These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10263#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 787 fasta sequence [CCTGGCTCCTCTATGTCGGAGTATGGCATATTATCACATTGATTGGAAACCAAAACCGTTTCCCTGCACAAAGGCCGAACGGGAAGCGGCTGCTAAACGCTACAATCTCTTGCCTTCTGATTACAAACCATTTGAGAATGATGGTTTAGCACCGGGGGACTATTTCTACGTAGAACCATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTAAGCCGTGGTTCATTTATTTCACTTGTAATTAAGGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGGTAAGTAATATAAATTTAAGACTCTGTTTTGGTTTTATGATTAAGTTAGTTGTAATAATTCCACGACCATTCGAAAAATGAGACTAGGAACTTGAAATTTCATGACAACTCCGATCCCTAATTTTTTAGAAAGTAGATAACGGGAAATCTTCAGCAACTTCTAGGCGAACTTATAGCTACACTTTGAATATCAACCATCACGAATTTGCCTGTCGACTTATAACACAGCANAAAAAGCTGAGACAGCTAGGTAGTAGAACCCTGAAGCAGTAGTTTTGAGTTTAACTAGCAGATTCGGGCCGCTCCAATGCTATAACCTGAGTAGTCAGC] [-] EMBL CD135534 [CCTGGCTCCTCTATGTCGGAGTATGGCATATTATCACATTGATTGGAAACCAAAACCGTTTCCCTGCACAAAGGCCGAACGGGAAGCGGCTGCTAAACGCTACAATCTCTTGCCTTCTGATTACAAACCATTTGAGAATGATGGTTTAGCACCGGGGGACTATTTCTACGTAGAACCATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGAC ] [+] EMBL CD078958 [ CGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTAAGCCGTGGTTCATTTATTTCACTTGTAATTAAGGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGGTAAGTAATATAAATTTAAGACTCTGTTTTGGTTTTATGATTAAGTTAGTTGTAATAATTCCACGACCATTCGAAAAATGAGACTAGGAACTTGAAATTTCATGACAACTCCGATCCCTAATTTTTTAGAAAGTAGATAACGGGAAATCTTCAGCAACTTCTAGGCGAACTTATAGCTACACTTTGAATATCAACCATCACGAATTTGCCTGTCGACTTATAACACAGCANAAAAAGCTGAGACAGCTAGGTAGTAGAACCCTGAAGCAGTAGTTTTGAGTTTAACTAGCAGATTCGGGCCGCTCCAATGCTATAACCTGAGTAGTCAGC] consensusID : consensus_10263#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 584 fasta sequence [CCTCCAGCCAAAATTCGGCACGAGGCTTATGAGACTTCTTGTTGTTAGGACATGCAGTCCCATCCTGGCTCCTCTATGTCGGAGTATGGCATATTATCACATTGATTGGAAACCAAAACCGTATCCCTGCACAAAGGCCGAACGGGAAGCGGCTGCTAAACGCTACAATCTCTTGCCTTCTGATTACAAACCATTTGAGAATGATGGTTTAGCACCGGGGGACTATTTCTATGTAGAACCATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAATACCCACATGCAGTGGACAAAGAAAATCACTATACTTTTGAAAAGCTTGGGTAGATCCATATGTTCGAATAGAAAGCAATAAAATCTT] [+] EMBL CD079680 [CCTCCAGCCAAAATTCGGCACGAGGCTTATGAGACTTCTTGTTGTTAGGACATGCAGTCCCATCCTGGCTCCTCTATGTCGGAGTATGGCATATTATCACATTGATTGGAAACCAAAACCGTATCCCTGCACAAAGGCCGAACGGGAAGCGGCTGCTAAACGCTACAATCTCTTGCCTTCTGATTACAAACCATTTGAGAATGATGGTTTAGCACCGGGGGACTATTTCTATGTAGAACCATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAATACCCACATGCAGTGGACAAAGAAAATCACTATACTTTTGAAAAGCTTGGGTAGATCCATATGTTCGAATAGAAAGCAATA ] [-] EMBL CD073940 [ CTTGTTGTTAGGACATGCAGTCCCATCCTGGCTCCTCTATGTCGGAGTATGGCATATTATCACATTGATTGGAAACCAAAACCGTATCCCTGCACAAAGGCCGAACGGGAAGCGGCTGCTAAACGCTACAATTTCTTGCCTTTTGATTACAAACCATTTGAGAATGATGGTTTAGCACCGGGGGACTATTTTTATGTAGAACCATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATTTGAAAGACGAGACTTTAATGACCCGCAACAGTTTGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCCCCGTTATTTGGCCTTTGGTTTTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAATACCCACATGCAGTGGACAAAGAAAATCCCTATACTTTTGAAAAGCTTGGGTAGATCCATATGTTCGAATAGAAAGCAATAA ] [+] EMBL CD082635 [ GTTGTTAGGACATGCAGTCCCATCCTGGCTCCTCTATGTCGGAGTATGGCATATTATCACATTGATTGGAAACCAAAACCGTATCCCTGCACAAAGGCCGAACGGGAAGCGGCTGCTAAACGCTACAATCTCTTGCCTTCTGATTACAAACCATTTGAGAATGATGGTTTAGCACCGGGGGACTATTTCTATGTAGAACCATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAATACCCACATGCAGTGGACAAAGAAAATCACTATACTTTTGAAAAGCTTGGGTAGATCCATATGTTCGAATAGAAAGCAATA ] [+] EMBL AI977724 [ CTCCTCTATGTCGGGGTATGGCATATTATCACATTGATTGGAAACCAAAACCGTATCCCTGCACAAAGGCCGAACGGGAAGCGGCTGCTAAACGCTACAATCTCTTGCCTTCTGATTACAAACCATTTGAGAATGATGGTTTAGCACCGGGGGACTATTTCTATGTAGAACCATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAATACCCACATGCAGTGGACAAAGAAAATCACTATACTTTTGAAAAGCTTGGGTAGATCCATATGTTCGAATAGAAAGCAATAAAATCTT] [-] EMBL CD135360 [ TATGGCATATAATCACATTGATTGGAAACCAAAACCGTATCCCTGCACAAAGGCCGAACGGGAAGCGGCTGCTAAACGCTACAATCTCTTGCCTTCTGATTACAAACCATTTGAGAATGATGGTTTAGCACCGGGGGACTATTTCTACGTAGAACCATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAATACCCACATGCAGTGGACAAAGAAAATCACTATACTTTTGA ] [+] EMBL CD079180 [ gCCTGCACAAAGGCCGAACGGGAAGCGGCTGCTAAACGCTACAATCTCTTGCCTTCTGATTACAAACCATTTGAGAATGATGGTTTAGCACCGGGGGACTATTTCTACGTAGAACCATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAATACCCACATGCAGTGGACAAAGAAAATCACTATACTTTTGAAAAGCTTGGGTAGATCCATATGTTCGAATAGAAAGCAATA ] [-] EMBL CD135998 [ CGCTACAATCTCTCGCCTTCTGATTACAAACCATATGAGAAAGATGGTCAAGCACCGGGGGACTATTTCTACGTAGAACCATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAATA ] [-] EMBL CD135990 [ CTATTTCTATGTAGAACCATATAGTACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGGCTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCGCCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAATA ] [+] EMBL CD135937 [ CCATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAAT ] [-] EMBL CD135983 [ CATATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAATA ] [+] EMBL CD135392 [ tctacTCTGAAAGA GAGACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCTGCGAAATTAAAGGAAATTTTAAAAGGCCAGCCAGTGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGTTCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTCCCGCTGAAAGCGAAACAATACCCACATGCAGTGGACAAAGAAAATCACTATACTTTTG ] consensusID : consensus_10263#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 515 fasta sequence [TTATTGCTTTCTATTCGAACATATGGATCTACCCAAGCTTTTCAAAAGTATAGTGATTTTCTTTGTCCACTGCATGTGGGTATTGTTTCGCTTTCTGTAAAAAGAAGAGGAAAAACAATTAGCAACCGTTTTTGGATAACTAGCTAACGTTTACCTAAATGTCCATGATAACTGCGGCCGTATCATACTATAAGCAGTCTACTTTGTGTTATCACCAATAAGGAAATATACACATCTGTAGTCAAGCCACTTGGTGGACGATGTGGAGGCAAGTGCTAAACTAAATAAGCGAATTTGTTCAGTCAGCTAATGCTCAACGGCTTTCGCAAGGTGTGATTTCGAAACGACCTACTTTATTCAGTTATAGCTTAATGTATAACCCACCACATACCTGACGTTTTCGGGGTCACTCATACATGCACACAATGGTCATTACGAAATACAAATCTGCTGATATAGCTGCCTACTGGCATGTTTTGGCCTAACTTTGACAAAACGCATTTAGTGGTTTTGCG] [+] EMBL CD073412 [TTATTGCTTTCTATTCGAACATATGGATCTACCCAAGCTTTTCAAAAGTATAGTGATTTTCTTTGTCCACTGCATGTGGGTATTGTTTCGCTTTCTGTAAAAAGAAGAGGAAAAACAATTAGCAACCGTTTTTGGATAACTAGCTAACGTTTACCTAAATGTCCATGATAACTGCGGCCGTATCATACTATAAGCAGTCTACTTTGTGTTATCACCAATAAGGAAATATACACATCTGTAGTCAAGCCACTTGGTGGACGATGTGGAGGCAAGTGCTAAACTAAATAAGCGAATTTGTTCAGTCAGCTAATGCTCAACGGCTTTCGCAAGGTGTGATTTCGAAACGACCTACTTTATTCAGTTATAGCTTAATGTATAACCCACCACATACCTGACGTTTTCGGGGTCACTCATACATGCACACAATGGTCATTACGAAATACAAATCTGCTGATATAGCTGCCTACTGGCATGTTTTGGCCTAACTTTGACAAAACGCATTTAGTGGTTTTGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10263#0 ------------------------------------------------------------ consensus_10263#1 CCTCCAGCCAAAATTCGGCACGAGGCTTATGAGACTTCTTGTTGTTAGGACATGCAGTCC 60 consensus_10263#2 ------------------------------------------------------------ consensus_10263#0 ---CCTGGCTCCTCTATGTCGGAGTATGGCATATTATCACATTGATTGGAAACCAAAACC 57 consensus_10263#1 CATCCTGGCTCCTCTATGTCGGAGTATGGCATATTATCACATTGATTGGAAACCAAAACC 120 consensus_10263#2 -----TTATTGCTTTCTATTCGAACATATGGATCTACCCAAGCTTTTCAAAAGTATAGTG 55 * * ** * * * ** ** ** * * ** *** * * consensus_10263#0 GTTTCCCTGCACAAAGGCCGAACGGGAAGCGGCT-GCTAAACGCTACAATCTCTTGCCTT 116 consensus_10263#1 GTATCCCTGCACAAAGGCCGAACGGGAAGCGGCT-GCTAAACGCTACAATCTCTTGCCTT 179 consensus_10263#2 ATTTTCTTTGTCCACTGC-ATGTGGGTATTGTTTCGCTTTCTGTAAAAAGAAGAGGAAAA 114 * * * * * * ** *** * * * *** * * ** * consensus_10263#0 CTGATTACAAACCATTTGAGAATGATGGTTTAGCACCGGGGGACTATTTCTACGTAGAAC 176 consensus_10263#1 CTGATTACAAACCATTTGAGAATGATGGTTTAGCACCGGGGGACTATTTCTATGTAGAAC 239 consensus_10263#2 ACAATTAGCAACCGTTTTTGGATAACTAGCTAACGTT-------TACCTAAATGT----C 163 **** **** *** * ** * ** * ** * * ** * consensus_10263#0 CAT-ATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGA 235 consensus_10263#1 CAT-ATAATACGGAATGCCGCAGCCCATGGGAACCCTATGACTACCCATCTGAAAGACGA 298 consensus_10263#2 CATGATAACTGCGGCCGTATCATACTATAAGCAGTCTACTTTGTGTTATCACCAATAAGG 223 *** **** * * ** * ** * * *** *** ** * * consensus_10263#0 GACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCT 295 consensus_10263#1 GACTTTAATGACCCGCAACAGTTCGACGCTCAACTGTATTTAGCTTCCGGATATAATCCT 358 consensus_10263#2 AAATATACACATCTGTAGT-------CAAGCCACTTGGTGGACGATGTGGAGGCAA--GT 274 * * ** * * * * * * *** * * * *** ** * consensus_10263#0 GCGAAATTAAAGGAA--ATTTTAAAAGGCCAGCCAGTGTAAGCCGTGGTTCATTTATTTC 353 consensus_10263#1 GCGAAATTAAAGGAA--ATTTTAAAAGGCCAGCCAGTGT--------------------- 395 consensus_10263#2 GCTAAACTAAATAAGCGAATTTGTTCAGTCAGCTAATGCTCAACGGCTTTC--------- 325 ** *** **** * * *** * **** * ** consensus_10263#0 ACTTGTAATTAAGGTGGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGT 413 consensus_10263#1 ---------------GGTATATGCTGTTCAAAACGTTTGCACCGTTATTTGGCCTTTGGT 440 consensus_10263#2 -------------GCAAGGTGTGAT-TTCGAAACGAC--CTACTTTATTCAGT-TATAGC 368 * ** * *** ***** * * ***** * * * * consensus_10263#0 TCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTC-CCGCTGGTAAGTA-ATATAAA 471 consensus_10263#1 TCTGCTTATCTCTCGGTCAAATGTATTGCTTCTTTTTC-CCGCTGA-AAGCG-AAACAAT 497 consensus_10263#2 TTAATGTATAACCCA-CCACATACCTGACGTTTTCGGGGTCACTCATACATGCACACAAT 427 * *** * * ** ** * * * ** * ** * * * ** consensus_10263#0 TTTAAG-ACTCTGTTTTGGTTTTATGATTAAGTTAGTTGTAATAATTCCACGACCATTCG 530 consensus_10263#1 ACCCAC-ATGCAGTGGACAAAGAA-AATCACTATACTTTTGAAAAGCTTG-GGTAGATCC 554 consensus_10263#2 GGTCATTACGAAATACAAATCTGCTGATATAGCTGCCTACTGGCATGTTTTGGCCTAACT 487 * * * ** * * * * * consensus_10263#0 AAAAATGAGACTAGGAACTTGAAATTTCATGACAACTCCGATCCCTAATTTTTTAGAAAG 590 consensus_10263#1 ATATGTTCGAATAGAAAGCAATAAAATCTT------------------------------ 584 consensus_10263#2 TTGA---CAAAACGCATTTAGTGGTTTTGCG----------------------------- 515 * * * * consensus_10263#0 TAGATAACGGGAAATCTTCAGCAACTTCTAGGCGAACTTATAGCTACACTTTGAATATCA 650 consensus_10263#1 ------------------------------------------------------------ consensus_10263#2 ------------------------------------------------------------ consensus_10263#0 ACCATCACGAATTTGCCTGTCGACTTATAACACAGCANAAAAAGCTGAGACAGCTAGGTA 710 consensus_10263#1 ------------------------------------------------------------ consensus_10263#2 ------------------------------------------------------------ consensus_10263#0 GTAGAACCCTGAAGCAGTAGTTTTGAGTTTAACTAGCAGATTCGGGCCGCTCCAATGCTA 770 consensus_10263#1 ------------------------------------------------------------ consensus_10263#2 ------------------------------------------------------------ consensus_10263#0 TAACCTGAGTAGTCAGC 787 consensus_10263#1 ----------------- consensus_10263#2 ----------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||