These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10245#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 986 fasta sequence [AAGGTGAACGATTAGGTGTGGTTTAAGTAACAGTATTTGCTCCAACAACAATGTTAATCCAAGCCCTTGCATCCAGCCCACTGTGTTGAATAGTAAACGCGGTTTTGGTTCAGGTAAATTAACGTAAGCATCATATACAAAGCTGAGGCATTTCAAGTAGAAACTGGGATCATCAGAGGGTGTAATGCATCCGACAAAACACTGACGAAGAATATTTACATTGGTGGATAAAGTATGAGTATATGGAGGGCCAAACAATGGCAGTTTGACCAGACACAAACTTATAATTCCGTTTGGAGTAAATTCAGGTTGACCAATATCACAATCAAGAACTGCAACACACTTTTCTTTAAGTGGATATTCCACATCTGTAAGGATTTTGTTTGATAAAAAACGCAGTAGAGATGATTTTCCA-GCACCCTTCGGACCACAAATTAATAACTTCCTCACACAATCATCACGAGGAGCAACTACGGGGACAGAGCTGAGTTTCAGTGAAATATGTGAAACTTCTGGTGCAACCTGATATCCAAGGCTTCCATCATGCTCGAGGAAAGTAAATCCAAGTAATTTAGCTAAGGAGGCATTTGGTACAGTGCCTTCTGATGGTAGATGAAACAAAAAACGAAACCGCTTAATCTCAGAAATTGAGTCCAGGACTCGACTCTGGCAAGGACTGAAATGTAAAACGGTCACATCTTCCTGAAAAGCACTTATTTCTTTGATAAGACGGTCCGTCAAAAATTGAACATCACTTAGATCACACAAAGTCTCTAGAGCAACTTTGGTTTCGGAAGATTGAAGTCCCTGAGTTGTATTTTTATGTACATATTTCCACTCGACGTGTGGACATTGAGTAATAGATAAGGGAGTGTGTGAAGTGGATGAATAAAGATTAAATGAAGTGGAAGGATTGGATCCTATATTTCCTCCCCATATAGTGATCGTTGGTCCACACAAGTGAGTAAATCTCGCTTTACCATAAA] [-] EMBL CD096796 [AAGGTGAACGATTAGGTGTGGTTTAAGTAACAGTATTTGCTCCAACAACAATGTTAATCCAAGCCCTTGCATCCAGCCCACTGTGTTGAATAGTAAACGCGGTTTTGGTTCAGGTAAATTAACGTAAGCATCATATACAAAGCTGAGGCATTTCAAGTAGAAACTGGGATCATCAGAGGGTGTAATGCATCCGACAAAACACTGACGAAGAATATTTACATTGGTGGATAAAGTATGAGTATATGGAGGGCCAAACAATGGCAGTTTGACCAGACACAAACTTATAATTCCGTTTGGAGTAAATTCAGGTTGGCCAATATCACAATCAAGAAATGCAACACACTTTTCTTTAAGTGGATATTCCACATCTGTAAGGATTTTGTTTGATAAAAAACGCAGTAGAGATGATTTTCCACGCACCCTACGGACCACAAATTAATAACTTCCTCACACA ] [+] EMBL CD149080 [ TGTTAATCCATTCCCTTGCATCCAGCCCATTGTGTTGACTAGTAAACGCGGTTTTGGTTCAGGTAGATTAACGTAAGCATCATATACAAAGCTGAGGCATTTCAAGTAGAAACTGGGATCATCAGAGGGTGTAATGCAACCGACAAAACACTGACGAAGAATATTTACATTGGTGGATAAAGTATGAGTATATGGAGGACCAGACAATGGCAGTTTGACCAGACACAAACTTATAATTCCGTTTGGAGTAAATTCAGGTTGACCAATATCACAATCAAGAACTGCAACACACTTTTCTTTAAGTGGATATTCCGCATCTGTAAGGATTTTGTTTGATAAAAAACGCAGTAGAGATGATTTTCCA GCACCCTTCGGACCACAAATTAATAACTTCCTCACACAATCATCACGAGGAGCAACTACGGGGACAGAGCTGAGTTTCAGTGAAATATGTGAAACTTCTGGTGCAACCTGATATCCAAGGCTTCCATCATGCTCGAGGAAAGTAAATCCAAGTAATTTAGCTAAGGAGGCATTTGGTACAGT ] [-] EMBL CD096041 [ GCAGTTTGGCCAGACACAAACTTATAATTCCGTTTGGAGTAAATTCAGGTTGACCAATATCACAATCAAGAACTGCAACACACTTTTCTTTAAGTGGATATTCCACATCTGTAAGGATTTTGTTTGATAAAAAACGCAGTAGAGATGATTTTCCA GCACCCTTCGGACCACAAATTAATAACTTCCTCACACAATCATCACGAGGAGCAACTACGGGGACAGAGCTGAGTTTCAGTGAAATATGTGAAACTTCTGGTGCAACCTGATATCCAAGGCTTCCATCATGCTCGAGGAAAGTAAATCCAAGTAATTTAGCTAAGGAGGCATTTGGTACAGTGCCTTCTGATGGTAGATGAAACAAAAAACGAAACCGCTTAATCTCAGAAATTGAGTCCAGGACTCGACTCTGGCAAGGACTGAAATGTAAA ] [+] EMBL CD164972 [ ACAAATTAATAACTTCCTCACACAATCATCACGAGGAGCAACTACGGGGACAGAGCTGAGTTTCAGTGAAATATGTGAAACTTCTGGTGCAACCTGATATCCAAGGCTTCCATCATGCTCGAGGAAAGTAAATCCAAGTAATTTAGCTAAGGAGGCATTTGGTACAGTGCCTTCTGATGGTAGATGAAACAAAGAACGAAACCGCTTAATCTCAGAAATTGAGTCCAGGACTCGACTCTGGCAAGGACTGAAATGTAAAACGGTCACATCTTCCTGAAAAGCACTTATTTCTTTGATAAGACGGTCCGTCAAAAATTGAACATCACTTAGATCACACAAAGTCTCTAGAGCAATTTTGGTTTCGGAAGATTGAAG ] [+] EMBL CD153691 [ TCACGAGGAGCAACTACGGGGACAGAGCTGAGTTTCAGTGAAATATGTGAAACTTCTGGTGCAACCTGATATCCAAGGCTTCCATCATGCTCGAGGAAAGTAAATCCAAGTAATTTAGCTAAGGAGGCATTTGGTACAGTGCCTTCTGATGGTAGATGAAACAAAAAACGAAACCGCTTAATCTCAGAAATTGAGTCCAGGACTCGACTCTGGCAAGGACTGAAATGTAAAACAGTCACATCTTCCTGAAAAGCACTTATTTCTTTGATAAGACGGTCCGTCAAAAATTGAACATCACTTAGATCACACAA ] [-] EMBL CD148784 [ TGAGTTTCAGTGAAATATGTGAAACTTCTGGTGCAACCTGATACCCAAGGCTTCCATCATGCTCGAGGAAAGTAAATCCAAGTAATTTAGCTAAGGAGGCATTTGGTACAGTGCCTTCTGATGGTAGATGAAACAAAAAACGAAACCGCTTAATCTCAGAAATTGAGTCCAGGACTCGACTCTGGCAAGGACTGAAATGTAAAACGGTCACA ] [+] EMBL CD163252 [ AAATCCAAGTAATTTAGCTAAGGAGGCATTTGGTACAGTGCCTTCTGATGGTAGATGAAACAAAAAACGAAACCGCTTAATCTCAGAAATTGAGTCCAGGACTCGACTCTGGCAAGGACTGAAATGTAAAACGGTCACATCTTCCTGAAAAGCACTTATTTCTTTGATAAGACGGTCCGTCAAAAATTGAACATCACTTAGATCACACAAAGTCTCTAGAGCAACTTTGGTTTCGGAAGATTGAAGTCCCTGAGTTGTATTTTTATGTACATATTTCCACTCGACGTGTGGACATTGAGTAATAGATAAGGGAGTGTGTGAAGTGGATGAATAAAGATTAAATGAAGTGGAAGGATTGGATCCTATATTTCCTCCCCATATAGTGATCGTTGGTCCACACAAGTGAGTAAATCTCGCTTTACCATAAA] [+] EMBL CD163350 [ AAATCCAAGTAATTTAGCTAAGGAGGCATTTGGTACAGTGCCTTCTGATGGTAGATGAAACAAAAAACGAAACCGCTTAATCTCAGAAATTGAGTCCAGGACTCGACTCTGGCAAGGACTGAAATGTAAAACGGTCACATCTTCCTGAAAGGCACTTATTTCTTTGATAAGACGGTCCGTCAAAAATTGAACATCACTTAGATCACACAAAGTCTCTAGAGCAACTTTGGTTTCGGAAGATTGAAGTCCCTGAGTTGTATTTTTATGTACATATTTCCACTCGACGTGTGGACATTGAGTAATAGATAAGGGAGTGTGTGAAGTGGATGAATAAAGATTAAATGAAGTGGAAGGATTGGATCCTATATTTCCTCCCCATATAGTGATCGTTGGTCCACACAAGTGAGTAAATCTCGCTTTACCATAAA] [+] EMBL CD163323 [ AAATCCAAGTAATTTAGCTAAGGAGGCATTTGGTACAGTGCCTTCTGATGGTAGATGAAACAAAAAACGAAACCGCTTAATCTCAGAAATTGAGTCCAGGACTCGACTCTGGCAAGGACTGAAATGTAAAACGGTCACATCTTCCTGAAAGGCACTTATTTCTTTGATAAGACGGTCCGTCAAAAATTGAACATCACTTAGATCACACAAAGTCTCTAGAGCAACTTTGGTTTCGGAAGATTGAAGTCCCTGAGTTGTATTTTTATGTACATATTTCCACTCGACGTGTGGACATTGAGTAATAGATAAGGGAGTGTGTGAAGTGGATGAATAAAGATTAAATGAAGTGGAAGGATTGGATCCTATGTTTCCTCCCCATATAGTGATCGTTGGTCCACACAAGTGAGTAAATCTCGCTTTACCATAAA] [+] EMBL CD162358 [ gcCTGGCAAGGACTGAAATGTAAAACGGTCACATCTTCCTGAAAAGCACTTATTTCTTTGATAAGACGGTCCGTCAAAAATTGAACATCACTTAGATCACACAAAGTCTCTAGAGCAACTTTGGTTTCGGAAGATTGAAGTCCCTGAGTTGTATTTTTATGTACATATTTCCACTCGACGTGTGGACATTGAGTAATAGATAAGGGAGTGTGTGtgccagg ] [+] EMBL CD120578 [ ATGTAAAATGGCCACATCTTCCTGAAAAGCACTTATTTCTTTGATAAGACGGTCCGTCAAAAATTGAACATCACTTAGATCACACAAAGTCTCTAGAGCAACTTTGGTTTCGGAAGATTGAAGTCCCTGAGTTGTATTTCTATGTACATATTTCCACTCGACGTGTGGACATTGAGTAATAGATAAG ] [+] EMBL CD120521 [ ATGTAAAACGGTCACATCTTCCTGAAAAGCACTTATTTCTTTGATAAGACGGTCCGTCAAAAATTGAACATCACTTAGATCACACAAAGTCTCTAGAGCAACTTTGGTTTCGGAAGATTGAAGTCCCTGAGTTGTATTTTTATGTACATATTTCCACTCGACGTGCGGACATTGAGTAATAGATAAG ] [-] EMBL CD120555 [ TGTAAAACGGTCACATCTTCCTGAAAAGCACTTATTTCTTTGATAAGACGGTCCGTCAAAAATTGAACATCACTTAGATCACACAAAGTCTCTAGAGCAACTTTGGTTTCGGAAGATTGAAGTCCCTGAGTTGTATTTTTATGTACATATTTCCACTCGACGTGTGGACATTGAGTAATAGATAAGG ] [+] EMBL CD202609 [ GTAAAACGGTCACATCTTCCTGAAAAGCACTTATTTCTTTGATNNAACGGTCCGTCAAAAATTGAACATCACTTAGATCACACAAAGTCTCTAGAGCAACTTTGGTTTCGGAAGATTGAAGGCCCTGAGTTGTATTTTTATGTACATATTTCCACTCGACGTGTGGACATTGAGTAATAGATAAGGGAGTGTGTGAAGTGGATGAATAAAGATTAAATGAAGTGGAAGGATTGGATCCTATA ] clustalw multiple alignements is not computed in this case |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||