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Schistosoma mansoni
cluster # 10254 cluster # 10254       Sequences # 14       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10254#0 length = 996 sequences # 5  
consensus_10254#1 length = 783 sequences # 4  
consensus_10254#2 length = 765 sequences # 3  
consensus_10254#3 length = 307 sequences # 1  
consensus_10254#4 length = 251 sequences # 1  

consensusID : consensus_10254#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 996
fasta sequence
                              [TTTTATAAAGTATATTTTATTAATTCTTATAGAGTACACTTTCATTTACGTTTTACTATTAAAAGCATTGAAATTCATAATAATATAAAGTATTAAAGTACCAGTGTACTCATTATTATTATTATCATTCAATAAAGTACTTTGGAAAACAAAATATAGGCAAAAATGGAACCATTTGTACAAGTATTCTTTGCTATTGATAGAGATGGAACTGAAACTATCACAGTAGAAGAATTGAAAAAGTATGTTGCTGAAAATAAACTTGATGATATGATGGTTACAAAATGGAAATCATTATTTGATCCCAAAGGTACTGGAAGAATAACATTTAAAACTTTTTGTGATGTATTGGGTTTGAGTCCTGCACAAGCAGTAGCCATGAAAACACAACATCAGCAAGCATCTTCATTGAAACTTCATCCAGATGTTGTTGTAATCTATGAACAACTTCCATTAGATAGACAAGTCGCTATTAGTAATAAAGCAATTGAACTATTAACATCTTCAAAGAAATTCGATGAGAAAGATCAAGCTGTTCAATTGAAACAATGGTTAGATATCACTTATGGTAAAGCATGGCACATTGTCATAGTTAAAGGATCATTTTGGAGTAGTTATTCACATAGTGCTAATAAATGTTTTATATTTCGTGTACGTGATGTATCTTATCTTGTATGGAGAACACCAGATGAAGAAATAACCAGTGCATAAATAAATAATTAGATAACTTGAAGAGAAACAAACAATTTAAAAAGATAGTTAACAGTAAATGCTTTGTTAAAACATATGAAAACGGCACAGATCTACTGCTGTCAGGGATACAACAGCTTGACACTTCAGTTCAAGATATCGATGGATTCAATGAGGTGCATTGCTTTGTCACTAGACGGAATCTGACGCCACACAATGAAGGAGAGTGGATAGGGCGCAAGTGCTAAGGGTCTCATCAATAAATGTTTTTATTATTTGTAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AA958327             [TTTTATAAAGTATATTTTATTAATTCTTATAGAGTACACTTTCATTTACGTTTTACTATTAAAAGCATTGAAATTCATAATATTATAAAGTATTAAGGTACCAGTGTACTCATTATTATAATTATCATTCAATAAAGTACTTTGGAAAAC AAATATAGGC AAAATGGAA CATTTGTAC AGTATTCTTTGCTATTGATAGAGATGGAc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD168870             [                                                     TACTATTAAAAGCATTGAAATTCATAATAATATAAAGTATTAAAGTACCAGTGTACTCATTATTATTATTATCATTCAATAAAGTACTTTGGGAAACAAAATATAGGCAAAAATGGAACCATTTGTACAAGTATTCTTTGCTATTGATAGAGATGGAACTGAAACTATCACAGTAGAAGAATTGAAAAAGTATGTTGCTGAAAATAAACTTGATGATATGATGGTTACAAAATGGAAATCATTATTTGATCCCAAAGGTACTGGAAGAATAACATTTAAAACTTTTTGTGATGTATTGGGTTTGAGTCCTGCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL U91941               [                                                                            ATAATAATATAAAGTATTAAAGTACCAGTGTACTCATTATTATTATTATCATTCAATAAAGTACTTTGGAAAACAAAATATAGGCAAAAATGGAACCATTTGTACAAGTATTCTTTGCTATTGATAGAGATGGAACTGAAACTATCACAGTAGAAGAATTGAAAAAGTATGTTGCTGAAAATAAACTTGATGATATGATGGTTACAAAATGGAAATCATTATTTGATCCCAAAGGTACTGGAAGAATAACATTTAAAACTTTTTGTGATGTATTGGGTTTGAGTCCTGCACAAGCAGTAGCCATGAAAACACAACATCAGCAAGCATCTTCATTGAAACTTCATCCAGATGTTGTTGTAATCTATGAACAACTTCCATTAGATAGACAAGTCGCTATTAGTAATAAAGCAATTGAACTATTAACATCTTCAAAGAAATTCGATGAGAAAGATCAAGCTGTTCAATTGAAACAATGGTTAGATATCACTTATGGTAAAGCATGGCACATTGTCATAGTTAAAGGATCATTTTGGAGTAGTTATTCACATAGTGCTAATAAATGTTTTATATTTCGTGTACGTGATGTATCTTATCTTGTATGGAGAACACCAGATGAAGAAATAACCAGTGCATAAATAAATAATTAGATAACTTGAAGAGAAACAAACAATTTAAAAAGATAGTTAACAGTAAATGCTTTGTTAAAACATATGAAAACGGCACAGATCTACTGCTGTCAGGGATACAACAGCTTGACACTTCAGTTCAAGATATCGATGGATTCAATGAGGTGCATTGCTTTGTCACTAGACGGAATCTGACGCCACACAATGAAGGAGAGTGGATAGGGCGCAAGTGCTAAGGGTCTCATCAATAAATGTTTTTATTATTTGTAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AI975371             [                                                                                TAATATAAAGTATTAAAGTACCAGTGTACTCATTATTATTATTATCATTCAATAAAGTACTTTGGAAAACAAAATATAGGCAAAAATGGAACCATTTGTACAAGTATTCTTTGCTATTGATAGAGATGGAACTGAAACTATCACAGTAGAAGAATTGAAAAAGTATGTTGCTGAAAATAAACTTGATGATATGATGGTTACAAAATGGAAATCATTATTTGATCCCAAAGGTACTGGAAGAATAACATTTAAAACTTTTTGTGATGTATTGGGTTTGAGTCCTGCACAAGCAGTAGCCATGAAAACACAACATCAGCAAGCATCTTCATTGAAACTTCATCCAGATGTTGTTGTAATCTATGAACAACTTCCATTAGATAGACAAGTCGCTATTAGTAATAAAGCAATTGAACTATTAACATCTTCAAAGAAATTCGATGAGAAAGATCAAGCTGTTCAATTGAAACAATGGTTAGATATCACTTATGGTAAAGCATGGCACATTGTCATAGTTAAAGGATCATTTTGGAGTAGTTATTCACATAGTGCTAATAAATG                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AA960705             [                                                                                                      AGTGTACTCATTATTATTATTATCATTCAATAAAGTACTTTGGAAAACAAAATATAGGCAAAAATGG ACCATTTGTACAAGTATTCTTTGCTATTGATAGAGATGGAACTGAACCTATCACAGTAGAAGAATTGAAAAAGTATGTTGCTGAAAATAAACTTGATGATATGATGGTTACAAAATGGAAATCATTATTTGATCCCAAAGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]


>consensus_10254#0 TTTTATAAAGTATATTTTATTAATTCTTATAGAGTACACTTTCATTTACGTTTTACTATT AAAAGCATTGAAATTCATAATAATATAAAGTATTAAAGTACCAGTGTACTCATTATTATT ATTATCATTCAATAAAGTACTTTGGAAAACAAAATATAGGCAAAAATGGAACCATTTGTA CAAGTATTCTTTGCTATTGATAGAGATGGAACTGAAACTATCACAGTAGAAGAATTGAAA AAGTATGTTGCTGAAAATAAACTTGATGATATGATGGTTACAAAATGGAAATCATTATTT GATCCCAAAGGTACTGGAAGAATAACATTTAAAACTTTTTGTGATGTATTGGGTTTGAGT CCTGCACAAGCAGTAGCCATGAAAACACAACATCAGCAAGCATCTTCATTGAAACTTCAT CCAGATGTTGTTGTAATCTATGAACAACTTCCATTAGATAGACAAGTCGCTATTAGTAAT AAAGCAATTGAACTATTAACATCTTCAAAGAAATTCGATGAGAAAGATCAAGCTGTTCAA TTGAAACAATGGTTAGATATCACTTATGGTAAAGCATGGCACATTGTCATAGTTAAAGGA TCATTTTGGAGTAGTTATTCACATAGTGCTAATAAATGTTTTATATTTCGTGTACGTGAT GTATCTTATCTTGTATGGAGAACACCAGATGAAGAAATAACCAGTGCATAAATAAATAAT TAGATAACTTGAAGAGAAACAAACAATTTAAAAAGATAGTTAACAGTAAATGCTTTGTTA AAACATATGAAAACGGCACAGATCTACTGCTGTCAGGGATACAACAGCTTGACACTTCAG TTCAAGATATCGATGGATTCAATGAGGTGCATTGCTTTGTCACTAGACGGAATCTGACGC CACACAATGAAGGAGAGTGGATAGGGCGCAAGTGCTAAGGGTCTCATCAATAAATGTTTT TATTATTTGTAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_10254#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 783
fasta sequence
                              [TACTCATTATTATTATTATCATTCAATAAAGTACTTTGGAAAACAAAATATAGGCAAAAATGGAACCATTTGTACAAGTATTCTTTGCTATTGATAGAGATGGAACTGAAACTATCACAGTAGAAGAATTGAAAAAGTATGTTGCTGAAAATAAACTTGATGATATGATGGTTACAAAATGGAAATCATTATTTGATCCCAAAGGTACTGGAAGAATAACATTTAAAACTTTTTGTGATGTATTGGGTTTGAGTCCTGCACAAGCAGTAGCCATGAAAACACAACATCAGCAAGCATCTTCATTGAAACTTCATC-CAGATGTTGTTGTAATCTATGAACAACTTCCATTAGATAGACAAGTCGCTATTAGTAATAAAGCAATTGAACTATTAACATCTTCAAAGAAATTCGATGAGAAAGATCAAGCTGTTCAATTGAAACAATGGTTAGATATCACTTATGGTAAAGCATGGCACATTGTCATAGTTAAAGGATCATTTTGGAGTAGTTATTCACATAGTGCTAATAAATGTTTTATATTTCGTGTACGTGATGTATCTTATCTTGTATGGAGAACACCAGATGAAGAAATAACCAGTGCATAAATAAATAATTAGATAACTTGAAGAGAAACAAACAATTTAAAAAGATAGTTAACAGTAAATGCTTTGTTAAAACATATGAAAACCAATATTATTATGATAAAGATAAAATACAGGGATAATTACTTTTTCTTAAAAAAAAAGAAAAAAAAAAAANAAACATGCCATGCAGCTGCATTAC]

[+] EMBL SMU86673             [TACTCATTATTATTATTATCATTCAATAAAGTACTTTGGAAAACAAAATATAGGCAAAAATGGAACCATTTGTACAAGTATTCTTTGCTATTGATAGAGATGGAACTGAAACTATCACAGTAGAAGAATTGAAAAAGTATGTTGCTGAAAATAAACTTGATGATATGATGGTTACAAAATGGAAATCATTATTTGATCCCAAAGGTACTGGAAGAATAACATTTAAAACTTTTTGTGATGTATTGGGTTTGAGTCCTGCACAAGCAGTAGCCATGAAAACACAACATCAGCAAGCATCTTCATTGAAACTTCATC CAGATGTTGTTGTAATCTATGAACAACTTCCATTAGATAGACAAGTCGCTATTAGTAATAAAGCAATTGAACTATTAACATCTTCAAAGAAATTCGATGAGAAAGATCAAGCTGTTCAATTGAAACAATGGTTAGATATCACTTATGGTAAAGCATGGCACATTGTCATAGTTAAAGGATCATTTTGGAGTAGTTATTCACATAGTGCTAATAAATGTTTTATATTTCGTGTACGTGATGTATCTTATCTTGTATGGAGAACACCAGATGAAGAAATAACCAGTGCATAAATAAATAATTAGATAACTTGAAGAGAAACAAACAATTTAAAAAGATAGTTAACAGTAAATGCTTTGTTAAAACATATGAAAACCAATATTATTATGATAAAGATAAAATACAGGGATAATTACTTTTTCTTAAAAA                                          ]
[-] EMBL CD140911             [                                                                                                                                                                                                                       ATAACATTTAAAACTTTTTGTGATGTATTGGGTTTGAGTCCTGCACAAGCAGTAGCCATGAAAACACAACATCAGCAAGCATCTTCATTGAAACTTCATC CAGATGTTGTTGTAATCTATGAACAACTTCCATTAGATAGACAAGTCGCTATTAGTAATAAAGCAATTGAACTATTAACATCTTCAAAGAAATTCGATGAGAAAGATCAAGCTGTTCAATTGAAACAATGGTTAGATATCACTTATGGTAAAGCATGGCACATTGTCATAGTTAAAGGATCATTTTGGAGTAGTTATTCACATAGTGCTAATAAATGTTTTATATTTCGTGTACGTGATGTATCTTATCTTGTATGGAGAACACCAGATGAAGAAATAACCAGTGCATAAATAAATAATTAGATAACTTGAAGAGAAACAAACAATTTAAAAAGATAGTTAACAGTAAATGCTTT                                                                                                                 ]
[-] EMBL CD140922             [                                                                                                                                                                                                                                                                                  GAAAACACAACATCAGCAAGCATCTTCATTGAAACTTCATC CAGATGTTGTTGTAATCTATGAACAACTTCCATTAGATAGACAAGTCGCTATTAGTAATAAAGCAATTGAACTATTAACATCTTCAAAGAAATTCGATGAGAAAGATCAAGCTGTTCAATTGAAACAATGGTTAGATATCACTTATGGTAAAGCATGGCACATTGTCATAGTTAAAGGATCATTTTGGAGTAGTTATTCACATAGTGCTAATAAATGTTTTATATTTCGTGTACGTGATGTATCTTATCTTGTATGGAGAACACCAGATGAAGAAATAACCAGTGCATAAATAAATAATTAGATAACTTGAAGAGAAACAAACAATTTAAAAAGATAGTTAACAGTAAATGCTTTG                                                                                                                ]
[-] EMBL AI977132             [                                                                                                                                                                                                                                                                                                       ATCTTCATTGAAACTT ATCNCAGATGTTGTTGTAATCTATGAACAACTTCCATTAGATAGACAAGTCGCTATTAGTAATAAAGCAATTGAACTATTAACATCTTCAAAGAAATTCGATGAGAAAGATCAAGCTGTTCAATTGAAACAATGGTTAGATATCACTTATGGTAAAGCATGGCACATTGTCATAGTTAAAGGATCATTTTGGAGTAGTTATTCACATAGTGCTAATAAATGTTTTATATTTCGTGTACGTGATGTATCTTATCTTGTATGGAGAACACCAGATGAAGAAATAACCAGTGCATAAATAAATAATTAGATAACTTGAAGAGAAACAAACAATTTAAAAAGATAGTTAACAGTAAATGCTTTGTTAAAACATATGAAAACCAATATTATTATGATAAAGATAAAATACAGGGATAATTACTTTTTCTTAAAAAAAAAGAAAAAAAAAAAANAAACATGCCATGCAGCTGCATTAC]


>consensus_10254#1 TACTCATTATTATTATTATCATTCAATAAAGTACTTTGGAAAACAAAATATAGGCAAAAA TGGAACCATTTGTACAAGTATTCTTTGCTATTGATAGAGATGGAACTGAAACTATCACAG TAGAAGAATTGAAAAAGTATGTTGCTGAAAATAAACTTGATGATATGATGGTTACAAAAT GGAAATCATTATTTGATCCCAAAGGTACTGGAAGAATAACATTTAAAACTTTTTGTGATG TATTGGGTTTGAGTCCTGCACAAGCAGTAGCCATGAAAACACAACATCAGCAAGCATCTT CATTGAAACTTCATCCAGATGTTGTTGTAATCTATGAACAACTTCCATTAGATAGACAAG TCGCTATTAGTAATAAAGCAATTGAACTATTAACATCTTCAAAGAAATTCGATGAGAAAG ATCAAGCTGTTCAATTGAAACAATGGTTAGATATCACTTATGGTAAAGCATGGCACATTG TCATAGTTAAAGGATCATTTTGGAGTAGTTATTCACATAGTGCTAATAAATGTTTTATAT TTCGTGTACGTGATGTATCTTATCTTGTATGGAGAACACCAGATGAAGAAATAACCAGTG CATAAATAAATAATTAGATAACTTGAAGAGAAACAAACAATTTAAAAAGATAGTTAACAG TAAATGCTTTGTTAAAACATATGAAAACCAATATTATTATGATAAAGATAAAATACAGGG ATAATTACTTTTTCTTAAAAAAAAAGAAAAAAAAAAAANAAACATGCCATGCAGCTGCAT TAC



consensusID : consensus_10254#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 765
fasta sequence
                              [GAGGCCAGACCCGGACTANATTATTATCATTCAATAAAGTACTTTGGAAAACAAAATATAGGCAAAAATGGAACCATTTGTACAAGTATTCTTTGCTATTGATAGAGATGGAACTGAAACTATCACAGTAGAAGAATTGAAAAAGTATGTTGCTGAAAATAAACTTGATGATATGATGGTTACAAAATGGAAATCATTATTTGATCCCAAAGGTACTGGAAGAATAACATTTAAAACTTTTTGTGATGTATTGGGTTTGAGTCCTGCACAAGCAGTAGCCATGAAAACACAACATCAGCAAGCATCTTCATTGAAACTTCATCCAGATGTTGTTGTAATCTATGAACAACTTCCATTAGATAGACAAGTCGCTATTAGTAATAAAGCAATTGAACTATTAACATCTTCAAAGAAATTCGATGAGAAAGATCAAGCTGTTCAATTGAAACAATGGTTAGATATCACTTATGGTAAAGCATGGCACATTGTCATAGTTAAAGGATCATTTTGGAGTAGTTATTCACATAGTGCTAATAAATGTTTTATATTTCGTGTACGTGATGTATCTTATCTTGTATGGAGAACACCAGATGAAGAAATAACCAGTGCATAAATAAATAATTAGATAACTTGAAGAGAAACAAACAATTTAAAAAGATAGTTAACAGTAAATGCTTTGTTAAAACATATGAAAACCAATATTATTATGATAAAGATTAAATACAGGGATAATTACTTTTTCTTAAAAATTGTCTTTAAAAGAAT]

[+] EMBL CD084438             [GAGGCCAGACCCGGACTANATTATTATCATTCAATAAAGTACTTTGGAAAACAAAATATAGGCAAAAATGGAACCATTTGTACAAGTATTCTTTGCTATTGATAGAGATGGAACTGAAACTATCACAGTAGAAGAGTTGAAAAAGTATGTTGCTGAAAATAAACTTGATGATATGATGGTTACAAAATGGAAATCATTATTTGATCCCAAAGGTACTGGAAGAATAACATTTAAAACTTTTTGTGATGTATTGGGTTTGAGTCCTGCACAAGCAGTAGCCATGAAAACACAACATCAGCAAGCATCTTCATTGAAACTTCATCCAGATGTTGTTGTAATCTATGAACAACTTCCATTAGATAGACAAGTCGCTATTAGTAATAAAGCAATTGAACTATTAACATCTTCAAAGAAATTCGATGAGAAAGATCAAGCTGTTCAATTGAAACAATGGTTAGATATCACTTATGGTAAAGCATGGCACATTGTCATAGTTAAAGGATCATTTTGGAGTAGTTATTCACATAGTGCTA                                                                                                                                                                                                                                        ]
[+] EMBL SMU87243             [                   ATTATTATCA TCAATAAAGTACTTTGGAAAACAAAATATAGGCAAAAATGGAACCATTTGTACAAGTATTCTTTGCTATTGATAGAGATGGAACTGAAACTATCACAGTAGAAGAATTGAAAAAGTATGTTGCTGAAAATAAACTTGATGATATGATGGTTACAAAATGGAAATCATTATTTGATCCCAAAGGTACTGGAAGAATAACATTTAAAACTTTTTGTGATGTATTGGGTTTGAGTCCTGCACAAGCAGTAGCCATGAAAACACAACATCAGCAAGCATCTTCATTGAAACTTCATCCAGATGTTGTTGTAATCTATGAACAACTTCCATTAGATAGACAAGTCGCTATTAGTAATAAAGCAATTGAACTATTAACATCTTCAAAGAAATTCGATGAGAAAGATCAAGCTGTTCAATTGAAACAATGGTTAGATATCACTTATGGTAAAGCATGGCACATTGTCATAGTTAAAGGATCATTTTGGAGTAGTTATTCACATAGTGCTAATAAATGTTTTATATTTCGTGTACGTGATGTATCTTATCTTGTATGGAGAACACCAGATGAAGAAATAACCAGTGCATAAATAAATAATTAGATAACTTGAAGAGAAACAAACAATTTAAAAAGATAGTTAACAGTAAATGCTTTGTTAAAACATATGAAAACCAATATTATTATGATAAAGATTAAATACAGGGATAATTACTTTTTCTTAAAAA                ]
[-] EMBL CD073612             [                                                                                                               AACTGAAACTATCACAGTAGAAGAATTGAAAAAGTATGTTGCTGAAAATAAACTTGATGATATGATGGTTACAAAATGGAAATCATTATTTGATCCCAAAGGTACTGGAAGAATAACATTTAAAACTTTTTGTGATGTATTGGGTTTGAGTCCTGCACAAGCAGTAGCCATGAAAACACAACATCAGCAAGCATCTTCATTGAAACTTCATCCAGATGTTGTTGTAATCTATGAACAACTTCCATTAGATAGACAAGTCGCTATTAGTAATAAAGCAATTGAACTATTAACATCTTCAAAGAAATTCGATGAGAAAGATCAAGCTGTTCAATTGAAACAATGGTTAGATATCACTTATGGTAAAGCATGGCACATTGTCATAGTTAAAGGATCATTTTGGAGTAGTTATTCACATAGTGCTAATAAATGTTTTATATTTCGTGTACGTGATGTATCTTATCTTGTATGGAGAACACCAGATGAAGAAATAACCAGTGCATAAATAAATAATTAGATAACTTGAAGAGAAACAAACAATTTAAAAAGATAGTTAACAGTAAATGCTTTGTTAAAACATATGAAAACCAATATTATTATGATAAAGATAAAATACAGGGATAATTACTTTTTCTTAAATTTTGTCTTTAAAAGAAT]


>consensus_10254#2 GAGGCCAGACCCGGACTANATTATTATCATTCAATAAAGTACTTTGGAAAACAAAATATA GGCAAAAATGGAACCATTTGTACAAGTATTCTTTGCTATTGATAGAGATGGAACTGAAAC TATCACAGTAGAAGAATTGAAAAAGTATGTTGCTGAAAATAAACTTGATGATATGATGGT TACAAAATGGAAATCATTATTTGATCCCAAAGGTACTGGAAGAATAACATTTAAAACTTT TTGTGATGTATTGGGTTTGAGTCCTGCACAAGCAGTAGCCATGAAAACACAACATCAGCA AGCATCTTCATTGAAACTTCATCCAGATGTTGTTGTAATCTATGAACAACTTCCATTAGA TAGACAAGTCGCTATTAGTAATAAAGCAATTGAACTATTAACATCTTCAAAGAAATTCGA TGAGAAAGATCAAGCTGTTCAATTGAAACAATGGTTAGATATCACTTATGGTAAAGCATG GCACATTGTCATAGTTAAAGGATCATTTTGGAGTAGTTATTCACATAGTGCTAATAAATG TTTTATATTTCGTGTACGTGATGTATCTTATCTTGTATGGAGAACACCAGATGAAGAAAT AACCAGTGCATAAATAAATAATTAGATAACTTGAAGAGAAACAAACAATTTAAAAAGATA GTTAACAGTAAATGCTTTGTTAAAACATATGAAAACCAATATTATTATGATAAAGATTAA ATACAGGGATAATTACTTTTTCTTAAAAATTGTCTTTAAAAGAAT



consensusID : consensus_10254#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 307
fasta sequence
                              [ATTATTATCATNCAATANAAGTACTTNGGAAAACAAAATATAGGCAATANTGGAACCATTTGTACAAGTATTCTGTGGTATTGATAGCGAATGGGACTGCAAACTATCACAGGAGNAAGGAATTGNANANTGTATGTTGCATGAAANATAAAACTTGCATGCNTNTGATGGNTACAACCTGGTANNTCATTCTTTGANTCCCAACGGTACTGGAGGANTANCATTTACAACTTGNCGNTGATGTNTTGGCCTTTGGAGTCCTGCACAAGCAGTAGCCATGAAAACACAACATCAGNAAGCATCTTCA]

[+] EMBL SM791                [ATTATTATCATNCAATANAAGTACTTNGGAAAACAAAATATAGGCAATANTGGAACCATTTGTACAAGTATTCTGTGGTATTGATAGCGAATGGGACTGCAAACTATCACAGGAGNAAGGAATTGNANANTGTATGTTGCATGAAANATAAAACTTGCATGCNTNTGATGGNTACAACCTGGTANNTCATTCTTTGANTCCCAACGGTACTGGAGGANTANCATTTACAACTTGNCGNTGATGTNTTGGCCTTTGGAGTCCTGCACAAGCAGTAGCCATGAAAACACAACATCAGNAAGCATCTTCA]


>consensus_10254#3 ATTATTATCATNCAATANAAGTACTTNGGAAAACAAAATATAGGCAATANTGGAACCATT TGTACAAGTATTCTGTGGTATTGATAGCGAATGGGACTGCAAACTATCACAGGAGNAAGG AATTGNANANTGTATGTTGCATGAAANATAAAACTTGCATGCNTNTGATGGNTACAACCT GGTANNTCATTCTTTGANTCCCAACGGTACTGGAGGANTANCATTTACAACTTGNCGNTG ATGTNTTGGCCTTTGGAGTCCTGCACAAGCAGTAGCCATGAAAACACAACATCAGNAAGC ATCTTCA



consensusID : consensus_10254#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 251
fasta sequence
                              [ATAAAGTATATNTNATTTATTCNTTATAGNGTACACTTNCATTTACGTTTTACTATTAAAAGCATTGACATTCATAATAATATAAAGTATTAANGTACCAGTGTNCTCATTATTATTATTATCATTCAATAAAGTACTTTGGCAAACAAACTATAGGCAANANTGGANCCACCGCACANGTATCCTTTGNTATTGCCTAGAGATGGNACTGANACTATCACAGNAGNAAGNAATTGNATCANGTATGTCGC]

[+] EMBL SM7021               [ATAAAGTATATNTNATTTATTCNTTATAGNGTACACTTNCATTTACGTTTTACTATTAAAAGCATTGACATTCATAATAATATAAAGTATTAANGTACCAGTGTNCTCATTATTATTATTATCATTCAATAAAGTACTTTGGCAAACAAACTATAGGCAANANTGGANCCACCGCACANGTATCCTTTGNTATTGCCTAGAGATGGNACTGANACTATCACAGNAGNAAGNAATTGNATCANGTATGTCGC]


>consensus_10254#4 ATAAAGTATATNTNATTTATTCNTTATAGNGTACACTTNCATTTACGTTTTACTATTAAA AGCATTGACATTCATAATAATATAAAGTATTAANGTACCAGTGTNCTCATTATTATTATT ATCATTCAATAAAGTACTTTGGCAAACAAACTATAGGCAANANTGGANCCACCGCACANG TATCCTTTGNTATTGCCTAGAGATGGNACTGANACTATCACAGNAGNAAGNAATTGNATC ANGTATGTCGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10254#1      ------------------------------------------------------------
consensus_10254#2      ------------------------------------------------------------
consensus_10254#3      ------------------------------------------------------------
consensus_10254#0      TTTTATAAAGTATATTTTATTAATTCTTATAGAGTACACTTTCATTTACGTTTTACTATT 60
consensus_10254#4      ------------------------------------------------------------
                                                                                   

consensus_10254#1      ----------------------------------------------TACTCATTAT-TAT 13
consensus_10254#2      ---------------------------------------GAGGCCAGACCCGGACTANAT 21
consensus_10254#3      ----------------------------------------------------------AT 2
consensus_10254#0      AAAAGCATTGAAATTCATAATAATATAAAGTATTAAAGTACCAGTGTACTCATTAT-TAT 119
consensus_10254#4      ------------------------------------------------------------
                                                                                   

consensus_10254#1      TATTATCATTCAATAAA-GTACTTTGGAAAACAAAATATAGGCAAAAATGGAACCATTTG 72
consensus_10254#2      TATTATCATTCAATAAA-GTACTTTGGAAAACAAAATATAGGCAAAAATGGAACCATTTG 80
consensus_10254#3      TATTATCATNCAATANAAGTACTTNGGAAAACAAAATATAGGCAATANTGGAACCATTTG 62
consensus_10254#0      TATTATCATTCAATAAA-GTACTTTGGAAAACAAAATATAGGCAAAAATGGAACCATTTG 178
consensus_10254#4      -------------------------------------ATAAAGTATATNTNATTTATTCN 23
                                                            ***    * *    *   ***  

consensus_10254#1      TACAAGTATTCTTTGCTATTGATAGAGA-TGGAACTG-AAACTATCACAGTAGAA--GAA 128
consensus_10254#2      TACAAGTATTCTTTGCTATTGATAGAGA-TGGAACTG-AAACTATCACAGTAGAA--GAA 136
consensus_10254#3      TACAAGTATTCTGTGGTATTGATAGCGAATGGGACTGCAAACTATCACAGGAGNAAGGAA 122
consensus_10254#0      TACAAGTATTCTTTGCTATTGATAGAGA-TGGAACTG-AAACTATCACAGTAGAA--GAA 234
consensus_10254#4      TTATAGNGTACACTTNCATTTACGTTT--TACTATTAAAAGCATTGACATTCATA----A 77
                       *   **  * *  *   *** *       *   * *  ** *  * ***     *    *

consensus_10254#1      TTGAAAAA-GTATGTTGCTGAAAATA---AACTTG-ATG-ATATGATGGTTACAAAATGG 182
consensus_10254#2      TTGAAAAA-GTATGTTGCTGAAAATA---AACTTG-ATG-ATATGATGGTTACAAAATGG 190
consensus_10254#3      TTGNANANTGTATGTTGCATGAAANATAAAACTTGCATGCNTNTGATGGNTACAACCTGG 182
consensus_10254#0      TTGAAAAA-GTATGTTGCTGAAAATA---AACTTG-ATG-ATATGATGGTTACAAAATGG 288
consensus_10254#4      TAATATAAAGTAT------TAANGTA-----CCAGTGTNCTCATTATTATTATTATCATT 126
                       *   * *  ****        *   *     *  *  *     * **   **  *     

consensus_10254#1      -AAATCATTATTTGAT-CCCAAAGGTACTGGAAGAATAACATTTAAAACTTTTTGT-GAT 239
consensus_10254#2      -AAATCATTATTTGAT-CCCAAAGGTACTGGAAGAATAACATTTAAAACTTTTTGT-GAT 247
consensus_10254#3      TANNTCATTCTTTGANTCCCAACGGTACTGGAGGANTANCATTTACAACTTGNCGNTGAT 242
consensus_10254#0      -AAATCATTATTTGAT-CCCAAAGGTACTGGAAGAATAACATTTAAAACTTTTTGT-GAT 345
consensus_10254#4      CAATAAAGTACTTTGG---CAAACAAACTATAGG--CAANANT--GGANCCACCGCACAN 179
                        *    * *  **      ***    ***  * *   *  * *    *      *   * 

consensus_10254#1      GTATTGGGTTT--GAGTCCTGCACAAGCAGTAGCCATGAAAACACAACATCAGCAAGCAT 297
consensus_10254#2      GTATTGGGTTT--GAGTCCTGCACAAGCAGTAGCCATGAAAACACAACATCAGCAAGCAT 305
consensus_10254#3      GTNTTGGCCTTTGGAGTCCTGCACAAGCAGTAGCCATGAAAACACAACATCAGNAAGCAT 302
consensus_10254#0      GTATTGGGTTT--GAGTCCTGCACAAGCAGTAGCCATGAAAACACAACATCAGCAAGCAT 403
consensus_10254#4      GTATC--CTTT---GNTATTGC-CTAGAGATGGNACTGANACTATCACAGNAGNAAGNAA 233
                       ** *     **     *  *** * **   * *   *** *  *  ***  ** *** * 

consensus_10254#1      CTTCATTGAAACTTCATCCAGATGTTGTTGTAATCTATGAACAACTTCCATTAGATAGAC 357
consensus_10254#2      CTTCATTGAAACTTCATCCAGATGTTGTTGTAATCTATGAACAACTTCCATTAGATAGAC 365
consensus_10254#3      CTTCA------------------------------------------------------- 307
consensus_10254#0      CTTCATTGAAACTTCATCCAGATGTTGTTGTAATCTATGAACAACTTCCATTAGATAGAC 463
consensus_10254#4      TTGNATCANGTATGTCGC------------------------------------------ 251
                        *  *                                                       

consensus_10254#1      AAGTCGCTATTAGTAATAAAGCAATTGAACTATTAACATCTTCAAAGAAATTCGATGAGA 417
consensus_10254#2      AAGTCGCTATTAGTAATAAAGCAATTGAACTATTAACATCTTCAAAGAAATTCGATGAGA 425
consensus_10254#3      ------------------------------------------------------------
consensus_10254#0      AAGTCGCTATTAGTAATAAAGCAATTGAACTATTAACATCTTCAAAGAAATTCGATGAGA 523
consensus_10254#4      ------------------------------------------------------------
                                                                                   

consensus_10254#1      AAGATCAAGCTGTTCAATTGAAACAATGGTTAGATATCACTTATGGTAAAGCATGGCACA 477
consensus_10254#2      AAGATCAAGCTGTTCAATTGAAACAATGGTTAGATATCACTTATGGTAAAGCATGGCACA 485
consensus_10254#3      ------------------------------------------------------------
consensus_10254#0      AAGATCAAGCTGTTCAATTGAAACAATGGTTAGATATCACTTATGGTAAAGCATGGCACA 583
consensus_10254#4      ------------------------------------------------------------
                                                                                   

consensus_10254#1      TTGTCATAGTTAAAGGATCATTTTGGAGTAGTTATTCACATAGTGCTAATAAATGTTTTA 537
consensus_10254#2      TTGTCATAGTTAAAGGATCATTTTGGAGTAGTTATTCACATAGTGCTAATAAATGTTTTA 545
consensus_10254#3      ------------------------------------------------------------
consensus_10254#0      TTGTCATAGTTAAAGGATCATTTTGGAGTAGTTATTCACATAGTGCTAATAAATGTTTTA 643
consensus_10254#4      ------------------------------------------------------------
                                                                                   

consensus_10254#1      TATTTCGTGTACGTGATGTATCTTATCTTGTATGGAGAACACCAGATGAAGAAATAACCA 597
consensus_10254#2      TATTTCGTGTACGTGATGTATCTTATCTTGTATGGAGAACACCAGATGAAGAAATAACCA 605
consensus_10254#3      ------------------------------------------------------------
consensus_10254#0      TATTTCGTGTACGTGATGTATCTTATCTTGTATGGAGAACACCAGATGAAGAAATAACCA 703
consensus_10254#4      ------------------------------------------------------------
                                                                                   

consensus_10254#1      GTGCATAAATAAATAATTAGATAACTTGAAGAGAAACAAACAATTTAAAAAGATAGTTAA 657
consensus_10254#2      GTGCATAAATAAATAATTAGATAACTTGAAGAGAAACAAACAATTTAAAAAGATAGTTAA 665
consensus_10254#3      ------------------------------------------------------------
consensus_10254#0      GTGCATAAATAAATAATTAGATAACTTGAAGAGAAACAAACAATTTAAAAAGATAGTTAA 763
consensus_10254#4      ------------------------------------------------------------
                                                                                   

consensus_10254#1      CAGTAAATGCTTTGTTAAAACATATGAAAAC--CAATATTATTATGATAAAGATAAAATA 715
consensus_10254#2      CAGTAAATGCTTTGTTAAAACATATGAAAAC--CAATATTATTATGATAAAGATTAAATA 723
consensus_10254#3      ------------------------------------------------------------
consensus_10254#0      CAGTAAATGCTTTGTTAAAACATATGAAAACGGCACAGATCTACTGCTGTCAGGGATACA 823
consensus_10254#4      ------------------------------------------------------------
                                                                                   

consensus_10254#1      CAGGGATAATTACTTTTTCTTAAAAAAAAAGAAAAAAAAAAAANAAACATGCCATGCAGC 775
consensus_10254#2      CAGGGATAATTACTTTTTCTTAAAAATTGTCTTTAAAAGAAT------------------ 765
consensus_10254#3      ------------------------------------------------------------
consensus_10254#0      ACAGCTTGACACTTCAGTTCAAGATATCGATGGATTCAATGAGGTGCATTGCTTTGTCAC 883
consensus_10254#4      ------------------------------------------------------------
                                                                                   

consensus_10254#1      TGCATTAC---------------------------------------------------- 783
consensus_10254#2      ------------------------------------------------------------
consensus_10254#3      ------------------------------------------------------------
consensus_10254#0      TAGACGGAATCTGACGCCACACAATGAAGGAGAGTGGATAGGGCGCAAGTGCTAAGGGTC 943
consensus_10254#4      ------------------------------------------------------------
                                                                                   

consensus_10254#1      -----------------------------------------------------
consensus_10254#2      -----------------------------------------------------
consensus_10254#3      -----------------------------------------------------
consensus_10254#0      TCATCAATAAATGTTTTTATTATTTGTAAAAAAAAAAAAAAAAAAAAAAAAAA 996
consensus_10254#4      -----------------------------------------------------
                                                                            




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)