These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10232#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 802 fasta sequence [CTTCCCATTGGACCCATTAGTGAGGCACCAAGCCCCATGCTTCTCGTAGGGGAAGTTGGTGCACTTGGATAAGCACCACGTCCTCGACCTACAGATCCAGGAATGTGATTAGCTGCAGTTGTGGCTGTCTGAGAACTAGAGAACTGTTCAGCCATGGTAGGGGCTGTAGATCCGTACCTCATATCATAGTTTGCAGGACCTGTAGAACTAAAATCTTGGGGTTGGGTTGAATAACTATGCCCCGTAGTTTCAATACTGCTGCCTCCACTGCACAGAATATATCCGGAAAAATGTCTTCAAAAGAACACCAGAAAATACTTCTAGTCATAGATGACACGCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCATCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCCTGTATGAATACTTTGCACGCGATATACAATATGAAAAATCGTCCATGGCTTTTCGCTCATTTATTAATGATCCGAAATCGATTGGGCAAAGAAAATTTTCCACTTATTTCACAAACCTATCATACAAGTTATAAAGAAATGGCTGTAGCACCAGCGTTTCCAGTTATTGTAAAAGTCGGAGTAGGTCATCGTGGCGAGGGCAA] [+] EMBL CD201524 [CTTCCCATTGGACCCATTAGTGAGGCACCAAGCCCCATGCTTCTCGTAGGGGAAGTTGGTGCACTTGGATAAGCACCACGTCCTCGACCTACAGATCCAGGAATGTGATTAGCTGCAGTTGTGGCTGTCTGAGAACTAGAGAACTGTTCAGCCATGGTAGGGGCTGTAGATCCGTACCTCATATCATAGTTTGCAGGACCTGTAGAACTAAAATCTTGGGGTTGGGTTGAATAACTATGCCCCGTAGTTTCAATACTGCTGCCTCCACTGCACAGAATATATCCGGAAAAATGTCTTCAAAAGAACACCAGAAAATACTTCTAGTCATAGATGACACGCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACA ] [-] EMBL CD179789 [ AGCGCCACGTCCTCGACATTCAGATCCAGGAATGTGATTAGCTGCAGTTGTGTCTGTCTGAGAACTAGAGAACTGTTCAGCCATGGTAGGGGCTGTAGATCCGTACCTCATATCATAGTGTGCAGGACCTGTAG ] [+] EMBL CD091803 [ CGCAAACTGATTGGTGTAAGTATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCATCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGCTACACCCTGTATGAATACTTTGCACGCGATATGCAATATGAAAAATCGTCCATGGCTTTTCGCTCATTTATTAATGATCCGAAATCGATTGGGCAAAGAAAATTTTCCACTTATTTCACAAACCTATCATACAAGTTATAAAGAAATGGCTGTAGCACCAGCGTTTCCAGTTATTGTAAAAGTCGGAGTAGGTCATCGTGGCGAGGGCA ] [+] EMBL CD091808 [ CGCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCATCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCCTGTATGAATACTTTGCACGCGATATACAATATGAAAAATCGTCCATGGCTTTTCGCTCATTTATTAATGATCCGAAATCGATTGGGCAAAGAAAATTTTCCACTTATTTCACAAACCTATCATACAAGTTATAAAGAAATGGCTGTAGCACCAGCGTTTCCAGTTATTGTAAAAGTCGGAGTAGGTCATCGTGGCGAGGGCA ] [+] EMBL CD091838 [ CGCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCATCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCCTGTATGAATACTTTGCACGCGATATACAATATGAAAAATCGTCCATGGCTTTTCGCTCATTTATTAATGATCCGAAATCGATTGGGCAAAGAAAATTTTCCACTTATTTCACAAACCTATCATACAAGTTATAAAGAAATGGCTGTAGCACCAGCGTTTCCAGTTATTGTAAAAGTCGGAGTAGGTCATCGTGGCGAGGGCA ] [+] EMBL CD091843 [ CGCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCATCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCCTGTATGAATACTTTGCACGCGATATACAATATGAAAAATCGTCCATGGCTTTTCGCTCATTTATTAATGATCCGAAATCGATTGGGCAAAGAAAATTTTCCACTTATTTCACAAACCTATCATACAAGTTATAAAGAAATGGCTGTAGCACCAGCGTTTCCAGTTATTGTAAAAGTCGGAGTAGGTCATCGTGGCGAGGGCA ] [+] EMBL CD091895 [ CGCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCATCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCCTGTATGAATACTTTGCACGCGATATACAATATGAAAAATCGTCCATGGCTTTTCGCTCATTTATTAATGATCCGAAATCGATTGGGCAAAGACTCTTTTCCACTTATTTCACAAACCTATCATACAAGTTATAAAGAAATGGCTGTAGCACCAGCGTTTCCAGTTATTGTAAAAGTCGGAGTAGGTCATCGTGGCGAGGGCA ] [-] EMBL CD091868 [ GCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCATCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCCTGTATGAATACTTTGCACGCGATATACAATATGAAAAATCGTCCATGGCTTTTCGCTCATTTATTAATGATCCGAAATCGATTGGGCAAAGAAAATTTTCCACTTATTTCACAAACCTATCATACAAGTTATAAAGAAATGGCTGTAGCACCAGCGTTTCCAGTTATTGTAAAAGTCGGAGTAGGTCATCGTGGCGAGGGCAA] [-] EMBL CD091888 [ GCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCATCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCCTGTATGAATACTTTGCACGCGATATACAATATGAAAAATCGTCCATGGCTTTTCGCTCATTTATTAATGATCCGAAATCGATTGGGCAAAGAAAATTTTCCACTTATTTCACAAACCTATCATACAAGTTATAAAGAAATGGCTGTAGCACCAGCGTTTCCAGTTATTGTAAAAGTCGGAGTAGGTCATCGTGGCGAGGGCAA] [-] EMBL CD091815 [ GCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCATCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAACTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCCTGTATGAATACTTTGCACGCGATATACAATATGAAAAATCGTCCATGGCTTTTCGCTCATTTATTAATGATCCGAAATCGATTGGGCAAAGAAAATTTTCCACTTATTTCACAAACCTATCATACAAGTTATAAAGAAATGGCTGTAGCACCAGCGTTTCCAGTTATTGTAAAAGTCGGAGTAGGTCATCGTGGCGAGGGCAA] [-] EMBL CD091866 [ GCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAGTAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCATCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCCTGTATGAATACTTTGCACGCGATATACAATATGAAAAATCGTCCATGGCTTTTCGCTCATTTATTAATGATCCGAAATCGATTGGGCAAAGAAAATTTTCCACTTATTTCACAAACCTATCATACAAGTTATAAAGAAATGGCTGTAGCACCAGCGTTTCCAGTTATTGTAAAAGTCGGAGTAGGTCATCGTGGCGAGGGCAA] consensusID : consensus_10232#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 379 fasta sequence [CCAATGGGAAGTTTAACCGGTCAGATATCAAACACACTCATGCGTAGTTTCAATACTGCTGCCTCCACTGCACAGAATATATCCGGAAAAATGTCTTCAAAAGAACACCAGAAAATACTTCTAGTCATAGATGACACGCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCGTCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGAC] [-] EMBL CD087654 [CCAATGGGAAGTTTAACCGGTCAGATATCAAACACACTCATGCGTAGTTTCAATACTGCTGCCTCCACTGCACAGAATATATCCGGAAAAATGTCTTCAAAAGAACACCAGAAAATACTTCTAGTCATAGATGACACGCAAACTGATTGGTGTAAATATTTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCAGAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCGTCGTTAGCATCTATCCTGATCAAATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGAC] consensusID : consensus_10232#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence [ACTCAAAATCTATCCCACAGGTTCAGTTAAATTTACTAATTAAATATGTGTAAAGGTTAACACTTAATTCTCGTTTCAGCTTAATCGTTTCATTATCGACGTGTACTCTTTCCACATTCAACTGTAAAGTGTAACAACTTGAAGTGAAATAAAACTTTGCCAGGTCTATTAATAATAATCCCCTTGAAATAAAACTTCTCGAGTAAAAGTCAACATTTTATTTCGTTTTAAATTAGATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCCTGTATGAATACTTTGCACGCGATATACAATATGAA] [+] EMBL CD165114 [ACTCAAAATCTATCCCACAGGTTCAGTTAAATTTACTAATTAAATATGTGTAAAGGTTAACACTTAATTCTCGTTTCAGCTTAATCGTTTCATTATCGACGTGTACTCTTTCCACATTCAACTGTAAAGTGTAACAACTTGAAGTGAAATAAAACTTTGCCAGGTCTATTAATAATAATCCCCTTGAAATAAAACTTCTCGAGTAAAAGTCAACATTTTATTTCGTTTTAAATTAGATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCAAGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCCTGTATGAATACTTTGCACGCGATATACAATATGAA] consensusID : consensus_10232#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 154 fasta sequence [GAACTGTTCAGCCATGGTAGGGGCTGTAGATCCGTACCTCATATCATAGTTTGCAGGACCTGTAGAACTAAAATCTTGGGGTTGGTTTGAATAACTATGCCCTGTAGTTTGAATATTAGAGCTTTGCTGCTGATACTGTTGATGGGATTGTCCA] [-] EMBL CD095538 [GAACTGTTCAGCCATGGTAGGGGCTGTAGATCCGTACCTCATATCATAGTTTGCAGGACCTGTAGAACTAAAATCTTGGGGTTGGTTTGAATAACTATGCCCTGTAGTTTGAATATTAGAGCTTTGCTGCTGATACTGTTGATGGGATTGTCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10232#0 CTTCCCATTGGACCCATTAGTGAGGCACCAAGCCCCATGCTTCTCGTAGGGGAAGTTGGT 60 consensus_10232#1 ------------------------------------------------------------ consensus_10232#3 ------------------------------------------------------------ consensus_10232#2 ------------------------------------------------------------ consensus_10232#0 GCACTTGGATAAGCACCACGTCCTCGACCTACAGATCCAGGAATGTGATTAGCTGCAGTT 120 consensus_10232#1 ------------------------------------------------------------ consensus_10232#3 ------------------------------------------------------------ consensus_10232#2 ------------------------------------------------------------ consensus_10232#0 GTGGCTGTCTGAGAACTAGAGAACTGTTCAGCCATGGTAGGGGCTGTAGATCCGTACCTC 180 consensus_10232#1 ------------------------------------------------------------ consensus_10232#3 ------------------------------------------------------------ consensus_10232#2 ------------------------------------------------------------ consensus_10232#0 ATATCATAGTTTGCAGGACCTGTAGAACTAAAATCTTGGGGTTGGGT-TGAATAACTATG 239 consensus_10232#1 ------------------CCAATGGG---AAGTTTAACCGGTCAGATATCAAACACACTC 39 consensus_10232#3 --------------------------------------------------GAAC-TGTTC 9 consensus_10232#2 ------------------------------------------------------------ consensus_10232#0 CCCCGTAGTTTCAATACTGCTGCCTCCACTGCACAGAATATATCCGGAAAAATGTCTTCA 299 consensus_10232#1 ATGCGTAGTTTCAATACTGCTGCCTCCACTGCACAGAATATATCCGGAAAAATGTCTTCA 99 consensus_10232#3 AGCCATGGTA--GGGGCTGTAGA-TCCGTACCTCATATCATAGTTTGCAGGACCTGTAGA 66 consensus_10232#2 ACTCAAAATCT--ATCCCACAGGTTCAGTTAAATTTACTA-ATT---AAATATGTGTAAA 54 * * * * ** * * * * * * * * consensus_10232#0 AAAGAACACCAGAAAATACTTCTAGTCATAGATGACACGCAAACTGATTGGTGTAAATAT 359 consensus_10232#1 AAAGAACACCAGAAAATACTTCTAGTCATAGATGACACGCAAACTGATTGGTGTAAATAT 159 consensus_10232#3 ACTAAAATCTTGGGGTTGGTTTGAATAACT-ATGCCCTGTAGTTTGAATATTAGAGCTTT 125 consensus_10232#2 GGTTAACACTTAATTCTCGTTTCAGC--TTAATCGTTTCATTATCGAC--GTGTACTCTT 110 ** * * ** * ** ** * * * consensus_10232#0 TTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCA 419 consensus_10232#1 TTCAGAGGCAAGAAGCTGATGGGAGATTGGGAAATAAAAGTAGAACAAGCTCAATTCTCA 219 consensus_10232#3 GCTGCTGATAC--TGTTGATGGGA--TTGTCCA--------------------------- 154 consensus_10232#2 TCCACATTCAA----CTGTAAAGTG--TAACAACTTGAAGTGAAATAAAACT--TTGCCA 162 * ** * * * consensus_10232#0 GAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCATCGTTAGCATCTATCCTGATCAA 479 consensus_10232#1 GAAATTTCATTGACAGCCTATAGTGAACAAGGTTGCGTCGTTAGCATCTATCCTGATCAA 279 consensus_10232#3 ------------------------------------------------------------ consensus_10232#2 GGTCTATTAATAATAATCCCCTTGAAATAAAACTTCTCGAGTAAAAGTCAACAT--TTTA 220 consensus_10232#0 ATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCA 539 consensus_10232#1 ATACGTTCAAAACCTCTAAAATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCA 339 consensus_10232#3 ------------------------------------------------------------ consensus_10232#2 TTTCGTTTTAAATT----AGATCATTTAAACCTGACTTCGTCCTAGTACGACAACATCCA 276 consensus_10232#0 AGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCC 599 consensus_10232#1 AGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGAC-------------------- 379 consensus_10232#3 ------------------------------------------------------------ consensus_10232#2 AGTGATTTGAAGGAGAATTGGCAACCTATACTCACTGGACTAATGTATGGAGGTACACCC 336 consensus_10232#0 TGTATGAATACTTTGCACGCGATATACAATATGAAAAATCGTCCATGGCTTTTCGCTCAT 659 consensus_10232#1 ------------------------------------------------------------ consensus_10232#3 ------------------------------------------------------------ consensus_10232#2 TGTATGAATACTTTGCACGCGATATACAATATGAA------------------------- 371 consensus_10232#0 TTATTAATGATCCGAAATCGATTGGGCAAAGAAAATTTTCCACTTATTTCACAAACCTAT 719 consensus_10232#1 ------------------------------------------------------------ consensus_10232#3 ------------------------------------------------------------ consensus_10232#2 ------------------------------------------------------------ consensus_10232#0 CATACAAGTTATAAAGAAATGGCTGTAGCACCAGCGTTTCCAGTTATTGTAAAAGTCGGA 779 consensus_10232#1 ------------------------------------------------------------ consensus_10232#3 ------------------------------------------------------------ consensus_10232#2 ------------------------------------------------------------ consensus_10232#0 GTAGGTCATCGTGGCGAGGGCAA 802 consensus_10232#1 ----------------------- consensus_10232#3 ----------------------- consensus_10232#2 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||