTTTATGGAGCTTTTGTGGCAGTTCTTCACTCCTTTTACATATTATCATGTCAAATATTTAACTCCGATTAGTCGGATGTCTAATGAAACAGATGAGGATTTCTGTGAAAGGGTTCGTTCCGCTATTGCTTCCTCCCTCGGAGGTAC ] [+] EMBL CD061450 [ CATCAACCTGTCCACCTACTTCCCGAAAAAGCACCGTCTGGTTTATCCGATTGCCTTTTCAAGTTTGATTACAAGATGTTTGGTTCGGTGGATAAA GTGGCACTTAAGGTTCATCGAATCTTCCCTATTAAATTAGTGGTTCATCCTGTTTTTTGGTTTATGGAGCTTTTGTGGCAGTTCTTCACTCCTTTTACATATTATCATGTCAAATATTTAACTCCGATTAGTCGGATGTCTAATGAAACAGATGAGGATTTCTGTGAAAGGGTTCGTTCCGCTATTGCTTCCTCCCTCGGAGCTACACTCAGCCCAATAAATGCTGAACATCTGGCAGATTACACTGGAACGGAATCACCGATTGCTTCGCTTT ] [+] EMBL CD061485 [ CATCAACCTGTCCACCTACTTCCCGAAAAAGCACCGTCTGGTTTATCCGATTGCCTTTTCAAGTTTGATTACAAGATGTTTGGTTCGGTGGATAAA GTGGCACTTAAGGTTCATCGAATCTTCCCTATTAAATTAGTGGTTCATCCTGTTTTTTGGTTTATGGAGCTTTTGTGGCAGTTCTTCACTCCTTTTACATATTATCATGTCAAATATTTAACTCCGATTAGTCGGATGTCTAATGAAACAGATGAGGATTTCTGTGAAAGGGTTCGTTCCGCTATTGCTTCCTCCCTCGGAGCTACACTCAGCCCAATAAATGCTGAACATCTGGCAGATTACACTGGAACGGAATCACCGATTGCTTCGCTTT ] [-] EMBL CD061463 [ ATCAACCTGTCCACCTACTTCCCGAAAAAGCACCGTCTGGTTTATCCGATTGCCTTTTCAAGTTTGATTACAAGATGTTTGGTTCGGTGGATAAAGTGCAACCTGTGGCACTTAAGGTTCATCGAATCTTTCCTATTAAATTAGTGGTTCATCCTGTTTTTTGGTTTATGGAGCTTTTGTGGCAGTTCTTCACTCCTTTTACATATTATCATGTCAAATATTTAACTCCGATTAGTCGGATGTCTAATGAAACAGATGAGGATTTCTGTGAAAGGGTTCGTTCCGCTATTGCTTCCTCCCTCGGAGCTACACTCAGCCCAATAAATGCTGAACATCTGGCAGATTACACTGGAACGGAATCACCGATTGCTTCGCTTTC ] [-] EMBL BG932608 [ AGATTACACTGGAACGGAATCACCGATTGCTTCGCTTTCTCTCCCTAATGCACGATCTTGTACTATGTCTAGTTTATCTGCAACGCCACCCAGTTCCCCTTTGTCTAGAAAGCATTCTACGAGTTCGTCAAGCGATTCTTTAATTTCGAACATACTCG ] [+] EMBL BG932485 [ AGATTACACTGGAACGGAATCACCGATTGCTTCGCTTTCTCTCCCTAATGCACGATTTTGTACTATGTCTAGTTTATCTGCAACGCCACCCAGTTCCCCTTTGTCTAGAAAGCATTCTACGAGTTCGTCAAGCGATTCTTTAATTTCGAACATACT ] [-] EMBL SMAA28880 [ cgagCTGGAACGGAATCACCGAATTCTTCGCTTTCTCTCCCTAATGCACGNTCTTGTACTATGTCTAGTTTATCTGCAACGCCACCCAGTTCCCCTTTGTCTAGAAAGCATTCTA ] [-] EMBL CD061977 [ CGCTTTCTCTCCCTAATGCACGATCTTGTACTATGTCTAGTTTATCTGCAACGCCACCCAGTTCCCCTTTGTTTAGAAAGCATTCTACGAGTTCGTCAAGCGATTCTTTAATTTCGAACATACTCGAGTCCGATGGAATTCGTCTTCGCCACTGTACTCAGCCTAATCACGAAGCCTCCGAAACCTACTCGTGTTTCTCTTTCGAACATCTAGTACCTCGAGTCAGTGAAATACTTCGTGACATACCAGCGTCTCAGATCCGTGAAGCTCTTGTGAATACTCAAGGTGACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10217#0 CCCGGCCAANATTCGGCACGAGGT-CTTATCTGCAAC-GCCACCCAGTTCCCCTTTGTCT 58 consensus_10217#1 -GAGGATTGTATTACACCGAACACACATGTCTTCCATTGGAAGTCAATTCCACATAGCAA 59 ** *** * * * * *** * * * * ** **** * * * consensus_10217#0 AGAAAGCATTCTACGAGTTCGTCAAGCGATTCTTTAATTTCGAACATACTCGAGTCCGAT 118 consensus_10217#1 AGAAAAGACTCGTTCTGCCCCTGAATTCGTTCTTCGGT-------GTGCACGAG----AC 108 ***** * ** * * * ** ***** * * * **** * consensus_10217#0 GGAATTCGTCTTCGCCACTGTACTCAGCCTAATCACGAAGCCTCCGAAACCTACTCGTGT 178 consensus_10217#1 AATCATCAACCTGTCCACC-TACTTCCCGAAAAAGCACCGTCTGGTTTATCCGATTGCCT 167 ** * * **** **** * ** * * ** * * * * * consensus_10217#0 TTCTCTTTCGAACATCTAGTACCTCGAGTCAGTGAAATACTTCGTGACATACCAGCGTCT 238 consensus_10217#1 TTTCAAGTTTGATTACAAGATGTTTGGTTCGGTGGA-TAAAGTGCAACCTGT-GGCACTT 225 ** * * * ** * * ** *** * ** * ** * ** * consensus_10217#0 CGGATCCGTGAAGCTCTTGTGAATACTCAAGGTGACGTTGAATCAGCTATTGACTACCTT 298 consensus_10217#1 AAGGTTCATCGAATCTTCCCTA----TTAAATTAGTGGTTCATC--CTGTTTTTTGGTTT 279 * * * * * * * * ** * * * *** ** ** * ** consensus_10217#0 TTGGAAAATTCAAATGATTCGGATACTCAACGAGGCAGTAATCAGGTCGATCACACCATG 358 consensus_10217#1 ATGGAGCTTTTGTGGCAGTTCTTCACTCCTTTTACATATTATCATGTCAAATATTTAACT 339 **** ** * * **** * **** *** * * * consensus_10217#0 TCTGTTA------TGTCTCCCAGCA-GGTTCGCAGTTGCTGCCCCACAGTTCCTACCGAA 411 consensus_10217#1 CCGATTAGTCGGATGTCTAATGAAACAGATGAGGATTTCTGTGAAAGGGTTCGTTCCG-- 397 * *** ***** * * * ** *** * **** * *** consensus_10217#0 CTCTAGTTTACGTCAATTAAGCCTTACTGAACGTCGTGAGGCTCTTTTAAACCATGCGCG 471 consensus_10217#1 CTATTGCTTCCTCCCTCGGAGCTACACTCAGCCCAATAAA--TGCTGAACATCTGGCAGA 455 ** * * ** * * *** *** * * * * * * * * * ** consensus_10217#0 TCA-GCTGTATCGTTCTCGTCAACAAAAATCCGCTTAATTCATGGCGTAAGATCCCGCCG 530 consensus_10217#1 TTACACTGGAACGGAATCACCGATTGCTTCGCTTTCTCTCCCTAATGCACGATCTTGTAC 515 * * *** * ** ** * * * * * * * * * **** * consensus_10217#0 TTTAACAGTCCTTTTAAAGTTACTGAACTGTGATTCTTTTCATATATCTCTGACCGCCAA 590 consensus_10217#1 TATGTCTAGTTTATCTGCAACGCCACCCAGTTCCCCTTTGTCTAGAAAGCATTCTACGAG 575 * * * * * * * ** **** ** * * * * * consensus_10217#0 CTACTTTCTCGTAAACTTAAATGTTAATGAGTTAAAGCCATATCTGATAAATCCTGATTA 650 consensus_10217#1 TTCGTCAAGCGATTCTTTAATTTCGAACATACTCGAGTCCGATGGAATTCGTCTTCGCCA 635 * * ** **** * ** * ** * ** ** ** * * consensus_10217#0 CTTTAACTCTCAGTTTATTAGTTTTTCATCATTGTATAATAATAGCAAGATATCTTTCGA 710 consensus_10217#1 CTGTA---CTCAGCCTAATCACGAAGCCTC--CGAAACCTACTCGTGTT-TCTCTTTCGA 689 ** ** ***** ** * * ** * * ** * * * ******** consensus_10217#0 TTTTACATGTTTTTACATTACTTGACTTTGTGGTGATCTGTATAATTTTAAAAATTCCCA 770 consensus_10217#1 ACATCTAGTACCTCGAGTCAGTGAAATACTTCGTGACATAC-CAGCGTCTCAGATCCGTG 748 * * * * * * * * * **** * * * * ** * consensus_10217#0 TATTGTTGATTNAGNNACATNTATA--- 795 consensus_10217#1 AAGCTCTTGTGAATACTCAAGGTGACGT 776 * * * * ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||