These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10234#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 636 fasta sequence [AAAAAGGCACTCACCAGCCCTGTAATTTCTAATATTTACATGATTTTCTACCAACCAACGAAAATTTTGTTCATTTGGTTTTCACATGCGTCATTGTTAAACTATGTAACCAAGTTGGAGACCTCAAGTAAGGTAATAAACCTTGTTAACAATTGCAAATCTCCTTAATATTGAGTGATTCGACTTAGATGTTCGTGAAAAAGCACTAACCTTGGATCCAGACTTGTATGCAAAAACACTATACATCTACTGTTTTTAAGAGTCGCTGAATTTTTCAGTATATTTGTTCATTTCCGATAGATTAGATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCTTATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGGTAAGTATTGTTCACTACGAAATGTTCTGTTTTTAGAATGGTCAAACTGTACAAAAAC] [-] EMBL CD169282 [AAAAAGGCACTCACCAGCCCTGTAATTTCTAATATTTACATGATTTTCTACCAACCAACGAAAATTTTGTTCATTTGGTTTTCACATGCGTCATTGTTAAACTATGTAACCAAGTTGGAGACCTCAAGTAAGGTAATAAACCTTGTTAACAATTGCAAATCTCCTTAATATTGAGTGATTCGACTTAGATGTTCGTGAAAAAGCACTAACCTTGGATCCAGACTTGTATGCAAAAACACTATACATCTACTGTTTTTAAGAGTCGCTGAATTTTTCAGTATATTTGTTCATTTCCGATAGATTAGATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCTTATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTT ] [-] EMBL CD169237 [AAAAAGGCACTCACCAGCCCTGTAATTTCTAATATTTACATGATTTTCTACCAACCAACGAAAATTTTGTTCATTTGGTTTTCACATGCGTCATTGTTAAACTATGTAACCAAGTTGGAGACCTCAAGTAAGGTAATAAACCTTGTTAACAATTGCAAATCTCCTTAATATTGAGTGATTCGACTTAGATGTTCGTGAAAAAGCACTAACCTTGGATCCAGACTTGTATGCAAAAACACTATACATCTACTGTTTTTAAGAGTCGCTGAATTTTTCAGTATATTTGTTCATTTCCGATAGATTAGATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCTTATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTT ] [+] EMBL CD138950 [ CCATAGTTGCCTTATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGGTAAGTATTGTTCACTACGAAATGTTCTGTTTTTAGAATGGTCAAACTGTACAAAAAC] consensusID : consensus_10234#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 538 fasta sequence [AGGGCTACTTTGCAGGTTTGGTTCTCCTATGTCGTGATTAGATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCTTATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGAATGGTCAAACTGTACAAAAACATACTACTGGGCAGCGATATACATTTGCAAGACGGACTTTCATAAGGCACTAGAATGCAACAAAAAATACCTACAAGACCCTGAGTTTCTCGAAGAGACGAAGGCTT-TATATCTGAAGATGCGTTCGAACTACAGGAGGACGGGGCTGGAGCAACGCGTTGTACGAACCGCCAAATAATTGTAGTCTCAAATAGAAGTTTCA] [+] EMBL CD079779 [AGGGCTACTTTGCAGGTTTGGTTCTCCTATGTCGTGATTAGATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCTTATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGAATGGTCAAACTGTACAAAAACATACTACTGGGCAGCGATATACATTTGCAAGACGGACTTTCATAAGGCACTAGAATGCAACAAAAAATACCTACAAGACCCTGAGTTTCTCGAAGAGACGAAGGCTT TATATCTGAAGATGCGTTCGAACTACAGGAGGACGGGGCTGGAGCAACGCGTTGTACGAACCGACAAATAATTGTAGTCTCAAATAGAAGTTTC ] [+] EMBL CD079961 [ gtTACTTTGCAGGTTTGGTTCTCCTATGTCGTGATTAGATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCTTATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGAATGGTCAAACTGTACAAAAACATACTACTGGGCAGCGATATACATTTGCAAGACGGACTTTCATAAGGCACTAGAATGCAACAAAAAATACCTACAAGACCCTGAGTTTCTCGAAGAGACGAAGGCTN TATATCTGAAGATGCGTTCGAACTA ] [-] EMBL CD194291 [ TTTGCAGGTTTGGTTCTCCTATGTCGT GATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCTTATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGAATGGTCAAACTGTACAAAAACATACTACTGGGC ] [-] EMBL CD074037 [ CAAACTGCTGCAGTTTCCACCCATAGTTCCCTTATATCCCCCAATTTTCAGGAAGCAAACCAATAGCCGCCTGCTGAGAATGGGCCCCCTTTTCTCCAAACGTCAAAGTGCAGAATTCCCCTTGATCCCATTTGAAAAAGTAAGCGGCCCTTTGGGCCTAGGTGCCCCTGAAAGTAACGAAATCCCGAAGGTTGAAGAAGAGAGCTTTATCCCTGCGCTTATGCCCGATAGATTGAGAACTAACCAATGTGCGGAGCTTTGGGACGAATGGTCAAACTGTACAAAAACATACTATTGGGCAGCGATATACATTTGCAAGACGGACTTTCATAAGGCATTAGAATGCACCAAAAAATCCCTCCAAGCCCCTGAGTTTTTCGAAAAGACGAAGGCTT TATATTTGAAAATGCGTTCGAACTACAGGAGGACGGGGCTGGAGCAACGCGTTGTACGAACCGCCAAATAATTGTAGTCTCAAATAGAAGTTTCA] [-] EMBL CD132130 [ TTCCAACAATAGTTGCCTNATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGAATGGTCAAACTGTACAAAAACATACTACTGGGCAGCGATATACATTTGCAAGACGGACTTTCATAAGGCACTAGAATGCAACAAAAAATACCTACAAGACCCTGAGTTTCTCGAAGAGACGAAGGCTTATAT TCTGAAGATGCG ] [+] EMBL CD139005 [ CCATAGTTGCCTTATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGAATGGTCAAACTGCACAAAAAC ] [+] EMBL CD138986 [ CCATAGTTGCCTTATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGAATGGTCAAACTGTACAAAAAC ] [-] EMBL CD074155 [ TTTTTTCCAAAGGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAAAAGTAAACGGCCCTTTGGGCCTAGGTGACCCTGAAAGTAACGAAATCCCGAAGGTTGAAAAAAAGAGCTTTATCCCTGCGCTTATGCCCGATAGATTGAGAACTAACCAATGTGCGGAGCTTTGGGAAGAATGGTCAAACTGTACAAAAACATATTTTTGGGCAGCGATATACATTTGCAAGACGGGCTTTCATAAGGCGGTAGAATGCAACAAAAAATACCTCCAAGACCCTGAGTTTTTTGAAAAAACGAAGGCTT TATATTTGAAAATGCGTTCGAAATACAGGAGGACGGGGCTGGAGCAACGCGTTGTACGAACCGCCAAATAATTGTAGTCTCAAATAAAAGTTTCA] consensusID : consensus_10234#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 339 fasta sequence [TACTCTTGTGATTTGTTGCATGATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCATATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAGAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGAATGGTCGAAACTGTACATAAAACATACTACTGCGAGGTACGTC] [-] EMBL CD119538 [TACTCTTGTGATTTGTTGCATGATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCATATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAGAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGA ] [+] EMBL CD180503 [ TGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGAATGGTCGAAACTGTACATAAAACATACTACTGCGAGGTACGTC] consensusID : consensus_10234#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 317 fasta sequence [GATGGAATTCTATATCAATTATTTGTATTAGGTGTTATTTTAGCCTGTTTGATGTAAAGTAATGTGTAATTTAGCATGTTAAGCTGGTTGCTAAAACTTTGACACTTAAACCTTTCTGCAGGTGACCCTAAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGGTAAGTATTGTTCACTACGAAATGTTCTGTTTTTAGAATGGTCAAACTGTACAANAACATACTACTGGGCAGCGATATACATTTTGCAGAC] [+] EMBL CD144322 [GATGGAATTCTATATCAATTATTTGTATTAGGTGTTATTTTAGCCTGTTTGATGTAAAGTAATGTGTAATTTAGCATGTTAAGCTGGTTGCTAAAACTTTGACACTTAAACCTTTCTGCAGGTGACCCTAAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGGTAAGTATTGTTCACTACGAAATGTTCTGTTTTTAGAATGGTCAAACTGTACAANAACATACTACTGGGCAGCGATATACATTTTGCAGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10234#1 ------------------------------------------------------------ consensus_10234#2 ------------------------------------------------------------ consensus_10234#0 AAAAAGGCACTCACCAGCCCTGTAATTTCTAATATTTACATGATTTTCTACCAACCAACG 60 consensus_10234#3 ------------------------------------------------------------ consensus_10234#1 ------------------------------------------------------------ consensus_10234#2 ------------------------------------------------------------ consensus_10234#0 AAAATTTTGTTCATTTGGTTTTCACATGCGTCATTGTTAAACTATGTAACCAAGTTGGAG 120 consensus_10234#3 ------------------------------------------------------------ consensus_10234#1 ------------------------------------------------------------ consensus_10234#2 ------------------------------------------------------------ consensus_10234#0 ACCTCAAGTAAGGTAATAAACCTTGTTAACAATTGCAAATCTCCTTAATATTGAGTGATT 180 consensus_10234#3 ------------------------------------------------------------ consensus_10234#1 ------------------------------------------------------------ consensus_10234#2 ------------------------------------------------------------ consensus_10234#0 CGACTTAGATGTTCGTGAAAAAGCACTAACCTTGGATCCAGACTTGTATGCAAAAACACT 240 consensus_10234#3 ------------------------------------------------------------ consensus_10234#1 -----------------------AGGGCTACTTTGCAGGTTTGGTTCTCCTATGTCGT-G 36 consensus_10234#2 ------------------------------------------TACTCTTGTGATTTGT-T 17 consensus_10234#0 ATACATCTACTGTTTTTAAGAGTCGCTGAATTTTTCAGTATATTTGTTCATTTCCGATAG 300 consensus_10234#3 ------------------------------------------------------------ consensus_10234#1 ATTAGATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCTTATATCCCACAATTCT 96 consensus_10234#2 GCATGATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCATATATCCCACAATTCT 77 consensus_10234#0 ATTAGATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCTTATATCCCACAATTCT 360 consensus_10234#3 ---------------------------------GATGGA-ATTCTATATCA-ATTATTTG 25 ** * ****** * *** consensus_10234#1 CAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAG 156 consensus_10234#2 CAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAG 137 consensus_10234#0 CAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAG 420 consensus_10234#3 TATTAGGTGTTATTTTAGCCTGTT--TGATGTAAAGTAATGTGTAAT-------TTAGCA 76 * * * * *** * * *** * * * * * * * consensus_10234#1 TGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCC 216 consensus_10234#2 TGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCC 197 consensus_10234#0 TGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCC 480 consensus_10234#3 TGTTAAGCTGG--TTGCTAAAACTTTGACACTTAAAC----CTTTCTGC--AGGTGACCC 128 ** * * * *** * * * * * *** * **** ** ********* consensus_10234#1 TGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGA 276 consensus_10234#2 TGAGAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGA 257 consensus_10234#0 TGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGA 540 consensus_10234#3 TAAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGA 188 * * ******************************************************** consensus_10234#1 TAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGAATGGTC-AAACTGTACA-AAA 334 consensus_10234#2 TAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGAATGGTCGAAACTGTACATAAA 317 consensus_10234#0 TAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGGTAAGTA-TTGTTCACTACGAA 599 consensus_10234#3 TAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGGTAAGTA-TTGTTCACTACGAA 247 ************************************** ** * * ** consensus_10234#1 ACATACTACTGG-GCAGCGATATACATTTGCAAGACGGACTTTCATAAGGCACTAGAATG 393 consensus_10234#2 ACATACTACTG------CGAGGTACGTC-------------------------------- 339 consensus_10234#0 ATGTTCTGTTTTTAGAATGGTCAAACTGTACAAAAAC----------------------- 636 consensus_10234#3 ATGTTCTGTTTTTAGAATGGTCAAACTGTACAANAACA--TACTACTGGGCAGCGATATA 305 * * ** * * * * consensus_10234#1 CAACAAAAAATACCTACAAGACCCTGAGTTTCTCGAAGAGACGAAGGCTTTATATCTGAA 453 consensus_10234#2 ------------------------------------------------------------ consensus_10234#0 ------------------------------------------------------------ consensus_10234#3 CATTTTGCAGAC------------------------------------------------ 317 consensus_10234#1 GATGCGTTCGAACTACAGGAGGACGGGGCTGGAGCAACGCGTTGTACGAACCGCCAAATA 513 consensus_10234#2 ------------------------------------------------------------ consensus_10234#0 ------------------------------------------------------------ consensus_10234#3 ------------------------------------------------------------ consensus_10234#1 ATTGTAGTCTCAAATAGAAGTTTCA 538 consensus_10234#2 ------------------------- consensus_10234#0 ------------------------- consensus_10234#3 ------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||