These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10262#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence [TTGGCTTGTCAGTTAGCTGTGATGGTGAATTAGCCTGTACTGTTGGTGATGATAAAACTGCCAAGGTTTTTGATGTTATTAATTTTGATATGATTAGTATGATGAAATTAGATTTTTCACCTAGTGGGTGTTGTTTCATTTATACTCCAAAGGATGAGGTCAATGCAGTTGCAATATCCGATCAAGATAGTTCTAAAATTCGGATATTTGATGCACGTAGCAAAGGTGAATTATTACATACAATTGAAAAATTACATGAAGCGCCTATAGTATGTTTAGCGTTTAATCCTGTATATGCATGTGCATTAAGCGCTGATTCCGACGGTATGCTAGAATGTTGGTCTGGTCCAAAGAATAATTACAGTTTCCCACAGACACTTAAATGGGAATATAAATCAGATACAGATTTTTATTGTTTACTAGCTGAAAAAACCTTCGCATTCAGTGTTGTGTTCTCTCCATCTGGTGAGATTTTAGCAGTACTTGGAGCAGATCGAAAAATTCGATTATTTCGTTTTTCTACTGGAAAATTAATTCGTGTTTATGATGAAAGCCTTCAACAATATTCCAATTTACAACAGACTAAACAA] [+] EMBL AI977617 [TTGGCTTGTCAGTTAGCTGTGATGGTGAATTAGCCTGTACTGTTGGTGATGATAAAACTGCCAAGGTTTTTGATGTTATTAATTTTGATATGATTAGTATGATGAAATTAGATTTTTCACCTAGTGGGTGTTGTTTCATTTATACTCCAAAGGATGAGGTCAATGCAGTTGCAATATCCGATCAAGATAGTTCTAAAATTCGGATATTTGATGCACGTAGCAAAGGTGAATTATTACATACAATTGAAAAATTACATGAAGCGCCTATAGTATGTTTAGCGTTTAATCCTGTATATGCATGTGCATTAAGCGCTGATTCCGACGGTATGCTAGAATGTTGGTCTGGTCCAAAGAATAATTACAGTTTCCCACAGACACTTAAATGGGAATATAAATCAGATACAGATTTTTATTGTTTACTAGCTGAAAAAACCTTCGCATTCAGTGTTGTGTTCTCTCCATCTGGTGAGATTTTAGCAGTACTTGGAGCAGATCGAAAAATTCGATTATTTCGTTTTTCTACTGGAAAATTAATTCGTGTTTATGATGAAAGCCTTCAACAATATTCCAATTTACAACAGACTAAACAA] consensusID : consensus_10262#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 511 fasta sequence [TGAAGCAATTTACCTACGTAATATTCCAATAGCTCAATACTACGAAATAAGTTATATGCATAGAAATGTGATAACACACGTTGCCTACTCACAAACTCACTATTTGATGACATGTAGCAATGATGGTCATCTTAAGTTTTGGCGGAAAGCTGATGGTGTTGGACTAGAGTTTATCAAACACTACCGAGCACATTTAGGAGCTATTCTTGGCTTGTCAGTTAGCTGTGATGGTGAATTAGCCTGTACTGTTGGTGATGATAAAACTGCCAAGGTTTTTGATGTTATTAATTTTGATATGATTAGTATGATGAAATTAGATTTTTCACCTAGTGGGTGTTGTTTCATTTATACTCCAAAGGATGAGGTCACTGCAGTTGCAATGTATGCTACTTGTTAGTTTATTTGTTTATTCATCCAATCTACTATTTATTAAATACTAATTTTTTCTGAAACCGGTATATTTGGACTTTATATTAATATTGTTGTACAGCGCTTATGAACACTAAAATTT] [+] EMBL CD079648 [TGAAGCAATTTACCTACGTAATATTCCAATAGCTCAATACTACGAAATAAGTTATATGCATAGAAATGTGATAACACACGTTGCCTACTCACAAACTCACTATTTGATGACATGTAGCAATGATGGTCATCTTAAGTTTTGGCGGAAAGCTGATGGTGTTGGACTAGAGTTTATCAAACACTACCGAGCACATTTAGGAGCTATTCTTGGCTTGTCAGTTAGCTGTGATGGTGAATTAGCCTGTACTGTTGGTGATGATAAAACTGCCAAGGTTTTTGATGTTATTAATTTTGATATGATTAGTATGATGAAATTAGATTTTTCACCTAGTGGGTGTTGTTTCATTTATACTCCAAAGGATGAGGTCACTGCAGTTGCAATGTATGCTACTTGTTAGTTTATTTGTTTATTCATCCAATCTACTATTTATTAAATACTAATTTTTTCTGAAACCGGTATATTTGGACTTTATATTAATATTGTTGTACAGCGCTTATGAACACTAAAATT ] [+] EMBL AA819936 [TGAAGCAATTTACCTACGTAATATTCCAATAGCTCAATACTACGAAATAAGTTATATGCATAGAAATGTGATAACACACGTTGCCTACTCACAAACTCACTATTTGATGACATGTAGCAATGATGGTCATCTTAACTTTTGGCGGAAAGCTGATGGTATTGGACTAGAGTTTATCAAACACT ] [-] EMBL CD073910 [ GAAGCAATTTACCTACGTAATATTCCAATAGCTCAATACTACGAAATAAGTTATATGCATAGAAATGTGATAACACACGTTGCCTACTCACAAACTCACTATTTGATGACATGTAGCAATGATGGTCATCTTAAGTTTTGGCGGAAAGCTGATGGTGTTGGACTAGAGTTTATCAAACACTACCGAGCACATTTAGGAGCTATTCTTGGCTTGTCAGTTAGCTGTGATGGTGAATTAGCCTGTACTGTTGGTGATGATAAAACTGCCAAGGTTTTTGATGTTATTAATTTTGATATGATTAGTATGATGAAATTAGATTTTTCACCTAGTGGGTGTTGTTTCATTTATACTCCAAAGGATGAGGTCACTGCAGTTGCAATGTATGCTACTTGTTAGTTTATTTGTTTATTCATCCAATCTACTATTTATTAAATACTAATTTTTTCTGAAACCGGTATATTTGGACTTTATATTAATATTGTTGTACAGCGCTTATAAACACTAAAATTT] consensusID : consensus_10262#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 410 fasta sequence [GCAAGCAGGATGGTTGATCTCTTCATGTGTTGTAGTAATCCTGTGCTTTTTGAGGTGAGTTGTATACTTCCTATTCTCTCAGCTTTTTGACTTTTACATTTGTCATTGAAGCGTTATCTATAACCAATGCACTACACAAATCTAAATGTCTACGTGTTCGCAAGTTTTTATCGTGTTTAAAAGCTTACTTTGCTTTGGGAGAGTGAAGAGCAGGAAGACAATAAAAGTTTGATTGGTAGAATGTCTAGTGGTACGTCATCGACTCTCTTATATGTTCTTTTTTGAAAAGTTACCACTAGAATTGATCCAAGTGACTTCGAAATTACGGAGAAATACGAGCTTGTTGGTGTTTTCCCTTTTTTAATGCTTCTTTTTCAGGGTCAAATGTCGCTCTTATACTTCGCTGCTGG] [+] EMBL CD068954 [GCAAGCAGGATGGTTGATCTCTTCATGTGTTGTAGTAATCCTGTGCTTTTTGAGGTGAGTTGTATACTTCCTATTCTCTCAGCTTTTTGACTTTTACATTTGTCATTGAAGCGTTATCTATAACCAATGCACTACACAAATCTAAATGTCTACGTGTTCGCAAGTTTTTATCGTGTTTAAAAGCTTACTTTGCTTTGGGAGAGTGAAGAGCAGGAAGACAATAAAAGTTTGATTGGTAGAATGTCTAGTGGTACGTCATCGACTCTCTTATATGTTCTTTTTTGAAAAGTTACCACTAGAATTGATCCAAGTGACTTCGAAATTACGGAGAAATACGAGCTTGTTGGTGTTTTCCCTTTTTTAATGCTTCTTTTTCAGGGTCAAATGTCGCT ] [+] EMBL CD084680 [ gTTTGTCATCGAAGCGTCATCTATAACCAATGCACTACACAAATCTAAATGTCTACGTGTTCGCAAGTTTTTATCGTGTTTAAAAGCTTACTTTGCTTTGGGAGAGTGAAGAGCAGGAAGACAATAAAAGTTTGATTGGTAGAATGTCTAGTGGTACGTCATCGACTCTCTTATATGTTCTTTTTTGAAAAGTTACCACTAGAATTGATCCAAGTGACTTCGAAATTACGGAGAAATACGAGCTTGTAGGTGTTTTCCCTTTTTTAATGCTTCTTTTTCAGGGTCAAATGTCGCTCTTATACTTCGCTGCTGG] consensusID : consensus_10262#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 323 fasta sequence [AAAGAAGCATTAAAAAAGGGAAAACACCAACAAGCTCGTATTTCTCCGTAATTTCGAAGTCACTTGGATCAATTCTAGTAGTAACACTAGACATTCTACCAATCAAACTTTTATTGTCTTCCTGCTCTTCACTCTCCTAAAGCAAAGTAAGCTTTTAAACACGATAAAAACTTGCGAACACGTAGACCACGACGGACCGACGATAATGATCAAAATGAACCTAGAGAAGATACTGTTGGTCCTTTACCATCTGAAATGATGCAGTTTCAGGAAGATGTCAGCGAAAATGGTGATTCTGTAGCAATCCCTAAAAAGAAACGTAG] [-] EMBL CD192544 [AAAGAAGCATTAAAAAAGGGAAAACACCAACAAGCTCGTATTTCTCCGTAATTTCGAAGTCACTTGGATCAATTCTAGTAGTAACACTAGACATTCTACCAATCAAACTTTTATTGTCTTCCTGCTCTTCACTCTCCTAAAGCAAAGTAAGCTTTTAAACACGATAAAAACTTGCGAACACGTAGACCACGACGGACCGACGATAATGATCAAAATGAACCTAGAGAAGATACTGTTGGTCCTTTACCATCTGAAATGATGCAG ] [+] EMBL CD192066 [ ACCGACGATAATGATCAAAATGAACCTAGAGAAGATACTGTTGGTCCTTTACCATCTGAAATGATGCAGTTTCAGGAAGATGTCAGCGAAAATGGTGATTCTGTAGCAATCCCTAAAAAGAAACGTAG] [+] EMBL CD192680 [ ACCGACGATAATGATCAAAATGAACCTAGAGAAGATACTGTTGGTCCTTTACCATCTGAAATGATGCAGTTTCAGGAAGATGTCAGCGAAAATGGTGATTC ] [+] EMBL CD192299 [ ACCGACGATAATGATCAAAATGAACCTAGAGAAGATACTGTTGGTCCTTTACCATCTGAAATGATGCAGTTTCAGGAAGATGTCAGCGAAAATGGTGATTC ] [+] EMBL CD192455 [ ACCGACGATAATGATCAAAATGAACCTAGAGAAGATACTGTTGGTCCTTTACCATCTGAAATGATGCAGTTTCAGGAAGATGTCAGCGAAAATGGTGATTC ] [+] EMBL CD191939 [ ACCGACGATAATGATCAAAATGAACCTAGAGAAGATACTGTTGGTCCTTTACCATCTGAAATGATGCAGTTTCAGGAAGATGTCAGCGAAAATGGTGATTC ] consensusID : consensus_10262#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 195 fasta sequence [AGAATCACCATTTTCGCTGACATCTTCCTGAAACTGCATCATTTCAGATGGTANAGGACCAACAGTATCTTCTCTAGGTTCATTTTGATCATTATCGTCGGCCTCGTTGGAATTTTCGGNTGGCAAAGGGCCGATGGCTTCATCATTTATCAGACATGATCAATTGATCGGGCCAACTGACCTTGAGATGACGTT] [+] EMBL CD071508 [AGAATCACCATTTTCGCTGACATCTTCCTGAAACTGCATCATTTCAGATGGTANAGGACCAACAGTATCTTCTCTAGGTTCATTTTGATCATTATCGTCGGCCTCGTTGGAATTTTCGGNTGGCAAAGGGCCGATGGCTTCATCATTTATCAGACATGATCAATTGATCGGGCCAACTGACCTTGAGATGACGTT] consensusID : consensus_10262#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 193 fasta sequence [TGACCAAAGATAACTCATTAATGCTAATCGACTGCAGACAGGATCAACCTATTCGCAAGGTCAAAATGGATTTGAAATTAAATTCATTTTCATGGAATCCAATGGAACCATTCATGCCACGACGGACCGACGATAATGATCAAAATGAACCTAGAGAAGATACTGTTGGTCCTTTACCATCTGAAATGATGCA] [+] EMBL CD192597 [TGACCAAAGATAACTCATTAATGCTAATCGACTGCAGACAGGATCAACCTATTCGCAAGGTCAAAATGGATTTGAAATTAAATTCATTTTCATGGAATCCAATGGAACCATTCATGCCACGACGGACCGACGATAATGATCAAAATGAACCTAGAGAAGATACTGTTGGTCCTTTACCATCTGAAATGATGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10262#0 TTGGCTTGTCAGTTAGCTGTGATGGTGAATTAGCCTGTACTGTTGGTGATGATAAAACTG 60 consensus_10262#1 ----------------------------------------------------TGAAGC-- 6 consensus_10262#3 ------------------------------------------------------------ consensus_10262#5 ------------------------------------------------------------ consensus_10262#4 ------------------------------------------------------------ consensus_10262#2 ------------------------------------------------------------ consensus_10262#0 CCAAGGTTTTTGATGTTATTAATTTTGATATGATTAGTATGATGAAATTAGATTTTTCAC 120 consensus_10262#1 ---AATTTACCTACGTAAT--ATTCCAATA-GCTCAATACTACGAAAT-AAGTTATATGC 59 consensus_10262#3 ------------------------------------------------------------ consensus_10262#5 ------------------------------------------------------------ consensus_10262#4 ------------------------------------------------------------ consensus_10262#2 ------------------------------------------------------------ consensus_10262#0 CTAGTGGGTGTTGTTTCATTTATACTCCAAAGGATGAGGTCA--ATGCAGTTGCAATATC 178 consensus_10262#1 ATAG-AAATGTGATAACACACGT-TGCCTACTCACAAACTCACTATTTGATGACATGTAG 117 consensus_10262#3 ----------------------------------------AAAGAAGCATTAAAAAAGGG 20 consensus_10262#5 ------------------------------------------------------------ consensus_10262#4 ------------------------------------------------------------ consensus_10262#2 -------------------------------------GCAAGCAGGATGGTTGATCTCTT 23 consensus_10262#0 CGATCAAGATAGTTCTAAAATTCGGATATTTGATGCACGTAGCAAAGGTGAATT-ATTAC 237 consensus_10262#1 CAATGATGGTCATCTTAAGTTTTGGCGGAAAGCTGATGGTGTTGGACTAGAGTTTATCAA 177 consensus_10262#3 AAAACACCAACAAGCTCGTATTTCTCCGTAATTTCGAAGTCACTTGGATCAATTCTAGTA 80 consensus_10262#5 ---------------------------------------TGACCAAAGATAACTC----A 17 consensus_10262#4 ------------------------------------------------------------ consensus_10262#2 CATGTGTTGTAGTAATCCTGTGCTTTTTGAGGTGAGTTGTATACTTCCTATTCTCTCAGC 83 consensus_10262#0 ATACAATTGAAAAATTACATGAAGCGCCTATAGTATGTTTAGCGTTTAATCCTGTATATG 297 consensus_10262#1 ACACTACCGAG----CACATTTAGGAGCTATTCTTGGCTTGTCAGTTAGCTGTGATGGTG 233 consensus_10262#3 GTAACACTAGACA-TTCTACCAATCAAACTTTTATTGTCTTCCTGCTCTTCACTCTCCTA 139 consensus_10262#5 TTAATGCTAATCG-ACTG--CAGACAGGATCAACCTATTCGCAAGGTCAAAATGGATTTG 74 consensus_10262#4 ----------------------------------AGAATCACCATTTTCGCTGACATCTT 26 consensus_10262#2 TTTTTGACTTTTACATTTGTCATTGAAGCGTTATCTA-TAACCAATGCACTACACAAATC 142 * consensus_10262#0 CATGTGCATTAAGCGCTGATTCCGACGGTA-TGCTAGAATGTTGGTCTGGTCCAAAGAAT 356 consensus_10262#1 AATTAGCCTGTACTGTTGGTGATGATAAAACTGCCAAGGTTTT----TGATGTT---ATT 286 consensus_10262#3 AAGCAAAGTAAGCTTTTAAACACGATAAAAACTTGCGAACACG---------------TA 184 consensus_10262#5 AAATTAAATTCATTTTCATGGAATCCAA-----TGGAACCATT---------------CA 114 consensus_10262#4 CCTGAAACTGCATCATTTCAGATGGTANAGGACCAACAGTATCTTCTCTAGGTTCATTTT 86 consensus_10262#2 TAAATGTCTACGTGTTCGCAAGTTTTTATCGTGTTTAAAAGCTTACTTTGCTTT---GGG 199 * consensus_10262#0 AATTACAGTTTCCCACAGACACTTAAATGGGAATATAAATCAGATACAGATTTTTA-TTG 415 consensus_10262#1 AATTTTGATATGATTAGTATGATGAAATTAGATTTTTCACCTAGTGGGTGTTGTT--TCA 344 consensus_10262#3 GACCACGACGGACCGACGATAATGA--TCAAAATGAACCTAGAGAAGATACTGTTGGTCC 242 consensus_10262#5 TGCCACGACGGACCGACGATAATGA--TCAAAATGAACCTAGAGAAGATACTGTTGGTCC 172 consensus_10262#4 GATCATTATCGTCGGCCTCGTTGGAATTTTCGGNTGGCAAAGGGCCGATGGCTTCA-TCA 145 consensus_10262#2 AGAGTGAAGAGCAGGAAGACAATAAAAGTTTGATTGGTAGAATGTCTAGTGGTACG-TCA 258 * * consensus_10262#0 TTTACTAGCTGAAAAAACCTTCGCATTCAGTGTTGTGTTCTCTCCATCTGGTGAGATTTT 475 consensus_10262#1 TTTA-TACTCCAAAGGATGAGGTCACT-GCAGTTGCAATGTATGCTACTTGTTAG--TTT 400 consensus_10262#3 TTTACCATCTGAAATGATGCAGTTTCAGGAAGATG---TCAGCGAAAATGGTGATTCTGT 299 consensus_10262#5 TTTACCATCTGAAATGATGCA--------------------------------------- 193 consensus_10262#4 TTTATCA---GACATGATCAATTGATCGGGCCAACTGACCTTGAGATGACGTT------- 195 consensus_10262#2 TCGACTCTCTTATATGTTCTTTTTT----GAAAAGTTACCACTAGAATTGATCCAAGTGA 314 * * * * consensus_10262#0 AGCAGTACTTGGAGCAGATCGAAAAATT--CGATTATTTCGTTTTTCTACTGGAAAATTA 533 consensus_10262#1 ATTTGTTTATTCATCCAATCTACTATTTATTAAATACTAATTTTTTCTGAAACCGGTATA 460 consensus_10262#3 AGCAATCCCTAAAAAGAAACGTAG------------------------------------ 323 consensus_10262#5 ------------------------------------------------------------ consensus_10262#4 ------------------------------------------------------------ consensus_10262#2 CTTCGAAATTACGGAGAAATACGAGCTTGTTGGTGTTTTCCCTTTTTTAATGCTTCTTTT 374 consensus_10262#0 ATTCGTGTTTATGATGAAAGCCTTCAACAATATTCCAATTTACAACAGACTAAACAA 590 consensus_10262#1 TTTGGACTTTATATTAATATTGTTGTACAGCGCTTATGAACACTAAAATTT------ 511 consensus_10262#3 --------------------------------------------------------- consensus_10262#5 --------------------------------------------------------- consensus_10262#4 --------------------------------------------------------- consensus_10262#2 TCAGGGTCAAATGTCGCTCTTATACTTCGCTGCTGG--------------------- 410 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||