These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10249#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1738 fasta sequence [ATATTTTTATTCCATTCCAAATTACAGATAATCAAAACTTAGCAATCAGGAACTAATCAAAATAAAATACTTCAAAAGATTATACTAGAGTAGTCAATAAAATTTATACTCACATACGAATACGTTTACAATTACCAACCATCCAAATAAGATGCAATAATAATAATAATAAGGATGTTTTTCTCTTAATAGATAATGGATATTGAAATAATATATTAAGAAACTCTAGTCTTTTAATATGATGGGGATCTTTAAACTAGTATGAAAGTGTTGAAAACAATGTAGAACTAATTTAAAAGATGGCGTATACGAAATAACAGTAATTGACAGGCGAGTGATTTGTTGTTGCTTTATCGTTAATAAAGATTTTTATTGTACGAATATAAACTGTGTACACCACCTTCCAGTTGAGCTGATGAACTTCGAAGTTCAAAGCGTAACTTTCCACTTCTCGACATATTGTGCAATTCTGTTATACTTCTAGCGCCAATTTGTTGTAATCCATGTTTAACACCAGCTACTAAATACGGAACCAACTGATGAACTGAACCTCTATCAATAATTGTTCCAGAAACACCTTGGGCAACTTTAATACGATCTGATTCACTGAAATATCTTGCTTGACTTTCTGTATGCTGGGACATTGCTTCTAGACTCCCCATACCTCGGTATTTTTTCAATTTCACGCCATCCGAAAATATATATTCTCCAGCTGACTCCGTTGTACCAGCTAANAGTCCACCCATCATAACTGAAGATGCACCAAAACTCAAAGCTTTAACAATATGACCGGCATTTTGAATACCACCATCTGCTATCACAGGCACATCGTACTTATGAGCATATTCAGATACTTTATAAACAGCCTTAGCTTGTGATCTACCAATAGCAGTCACTTCTTGAGTAATACAAATTGACCCACTGCCCATTCCAACGCGTAACCCGTCCACACCAGCATCAATTAAATTTTTCGCTTGTGCACACGTAACAACATTTCCTCCAATTATTTGTAAATCTGGGAACACAGATTTTACGCGCTTTATCATATCCAGTTGATAGATGCTATTACCTTGGGAAGAATCTATAACAATAATATCGACTCCAGCGTTAACCAAAGCATTGACACGATCAAAATCACGCTCTTGTGTAGAAATAGCTGCACCAACAATTAACTGGTTTTCGGAATCTTTGGATGCTAGTGGATGATCTTGATTCTTTTTTAAGTCAGTTCGGGCAATCAATGCCACCAATTCACGATTTTCGTTAATAATTGGTAATTTACCTTTTTTGCTCTTTCGAAGAAGATCATTTGCTTCAGACAATGTCACACCGGAGAACGCTGTAACAAGATCATCAAATGGCGTCATTACTTTTTCAACAGGTGTGTTGAAATCATTCGGGTCCAAGAAATCCACATCACGAAGAGTGACTAAACCGACCAAGCGACTTCCCATATAACCATCTTCAGTCACAGGAATCCCACCAAATCCATATTTTTTCTTTATTTCAATGATATCATAAATGGGTTGTCTTGGTGAAACAACAACTGGAGAAAGGATGAACCCTTGATTATATTTCTTAACCTTCTTCACTTCATTTGCTTGGGCCTCAACAGAACAGTTGTTGTGTACAAAACCTATTGAACCACAAAGACTCATTGCTATAGCCATTTTTGCTTCAGTAACTGTATCCATGGGAGATGATGCAAAGGGAACTTTCAAAGAAAATCGTTTGCATA] [+] EMBL BF936918 [ATATTTTTATTCCATTCCAAATTACAGATAATCAAAACTTAGCAATCAGGAACTAATCAAAATAAAATACTTCAAAAGATTATACTAGAGTAGTCAATAAAATTTATACTCACATACGAATACGTTTACAATTACCAACCATCCAAATAAGATGCAATAATAATAATAATAAGGATGTTTTTCTCTTAATAGATAATGGATATTGAAATAATATATTAAGAAACTCTAGTCTTTTAATATGATGGGGATCTTTAAACTAGTATGAAAGTGTTGAAAACAATGTAGAACTAATTTAAAAGATGGCGTATACGAAATAACAGTAATTGACAGGCGAGTGATTTGTTGTTGCTTTATCGTTAATAAAGATTTTTATTGTACGAATATAAACTGTGTACACCACCTTCCAGTTGAGCTGATGAACTTCGAAGTTCAAAGCGTAACTTTCCACTTCTCGACATATTGTGCAATTCTGTTATACTTCTAGCGCCAATTTGTTGTAATCCATGTTTAACACCAGCTACTAAATACGGAACCAACTGATGAACTGAACCTCTATCA ] [+] EMBL CD076462 [ATATTTTTATTCCATTCCAAATTACAGATAATCAAAACTTAGCAATCAGGAACTAATCAAAATAAAATACTTCAAAAGATTATACTAGAGTAGTCAATAAAATTTATACTCACATACGAATACGTTTACAATTACCAACCATCCAAATAAGATGCAATAATAATAATAATAAGGATGTTTTTCTCTTAATAGATAATGGATATTGAAATAATATATTAAGAAACTCTAGTCTTTTAATATGATGGGGATCTTTAAACTAGTATGAAAGTGTTGAAAACAATGTAGAACTAATTTAAAAGATGGCGTATACGAAATAACAGTAATTGACAGGCGAGTGATTTGTTGTTGCTTTATCGTTAATAAAGATTTTTATTGTACGAATATAAACTGTGTACACCACCTTCCAGTTGAGCTGATGAACTTCGAAGTTCAAAGCGTAACTTTCCACTTCTCGACATATTGTGCAATTCTGTTATACTTCTAGCGC ] [+] EMBL CD075761 [ GGAACTAATCAAAATAAAATACTTCAAAAGATTATACTAGAGTAGTCAATAAAATTTATACTCACATACGAATACGTTTACAATTACCAACCATCCAAATAAGATGCAATAATAATAATAATAAGGATGTTTTTCTCTTAATAGATAATGGATATTGAAATAATATATTAAGAAACTCTAGTCTTTTAATATGATGGGGATCTTTAAACTAGTATGAAAGTGTTGAAAACAATGTAGAACTAATTTAAAAGATGGCGTATACGAAATAACAGTAATTGACAGGCGAGTGATTTGTTGTTGCTTTATCGTTAATAAAGATTTTTATTGTACGAATATAAACTGTGTACACCACCTTCCAGTTGAGCTGATGAACTTCGAAGTTCAAAGCGTAACTTTCCACTTCTCGACATATTGTGCAATTCTGTTATACTTCTAGCGCCAATTTGTTGTAATCCATGTTTAACACCAGCTACTAAATACGGAACCAACTGATGAACTGAACCTCTATCAATAATTGTTCCAGAAACACCTTGGGCAACTTTAATACGATCTGATTCACTGAAATATCTTGCTTGACTNTCTGTATGCTGGGACATTG ] [+] EMBL CD074372 [ GAACTAATCAAAATAAAATACTTCAAAAGATTATACTAGAGTAGTCAATAAAATTTATACTCACATACGAATACGTTTACAATTACCAACCATCCAAATAAGATGCAATAATAATAATAATAAGGATGTTTTTCTCTTAATAGATAATGGATATTGAAATAATATATTAAGAAACTCTAGTCTTTTAATATGATGGGGATCTTTAAACTAGTATGAAAGTGTTGAAAACAATGTAGAACTAATTTAAAAGATGGCGTATACAAAATAACAGTAATTGACAGGCGAGTGATTTGTTGTTGCTTTATCGTTAATAAAGATTTTTATTGTACGAATATAAACTGTGTACACCACCTTCCAGTTGAGCTGATGAACTTCGAAGTTCAAAGCGTAACTTTCCACTTCTCGACATATTGTGCAATTCTGTTATACTTCTAGCGCCAATTTGTTGTAATCCATGTTTAACACCAGCTACTAAATACGGAACCAACTGATGAACTGAACCTCTATCAATAATTGTTCCAGAAACACCTTGGGCAACTTTAATACGATCTGATTCACTGAAATATCTTGCTTGACTTTCTGTATGCTGGGACATTGCTTCTAGACTCCCCATACCTCGGTATTTTTTCAATTTCACGCCATCCGAAAATATATATTCTCCAGCTGACTCCGTTGTACCAGCTAANAGTCCACCCATCATA ] [-] EMBL CD080461 [ TAGTCTTTTAATATGATGGGGATCTTTAAACTAGTATGAAAGTG TGAAAACAATGTAGAACTAATTTAAAAGATGGCGTATACAAAATAACAGTAATTGACAGGCGAGTGATTTGTTGTTGCTTTATCGTTAATAAAGATTTTTATTGTACGAATATAAACTGTGTACACCACCTTCCAGTTGAGCTGATGAACTTCGAAGTTCAAAGCGTAACTTTCCACTTCTCGACATATTGTGCAATTCTGTTATACTTCTAGCGCCAATTTGTTGTAATCCATGTTTAACACCAGCTACTAAATACGGAACCAACTGATGAACTGAACCTCTATCAATAATTGTTCCAGAAACACCTTGGGCAACTTTAATACGATCTGATTCACTGAAATATCTTGCTTGACTTTCTGTATGCTGGGACATTGCTTCTAGACTCCCCATACCTCGGTATTTTTTCAATTTCACGCCATCCGAAAATATATATTCTCCAGCTGACTCCGTTGTACCAGCTAAAAGTCCACCCATCATAACTGAAGATGCACCAAAACTCAAAGCTTTAACAATATGACCGGCATTTTGAATACCACCATCTGCTATCACAGGCACATCGTACTTATGAGCATATTCAGATACTTTATAAACAGCC ] [-] EMBL BG931299 [ TCTTTAAACTAGTATGAAAGTGTTGAAAACAATGTAGAACTAATTTAAAAGATGGCGTATACGAAATAACAGTAATTGACAGGCGAGTGATTAGTTGTTGCTTTATCGTTAATACAGATTTTTATTGTACGAATATAAACTGTGTACACCACCTTCCAGTTGAGCTGATGAACTTCGAAGTTCAAAGCGTAACTTTCCACTTCTCGACATATTGTGCAATTCTGTTATACTTTTAGCGCCAATTTGTTGTAATCCATGTTTAACACCAGCTACTAAATACGGAACCAATTGATGAACTGAc ] [-] EMBL BG930665 [ GACAGGCGAGTGATTTGTTGTTGCTTTATCGTTAATAAAGATTTTTATTGTACGAATATAAACTGTGTACACCACCTTCCAGTTGAGCTGATGAACTTCGAAGTTCAAAGCGTAACTTTCCACTTCTCGACATATTGTGCAATTCTGTTATACTTCTAGCGCCAATTTGTTGTAATCCATGTTTAACACCAGCTACTAAATACGGAACCAACTGATGAACTGAt ] [-] EMBL BG931115 [ ATTTTTATTGTACGAATATAAACTGTGTACACCACCTTCCAGTTGAGCTGATGAACTTCGAAGTTCAAAGCGTAACTTTCCACTTCTCGACATATTGTGCAATTCTGTTATACTTCTAGCGCCAATTTGTTGTAATCCATGTTTAACACCAGCTACTAAATACGGAACCAACTGATGAACTGAc ] [-] EMBL CD082876 [ ACCAAAACTCAAAGCTTTAACAATATGACCGGCATTNTGAATACCACCATCTGCTATCACAGGCACATCGTACTTATGAGCATATTCAGATACTTTATAAACAGCTTTAGCTTGTGATCTACCAATAGCAGTCACTTCTTGAGTAATACAAATTGACCCACTGCCCATTCCAACGCGTAACCCGTCCACACCAGCATCAATTAAATTTTTCGCTTGTGCACACGTAACAACATTTCCTCCAATTATTTGTAAATCTGGGAACACAGATTTTACGCGCTTTATCATATCCAGTTGATAGATGCTATTACCTTGGGAAGAATCTATAACAATAATATCGACTCCAGCGTTAACCAAAGCATTGACACGATCAAAATCACGCTCTTGTGTAGAAATAGCTGCACCAACAATTAACTGGTTTTCGGAATCTTTGGATGCTAGTGGATGATCTTGATTCTTTTTTAAGTCAGTTCGGGCAATCAATGCCACCAATTCACGATTTTCGTTAATAATTGGTAATTTACCTTTTTTGCTCTTTCGAAGAAGATCATTTGCTTCAGACAATGTCACcct ] [-] EMBL BF936977 [ AGCTGCACCAACAATTAACTGGTTTTCGGAATCTTTGGATGCTAGTGGATGATCTTGATTCTTTTTTAAGTCAGTTCGGGCAATCAATGCCACCAATTCACGATTTTCGTTAATAATTGGTAATTTACCTTTTTTGCTCTTTCGAAGAAGATCATTTGCTTCAGACAATGTCACACCGGAGAACGCTGTAACAAGATCATCAAATGGCGTCATTACTTTTTCAACAGGTGTGTTGAAATCATTCGGGTCCAAGAAATCCACATCACGAAGAGTGACTAAACCGACCAAGCGACTTCCCATATAACCATCTTCAGTCACAGGAATCCCACCAAATCCATATTTTTTCTTTATTTCAATGATATCATAAATGGGTTGTCTTGGTGAAACAACAACTGGAGAAAGGATGAACCCTTGATTATATTTCTTAACCTTCTTCACTTCATTTGCTTGGGCCTCAACAGAACAGTTGTTGTGTACAAAACCTATTGAACCACAAAGACTCATTG ] [-] EMBL AI975653 [ TTGCTTCAGACAATGTCACACAGGAGATCGCTGTAACAAGATCATCAAATGGCGTCATTACTTTTTCAACAGGTGTGTTGATATCATTCGGGTCCAAGAAATCCACATCACGAAGAGTGACTAAACCGACCAAGCGACTTCCCATATAACCATCTTCAGTCACAGGAATCCCACCAAATCCATATTTTTTCTTTATTTCAATGATATCATAAATGGGTTGTCTTGGTGAAGCTGCACCTGGAGAAAGTATGAACCCTTGATTATATTTCTTAACCTTCTTCACTTCATTTGCTTGGGCCTCAACAGAACAGTTGTTGTGTACAAAACCTATTGAACCACAAAGACTCATTG ] [+] EMBL CD192087 [ CATCTTCAGTCACAGGAATCCCACCAAATCCATATTTTTTCTTTATTTCAATGATATCATAAATGGGTTGTCTTGGTGAAACAACAACTGGAGAAAGGATGAACCCTTGATTATATTTCTTAACCTTCTTCACTTCAATTGCTTGGGCCTCAACAGAACAGTTGTTGTGTACAAAACCTATTGAACCACACAGAC ] [+] EMBL CD192139 [ CATCTTCAGTCACAGGAATCCCACCAAATCCATATTTTTTCTTTATTTCAATGATATCATTAATGGGTTGTCTTGGTGAAACAACACTTGGAGAAAGGATGAACCCTTGATTATATTTCTTAACCTTCTTCACTTCAATTGCTTGGGCCTCAACAGAACAGTTGTTGTGTACAAAACCTATTGAACCACAAAGACTCATTGCTATAGCCATTTTTGCTTCAGTAACTGTATCCATGGGAGATGATGCAAAGGGAACTTTCAAAGAAAATCGTTTGCATA] consensusID : consensus_10249#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 238 fasta sequence [TCCATATAACCATCTTCAGTCACAGGAATCCCACCAAATCCATATTTTTTCTTTATTTCAATGATATCATAAATGGGTTGTCTTGGTGAAACAACAACTGGAGAAAGGATGAACCCTTGATTATATTTCTTAACCTTCTTCACTTCATTTGCTTGGGCAACTTTAATACGATCTGATTCACTGAAATATCTTGCTTGACTTTCTGTATGCTGGGACATTGCTTCTAGACTCCCTCGAC] [-] EMBL CD125732 [TCCATATAACCATCTTCAGTCACAGGAATCCCACCAAATCCATATTTTTTCTTTATTTCAATGATATCATAAATGGGTTGTCTTGGTGAAACAACAACTGGAGAAAGGATGAACCCTTGATTATATTTCTTAACCTTCTTCACTTCATTTGCTTGGGCAACTTTAATACGATCTGATTCACTGAAATATCTTGCTTGACTTTCTGTATGCTGGGACATTGCTTCTAGACTCCCTCGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10249#0 ATATTTTTATTCCATTCCAAATTACAGATAATCAAAACTTAGCAATCAGGAACTAATCAA 60 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 AATAAAATACTTCAAAAGATTATACTAGAGTAGTCAATAAAATTTATACTCACATACGAA 120 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 TACGTTTACAATTACCAACCATCCAAATAAGATGCAATAATAATAATAATAAGGATGTTT 180 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 TTCTCTTAATAGATAATGGATATTGAAATAATATATTAAGAAACTCTAGTCTTTTAATAT 240 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 GATGGGGATCTTTAAACTAGTATGAAAGTGTTGAAAACAATGTAGAACTAATTTAAAAGA 300 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 TGGCGTATACGAAATAACAGTAATTGACAGGCGAGTGATTTGTTGTTGCTTTATCGTTAA 360 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 TAAAGATTTTTATTGTACGAATATAAACTGTGTACACCACCTTCCAGTTGAGCTGATGAA 420 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 CTTCGAAGTTCAAAGCGTAACTTTCCACTTCTCGACATATTGTGCAATTCTGTTATACTT 480 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 CTAGCGCCAATTTGTTGTAATCCATGTTTAACACCAGCTACTAAATACGGAACCAACTGA 540 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 TGAACTGAACCTCTATCAATAATTGTTCCAGAAACACCTTGGGCAACTTTAATACGATCT 600 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 GATTCACTGAAATATCTTGCTTGACTTTCTGTATGCTGGGACATTGCTTCTAGACTCCCC 660 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 ATACCTCGGTATTTTTTCAATTTCACGCCATCCGAAAATATATATTCTCCAGCTGACTCC 720 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 GTTGTACCAGCTAANAGTCCACCCATCATAACTGAAGATGCACCAAAACTCAAAGCTTTA 780 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 ACAATATGACCGGCATTTTGAATACCACCATCTGCTATCACAGGCACATCGTACTTATGA 840 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 GCATATTCAGATACTTTATAAACAGCCTTAGCTTGTGATCTACCAATAGCAGTCACTTCT 900 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 TGAGTAATACAAATTGACCCACTGCCCATTCCAACGCGTAACCCGTCCACACCAGCATCA 960 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 ATTAAATTTTTCGCTTGTGCACACGTAACAACATTTCCTCCAATTATTTGTAAATCTGGG 1020 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 AACACAGATTTTACGCGCTTTATCATATCCAGTTGATAGATGCTATTACCTTGGGAAGAA 1080 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 TCTATAACAATAATATCGACTCCAGCGTTAACCAAAGCATTGACACGATCAAAATCACGC 1140 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 TCTTGTGTAGAAATAGCTGCACCAACAATTAACTGGTTTTCGGAATCTTTGGATGCTAGT 1200 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 GGATGATCTTGATTCTTTTTTAAGTCAGTTCGGGCAATCAATGCCACCAATTCACGATTT 1260 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 TCGTTAATAATTGGTAATTTACCTTTTTTGCTCTTTCGAAGAAGATCATTTGCTTCAGAC 1320 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 AATGTCACACCGGAGAACGCTGTAACAAGATCATCAAATGGCGTCATTACTTTTTCAACA 1380 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 GGTGTGTTGAAATCATTCGGGTCCAAGAAATCCACATCACGAAGAGTGACTAAACCGACC 1440 consensus_10249#1 ------------------------------------------------------------ consensus_10249#0 AAGCGACTTCCCATATAACCATCTTCAGTCACAGGAATCCCACCAAATCCATATTTTTTC 1500 consensus_10249#1 ---------TCCATATAACCATCTTCAGTCACAGGAATCCCACCAAATCCATATTTTTTC 51 ************************************************** consensus_10249#0 TTTATTTCAATGATATCATAAATGGGTTGTCTTGGTGAAACAACAACTGGAGAAAGGATG 1560 consensus_10249#1 TTTATTTCAATGATATCATAAATGGGTTGTCTTGGTGAAACAACAACTGGAGAAAGGATG 111 ************************************************************ consensus_10249#0 AACCCTTGATTATATTTCTTAACCTTCTTCACTTCATTTGCTTGGGCCTCAACAGAACAG 1620 consensus_10249#1 AACCCTTGATTATATTTCTTAACCTTCTTCACTTCATTTGCTTGGGCAACTTTAATACGA 171 *********************************************** * * ** consensus_10249#0 TTGTTGTGTACAAAACCTATTGAACCACAAAGACTCATTGCTATAGCCATTTTTGCTTCA 1680 consensus_10249#1 TC-TGATTCACTGAAA-TATCTTGCTTGACTTTCTGTATGCTG-GGACATTGCTTCTAGA 228 * * * ** ** *** * * ** **** * **** * ** * consensus_10249#0 GTAACTGTATCCATGGGAGATGATGCAAAGGGAACTTTCAAAGAAAATCGTTTGCATA 1738 consensus_10249#1 CTCCCTCGAC------------------------------------------------ 238 * ** * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||