cluster # 10231

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Schistosoma mansoni
cluster # 10231 cluster # 10231 Sequences # 14 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10231#0 length = 849 sequences # 13

consensus_10231#1 length = 155 sequences # 1

consensusID : consensus_10231#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 849
fasta sequence

                              [TAAGTGGCTACTTGACTCCCACCATTTTGATTGGCGTTTTGGTTTGGAGTAATGGCTAGGACGAAACAAACTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACCAAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGTTTTCAAAGCGCTGCAGTT-GGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTTGGTCTGTTCGAAGATACAAACCTTTGTGCGATTCATGCTAAAAGGGTTACAATTATGCCAAAGGATATCCAATTGGCTCGCCGTATCCGAGGAGAAAGAGCTTAAAATTTCGTTTTAATAAATGTTAAATTACATAAAAAAAAAAAAAAAAAAAACTCGTTTGAGCTTGGATAGTTGTCTCACAACGGCTTCAAGTGGTCCAACTCTAACTTTTTCTAATCAGTGCTTGATTACTGATCCAGTTGATCTAACACAAACAGTTCAGTGTGAAAATGGACAAATTGGTTGTATGTTCACTGTTGGATTGGTCGAACTAATCGGTTTTCGTGATCTCTAAACTGTTTGAAATTACATAAATTATTCACTCTTATGATATTTTTTTAAAAAAAAGTTTCCCTTGATCTGTTTATTTATCACGCAGTCAGCCTGTTTTACCTACGCGTGTATGAGAGAGATATATAGAGGTCGTTTTTGTCTCCAATTGGTTATACG]

[+] EMBL CD111103             [TAAGTGGCTACTTGACTCCCACCATTTTGATTGGCGTTTTGGTTTGGAGTAATGGCTAGGACGAAACAAACTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACCAAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGCTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGTTTTCAAAGCGCTGCAGTT GGTGCTCTTCAAGAGGCAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD136527             [                   CACCATTTTGATTGGCGTTTTGGTTTGGAGTAATGGCTAGGACGAAACAAACTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACCAAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD146011             [                      CATTTTGATTGGCGTTTTGGTTTGGAGTAATGGCTAGGACGAAACAAACTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACCAAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGTTTTCAAAGCGCTGCAGTT GGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTTGGTCTGTTCGAAGATACAAACCTTTGTGCGATTCATGCTAAAAGGGTTACAATTATGCCAAAGGATATCCAATTGGCT                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AI976848             [                                 GCGTTTTGGTTTGGAGTAATGGCTAGGACGAAACAAACTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACCAAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGTTTTCAAAGCGCTGCAGTT GGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTTGGTCTGTTCGAAGATACAAACCTTTGTGCGATTCATGCTAAAAGGGTTACAATTATGCCAAAGGATATCCAATTGGCTCGCCGTATCCGAGGAGAAAGAGCTTAAAATTTCGTTTTAATAAATGT                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AA999409             [                                     TTTGGTTTGGAGTAATGGCTAGGACGAAACAAACTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACCAAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGTTTTCAAAGCGCTGCAGTTGGGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTTGGTCTGTTCGAAGATA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD145949             [                                                                      CTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACCAAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGTTTTCAAAGCGCTGCAGTT GGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTTGGTCTGTTCGAAGATACAAACCTTTGTGCGATTCATGCTAAAAGGGTTACAATTATGCCAAAGGATATCCAACTGGCT                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AW017430             [                                                                       TGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACCAAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGTTTTCAAAGCGCTGCAATT GGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTTGGTCTGTTCGAAGATACAAACCTTTGTGCGATTCATGCTAAAAGGGTTACAATTATGCCAAAGGATATCCAATTGGCTCGCCGTATCCGAGGAGAAAGAGCTTAAAATTTCGTTNTAATAAATGT                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD145907             [                                                                                                                 TGCAACCAAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGTTTTCAAAGCGCTGCAGTT GGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTTGGTCTGTTCGAAGATACAAACCTTTGTGCGATTCATGCTAAAAGGGTTACAATTACGCCAAAGGATATCCAATTGGCT                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD145886             [                                                                                                                         AAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGTTTTCAAAGCGCTGCAGTT GGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTTGGTCTGTTCGAAGATACAAACCTTTGTGCGATTCATGCTAAAAGGGTTACAATTATGCCAAAGGATATCCAATTGGCT                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD145906             [                                                                                                                                        CTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGTTTTCAAAGCGCTGCAGTT GGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTTGGTCTGTTCGAAGATACAAACCTTTGTGCGATTCATGCTAAAAGGGTTACAATTATGCCAAAGGATATCCAATTGGCT                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD192463             [                                                                                                                                          GCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGTTTTCAAAGCGCTGCAGTT GGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTCGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD139065             [                                                                                                                                          GCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGTCCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATACGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTACGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AI739734             [                                                                                                                                                                                                                                                                                                                                                                                                                     TACAATTATGCCANAGGATATCCAATTGGCTCGCCGTATCCGAGGAGAAAGAGCTTAAAATTTCGTTTTAATAAATGTTAAATTACATAAAAAAAAAAAAAAAAAAAACTCGTTTGAGCTTGGATAGTTGTCTCACAACGGCTTCAAGTGGTCCAACTCTAACTTTTTCTAATCAGTGCTTGATTACTGATCCAGTTGATCTAACACAAACAGTTCAGTGTGAAAATGGACAAATTGGTTGTATGTTCACTGTTGGATTGGTCGAACTAATCGGTTTTCGTGATCTCTAAACTGTTTGAAATTACATAAATTATTCACTCTTATGATATTTTTTTAAAAAAAAGTTTCCCTTGATCTGTTTATTTATCACGCAGTCAGCCTGTTTTACCTACGCGTGTATGAGAGAGATATATAGAGGTCGTTTTTGTCTCCAATTGGTTATACG]




>consensus_10231#0
TAAGTGGCTACTTGACTCCCACCATTTTGATTGGCGTTTTGGTTTGGAGTAATGGCTAGG
ACGAAACAAACTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACC
AAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGT
CCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATA
CGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTA
CGTTTTCAAAGCGCTGCAGTTGGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTTGGT
CTGTTCGAAGATACAAACCTTTGTGCGATTCATGCTAAAAGGGTTACAATTATGCCAAAG
GATATCCAATTGGCTCGCCGTATCCGAGGAGAAAGAGCTTAAAATTTCGTTTTAATAAAT
GTTAAATTACATAAAAAAAAAAAAAAAAAAAACTCGTTTGAGCTTGGATAGTTGTCTCAC
AACGGCTTCAAGTGGTCCAACTCTAACTTTTTCTAATCAGTGCTTGATTACTGATCCAGT
TGATCTAACACAAACAGTTCAGTGTGAAAATGGACAAATTGGTTGTATGTTCACTGTTGG
ATTGGTCGAACTAATCGGTTTTCGTGATCTCTAAACTGTTTGAAATTACATAAATTATTC
ACTCTTATGATATTTTTTTAAAAAAAAGTTTCCCTTGATCTGTTTATTTATCACGCAGTC
AGCCTGTTTTACCTACGCGTGTATGAGAGAGATATATAGAGGTCGTTTTTGTCTCCAATT
GGTTATACG

consensusID : consensus_10231#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 155
fasta sequence

                              [TTTTTTTTTTTTTTTTGATTGGCGTTTTGGTTTGGACTAATGGCTACGACGAAACAAACTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACCAAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAACC]

[+] EMBL AI395828             [TTTTTTTTTTTTTTTTGATTGGCGTTTTGGTTTGGACTAATGGCTACGACGAAACAAACTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACCAAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAACC]




>consensus_10231#1
TTTTTTTTTTTTTTTTGATTGGCGTTTTGGTTTGGACTAATGGCTACGACGAAACAAACT
GCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACCAAAGCTGCACGC
AAGTCTGCACCATCAACTGGTGGTGTAAAGAAACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10231#0      TAAGTGGCTACTTGACTCCCACCATTTTGATTGGCGTTTTGGTTTGGAGTAATGGCTAGG 60
consensus_10231#1      ------------TTTTTTTTTTTTTTTTGATTGGCGTTTTGGTTTGGACTAATGGCTACG 48
                                   *   *       ************************ ********* *

consensus_10231#0      ACGAAACAAACTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACC 120
consensus_10231#1      ACGAAACAAACTGCAAGGAAATCAACTGGTGGCAAAGCACCAAGGAAACAACTTGCAACC 108
                       ************************************************************

consensus_10231#0      AAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAGCCTCACCGTTATCGT 180
consensus_10231#1      AAAGCTGCACGCAAGTCTGCACCATCAACTGGTGGTGTAAAGAAACC------------- 155
                       ******************************************** **             

consensus_10231#0      CCAGGGACTGTTGCACTGCGAGAAATCCGCCGTTATCAAAAGTCTACTGAGTTACTGATA 240
consensus_10231#1      ------------------------------------------------------------
                                                                                   

consensus_10231#0      CGAAAGTTGCCCTTCCAAAGATTAGTGCGCGAGATCGCTCAAGATTTTAAGACGGACTTA 300
consensus_10231#1      ------------------------------------------------------------
                                                                                   

consensus_10231#0      CGTTTTCAAAGCGCTGCAGTTGGTGCTCTTCAAGAGGCAAGCGAGGCATATCTAGTTGGT 360
consensus_10231#1      ------------------------------------------------------------
                                                                                   

consensus_10231#0      CTGTTCGAAGATACAAACCTTTGTGCGATTCATGCTAAAAGGGTTACAATTATGCCAAAG 420
consensus_10231#1      ------------------------------------------------------------
                                                                                   

consensus_10231#0      GATATCCAATTGGCTCGCCGTATCCGAGGAGAAAGAGCTTAAAATTTCGTTTTAATAAAT 480
consensus_10231#1      ------------------------------------------------------------
                                                                                   

consensus_10231#0      GTTAAATTACATAAAAAAAAAAAAAAAAAAAACTCGTTTGAGCTTGGATAGTTGTCTCAC 540
consensus_10231#1      ------------------------------------------------------------
                                                                                   

consensus_10231#0      AACGGCTTCAAGTGGTCCAACTCTAACTTTTTCTAATCAGTGCTTGATTACTGATCCAGT 600
consensus_10231#1      ------------------------------------------------------------
                                                                                   

consensus_10231#0      TGATCTAACACAAACAGTTCAGTGTGAAAATGGACAAATTGGTTGTATGTTCACTGTTGG 660
consensus_10231#1      ------------------------------------------------------------
                                                                                   

consensus_10231#0      ATTGGTCGAACTAATCGGTTTTCGTGATCTCTAAACTGTTTGAAATTACATAAATTATTC 720
consensus_10231#1      ------------------------------------------------------------
                                                                                   

consensus_10231#0      ACTCTTATGATATTTTTTTAAAAAAAAGTTTCCCTTGATCTGTTTATTTATCACGCAGTC 780
consensus_10231#1      ------------------------------------------------------------
                                                                                   

consensus_10231#0      AGCCTGTTTTACCTACGCGTGTATGAGAGAGATATATAGAGGTCGTTTTTGTCTCCAATT 840
consensus_10231#1      ------------------------------------------------------------
                                                                                   

consensus_10231#0      GGTTATACG 849
consensus_10231#1      ---------