These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10282#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1405 fasta sequence [GCGGTAATCTGAAGAAGGCATTAGTTTGTCGCCATACGGAAATGAAGAAAGCTGTTCAACAGAGTCGTTTCACCAGATTTAAGAGAACTCTCTATAATCCAGAAAAACATGAAATTTTGGGAAGGACTTGCAGAGACTGGGTTTTGATTTTCATATTTTACGTCGTGGCATATACGTTCTTGGCTTTATTCTTCATCGGAATGCTATCAGTTTTTCTGTATGGCTACGTCAGTAAAACAGTTCCAACACTGACTGGGGAACAAAGCATCTTAAGGTTTCAGCCAGGAATAGAACTTGCTGCGAGACCAAACTCTTTTAATACGTTTATCCATGTTGCAACTTTCCAATCCACGATCAACCAACCGTATATTAATAAAGTGGATGAACTGTTTAGTAAATATGGCTCGAAAGGTGTAAATGAAGAGTGCAGTGGACCAGGTTTACATCCACAGAATCCAGATGTCCCCTGTAGCTTCGATCTCAGTGTTTTGGGTGAATGTCAATCAACTGAGAAAACCATATTGGAGGGAAAACTATGTCTTTATTTGAAAATAAATAGAGTCTACGGTTGGTTACCTGATTTGG-AAGATCCTAAATCAATTCCATCACCTGCTATCGAATG-TGGAGGTACAAATGAATTCGATAAAGAGTCCCTTGGTATTGTAAGATACTTTCCGGAACACATAGCACCCAATGGGAAGAAGTATGGTATCATATCAAACAATTATTTTCCCTATTTAAGAATGAATAATTATCAAGCACCATTAGTTG-CTGTACAACTCTCCAATATAACAAGAAATACTGTTGTCCTAGTTGAATGTCGTTTGGT-TGGTTTAAAAAATTCCATCGGT-GGAACAGGTTTTG-AANTTTGTG-TTG-ATGACAAAGATCCNGG-AAAATAAATCNCACTTTAATCTATTGCAAAACATAACATC--TTTTTTAAAAAT-CTGTTTTTACTATTAAAAAAAAGGAAATAATTATATCGTTTATTTATGTTCGATTTATGTGTTCCTTAATATTTTTTTATCTTAAGAAAACACACATCTACTTTAGCCTCTTTAGGATATTCTTCAGTTTACTTTCTACATTTGAAAAACGTATTATCTTTTGGTTCTTTTTTGCTCTTCACATTGATAAT--ATCCAATCATTCTTAGTGCTCATTATTATTAGTATTAATTATACTATACAGTATTATCGAATACTGTTTAATTTAAACTGTTACAACCACTAACACTGTCAATTCTAGTGTGAAGCTTTAACTAACTTTTCTTACGGTTAAATAAATCTTCAAAAATTAAGTTTCAGGTGCCTTACATTTTAATTATTTTATGATTGAAACATTCTTTAAGTTTTCTTCCTATTCTATGTCTTCTTGTTTTCTTCAATTTTTTTTCTCAACAATTATGGA] [+] EMBL CD095056 [GCGGTAATCTGAAGAAGGCATTAGTTTGTCGCCATACGGAAATGAAGAAAGCTGTTCAACAGAGTCGTTTCACCAGATTTAAGAGAACTCTCTATAATCCAGAAAAACATGAAATTTTGGGAAGGACTTGCAGAGACTGGGTTTTGATTTTCATATTTTACGTCGTGGCATATACGTTCTTGGCTTTATTCTTCATCGGAACGCTATCAGTTTTTCTGTATGGCTACGTCAGTAAAACAGTTCCAACACTGACTGGGGAACAAAGCATCTTAAGGTTTCAGCCAGGAATAGAACTTGCTGCGAGACCAAACTCTCTTAATACGTTTATCCATGTTGCAACTTTCCAATCCACGATCAACCAACCGTATATTAATAAAGTGGATGAACTGTTTAGTAAATATGGCTCGAAAGGTGTAAATGAAGAGTGCAGTGGACCAGGTTTACATCCACAGAATCCAGATGTCCCCTGTAGCTTCGATCTCAGTGTTTTGGGTGAATGTCAATCAACTGAGAAAACCATATTGGAGGGAAAACTATG ] [+] EMBL CD117945 [ CGTTTCACCAGATGTAAGAGAACTCTCTATAATCCAAAAAAACATGAAATTTTGGGAAGGACTTGCAGAGACTGGGTTTTGATTTTCATATTTTACGTCGTGGCATATACGTTCTTGGCTTTATTCTTCATCGGAATGCTATCAGTTTTTCTGTATGGCTACGTCAGTAAAACAGTTCCAACACTGACTGGGGAACAAAGCATCTTAAGGTTTCAGCCAGGAATAGAACTTGCTGCGAGACCAAACTCTTTTAATACGTTTAT ] [-] EMBL CD158504 [ AAGAGAACTCTCTATAATCCAGAGAAACATGAAATTTTGGGAAGGACTTGCAGAGACTGGGTTTTGATTTTCATATTTTACGTCGTGGCATATACGTTCTTGGCTTTATTCTTCATCGGAATGCTATCAGTTTTTCTGTATGGCTACGTCAGTAAAACAGTTCCAACACTGACTGGGGAACAAAGCATCTTAAGGTTTCAGCCAGGAATAGAACTTGCTGCGAGACCAAACTCTTTTAATACGTTTATCCATGTTGCAACTTTCCAATCCA ] [-] EMBL CD095375 [ GGGTTTTGATTTTCATATTTTACGTCGTGGCATATACGTTCTTGGCTTTATTCTTCATCGGAATGCTATCAGTTTTTCTGTATGGCTACGTCAGTAAAACAGTTCCAACACTGACTGGGGAACAAAGCATCTTAAGGTTTCAGCCAGGAATAGAACTTGCTGCGAGACCAAACTCTTTTAATACGTTTATCCATGTTGCAACTTTCCAATCCACGATCAACCAACCGTATATTAATAAAGTGGATGAACTGTTTAGTAAATATGGCTCGAAAGGTGTAAATGAAGAGTGCAGTGGACCAGGTTTACATCCACAGAATCCAGATGTCCCCTGTAGCTTCGATCTCAGTGTTTTGGGTGAATGTCAATCAACTGAGAAAACCATATTGGAGGGAAAACTATGTCTTTATTTGAAAATAAATAGAGTCTACGGTTGGTTACCTGATTTGG AAGATCCTAAATCAATTCCATCACCTGCTATCGAATG TGGAGGTACAAATGAATTCGATAAAGAGTCCCTTGGTATTGTAA ] [+] EMBL AA629505 [ GTTTTGATTTTCATATTTTACGTCGTGGCATATACGTTCTTGGCTTTATTCTTCATCGGAATGCTATCAATTTTTCTGTATGGCTACGTCAGTAAAACAGTTCCAACACTGACTGGGGAACAAAGCATCTTAAGGTTTCAGCCAGGAATAGAACTTGCTNCGAGACCAAACTCTTTTAATACGTTTATCCATGTTGCAACTTTCCAATCCACGATCAACCAACCGTATATTAATAAAGTNGATGAACTGTTTAGTAAATATGGCTCGAAAGGTGTAAATGAGGANTGCAGTGGACCAGGTTTACATCCACAGAANCCAGATGTCCCCTGTANCTTCGATCTCANTGTTTTGGGTGAATGTCNATCAACTGAGAAAACCNTATTGGANGGAAAACTATGTCTTTATTTGAAAATAAATANAGTCTACGGTTGGTTACCTGATTTGGAAANATCCT ] [-] EMBL CD095320 [ GCATCTTAAGGTTTCAGCCAGGAATAGAACTTGCTGCGAGGCCAAACTCTTTTAATACGTTTATCCATGTTGCAACTTTCCAATCCACGATCAACCAACCGTATATTAATAAAGTGGATGAACTGTTTAGTAAATATGGCTCGAAAGGTGTAAATGGAGAGTGCAGTGGACCAGGTTTACATCCACAGAATCCAGATGTCCCCTGTAGCTTCGATCTCAGTGTTTTGGGTGAATGTCAATCAACTGAGAAAACCATATTGGAGGGAAAACTATGTCTTTATTTGAAAATAAATAGAGTCTACGGTTGGTTACCTGATTTGG AAGATCCTAAATCAATTCCATCACCTGC ] [+] EMBL CD111602 [ ATCTTAAGGTTTCAGCCAGGAATAGAACTTGCTGCGAGACCAAACTCTTTTAATACGTTTATCCATGTTGCAACTTTCCAATCCACGATCAACCAACCGTATATTAATAAAGTGGATGAACTGTTTAGTAAATATGGCTCGAAAGGTGTAAATGAAGAGTGCAGTGGACCAGGTTTACATCCACAGAATCCAGATGTCCCCTTTAGCTTCGATCTCAGTGTTTTGGGTGAATGTCAATCAACTGAGAAAACCATATTGGAGGGAAAACTAT ] [-] EMBL CD196059 [ AAGAGTGCAGTGGACCAGGTTTACATCCACAGAATCCAGATGTCCCCTGTAGCTTCGATCTCAGTGTTTTGGGTGAATGTCAATCAACTGAGAAAACCATATTGGAGGGAAAACTATGTCTTTATTTGAAAATAAATAGAGTCTACGGTTGGTTACCTGATTTGG AAGATCCTAAATCAATTCCATCACCTGCTATCGAATG TGGAGGTACAAATGAATTCGATAAAGAATCCCTTGGTATTGTAAGATACTTTCCGGAACACATAGCACCCAATGGGAAGAAGTATGGTATCATATCAAACAATTATTTTCCCTATTTAAGAATGAATAATTATCAAGCACCATTAGTTG CTGTACAACTCTCCAATATAACAAGAAATACTGTTGTCCTA ] [+] EMBL AI110887 [ TATGTCTTTATTTGAAAATAAATANAGTCTACGGTTGGTTACCTGATTTGG AANATCCTAAATCAATTCCATCACCTGCTATCGAATG TGGAGGTACAAATGAATTCGATAAAGAGTCCCTTGGTATTGTAAGATACTTTCCGGAACACATAGCACCCAATGGGAANAAGTATGGTATCATATCAAACAATTATTTTCCCTATTTAAGAATGAATAATTATCAAGCACCATTAGTTG CTGTACAACTCTCCAATATAACAAGAAATACTGTTGTCCTAGTTGAATGTCGTTNGGTNGGGTTTAAAAAATTCCATCGGT GGACCAGGTTTTGAAANTTTGTGTTTGAATGACAAAGATCCNGGAAAAATAAATCNCACTTTAATCTATTGCAAAACATAACATC TTTTTTAAAAATCCTGTTTTTAC ] [+] EMBL AI110989 [ ATGTCTTTATTTGAAAATAAATAGAGTCTACGGTTGGTTACCTGATTTGG AAGATCCTAAATCAATTCCATCACCTGCTATCGAATG TGGAGGTACAAATGAATTCGATAAAGAGTCCCTTGGTATTGTAAGATACTTTCCGGAACACATAGCACCCAATGGGAANAANTATGGTATCATATCAAACAATTATTTTCCCTATTTAANAATGAATAATTATCAAGCACCATTAGTTG CTGTNCAACTCTCCAATATAACAANAAATACTGTTGTCCTAGTTNAATGTCGTTTGGT TGGTTTAAAAAATTCCNTCGGTGGGAACAGGTTT ] [+] EMBL AA791352 [ CTAAATCAATTCCATCACCTGCTATCGAATGCTGGAGGTACAAATGAATGCGATAAAGAATCCCTTGGTATTGTAAGATA TTTCCGGAACACATAGCACCCAAT GGAAGAAGTATGGTATCATATCAAACAATTATTTT CCTATTTAAGAATGAATAATTATCAAGCACCATTAGTTGACTGTACAACT T CAATAT ] [-] EMBL CD126213 [ GTATCATATCAAACAATTATTTTCCCTATTTAAGAATGAATAATTATCAAGCACCATTAGTTG CTGTACAACTCTCCAATATAACAAGAAATACTGTTGTCCTAGTTGAATGTCGTTTGGT TGGTTTAAAAAATTCCATCGGT GGAACAGGTTTTG AAGTTTGTG TTG ATGACAAAGATTCAGG AAAATAAATCACACTTTAATCTATTGCAAAACATAACATCTTTTTTTTAAAAAT CTGTTTTTACTATTAAAAAAAAGGAAATAATTATATCGTTTATTTATGTTCGATTTATGTGTTCCTTAATATTTTTTTATCTTAAGAAAACACACATCTACTTTAGCCTCTTTAGGATATTCTTCAGTTTACTTTCTACATTTGAAAAACGTATTATCTTTTGGTTCTTTTTTGCTCTTCACATTGATAAT ATCCAATCATTCT ] [+] EMBL CD185374 [ T CTGTTTTTACTATTAAAAAAAAGGAAATAATTATATCGTTTATTTATGTTCGATTTATGTGTTCCTTAATATTTTTTTATCTTAAGAAAACACACATCTACTTTAGCCTCTTTAGGATATTCTTCAGTTTACTTTCTACATTTGAAAAACGTATTATCTTTTGGTTCTTTTTTGCTCTTCACATTGATAATTAAACCAATCATTCATAGTGCTCATTATTATTAGTATTAATTATACTATACAGTATTATCGAATACTGTTTAATTTAAACTGTTACAACCACTAACACTGTCAATTCTAGTGTGAAGCTTTAACTAACTTTTCTTACGGTTAAATAAATCTTCAAAAATTAAGTTTCAGGTGCCTTACATTTTAATTATTTTATGATTGAAACATTCTTTAAGTTTTCTTCCTATTCTATGTCTTCTTGTTTTCTTCAATTTTTTTTCTCAACAATTATGGA] consensusID : consensus_10282#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence [TAGTAAATATGGCTCGAAAGGTGTAAATGAAGAGTGCAGTGGACCAGGTTTACATCCACAGAATCCAGATGTCCCCTGTAGCTTCGATCTCAGTGTTTTGGGTGAATGTCAATCAACTGAGAAAACCATATTTTACGTCGTGGCATATACGTTCTTGGCTTTATTCTTCATCGGAATGCTATCAGTTTTTCTGTATGGCTACGTCAGTAAAACAGTTCCAACACTGACTGGGGAACAAAGCATCTTAAGGTTTCAGCCAGGAATAGAACTTGCTGCGAGACCAAACTCTTTTAATACGTTTATCCATGTTGCAACTTTCCAATCCACGACCAACCAACCGTATATTAATAAAGTGGATGAACTGTTTAGTAAATATGGCTCGAAAGGTGTAAATGAAGAG] [-] EMBL CD183637 [TAGTAAATATGGCTCGAAAGGTGTAAATGAAGAGTGCAGTGGACCAGGTTTACATCCACAGAATCCAGATGTCCCCTGTAGCTTCGATCTCAGTGTTTTGGGTGAATGTCAATCAACTGAGAAAACCATATTTTACGTCGTGGCATATACGTTCTTGGCTTTATTCTTCATCGGAATGCTATCAGTTTTTCTGTATGGCTACGTCAGTAAAACAGTTCCAACACTGACTGGGGAACAAAGCATCTTAAGGTTTCAGCCAGGAATAGAACTTGCTGCGAGACCAAACTCTTTTAATACGTTTATCCATGTTGCAACTTTCCAATCCACGACCAACCAACCGTATATTAATAAAGTGGATGAACTGTTTAGTAAATATGGCTCGAAAGGTGTAAATGAAGAG] consensusID : consensus_10282#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 150 fasta sequence [TTTTTACTATTAAAAAAAAGGAAATAATTATATCGTTTATTTATGTTCGATTTATGTGTTCCTTAATATTTTTTTATCTTAAGAAAACACACATCTACTTTAGCCTCTTTAGGATATTCTTCAGTTCAGACCGCGGCCTGAACTGATCAA] [-] EMBL CD131670 [TTTTTACTATTAAAAAAAAGGAAATAATTATATCGTTTATTTATGTTCGATTTATGTGTTCCTTAATATTTTTTTATCTTAAGAAAACACACATCTACTTTAGCCTCTTTAGGATATTCTTCAGTTCAGACCGCGGCCTGAACTGATCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10282#0 GCGGTAATCTGAAGAAGGCATTAGTTTGTCGCCATACGGAAATGAAGAAAGCTGTTCAAC 60 consensus_10282#2 ------------------------------------------------------------ consensus_10282#1 ------------------------------------------------------------ consensus_10282#0 AGAGTCGTTTCACCAGATTTAAGAGAACTCTCTATAATCCAGAAAAACATGAAATTTTGG 120 consensus_10282#2 ------------------------------------------------------------ consensus_10282#1 ------------------------------------------------------------ consensus_10282#0 GAAGGACTTGCAGAGACTGGGTTTTGATTTTCATATTTTACGTCGTGGCATATACGTTCT 180 consensus_10282#2 ------------------------------------------------------------ consensus_10282#1 ------------------------------------------------------------ consensus_10282#0 TGGCTTTATTCTTCATCGGAATGCTATCAGTTTTTCTGTATGGCTACGTCAGTAAAACAG 240 consensus_10282#2 ------------------------------------------------------------ consensus_10282#1 ------------------------------------------------------------ consensus_10282#0 TTCCAACACTGACTGGGGAACAAAGCATCTTAAGGTTTCAGCCAGGAATAGAACTTGCTG 300 consensus_10282#2 ------------------------------------------------------------ consensus_10282#1 ------------------------------------------------------------ consensus_10282#0 CGAGACCAAACTCTTTTAATACGTTTATCCATGTTGCAACTTTCCAATCCACGATCAACC 360 consensus_10282#2 ------------------------------------------------------------ consensus_10282#1 ------------------------------------------------------------ consensus_10282#0 AACCGTATATTAATAAAGTGGATGAACTGTTTAGTAAATATGGCTCGAAAGGTGTAAATG 420 consensus_10282#2 ------------------------------------------------------------ consensus_10282#1 ------------------------------------------------------------ consensus_10282#0 AAGAGTGCAGTGGACCAGGTTTACATCCACAGAATCCAGATGTCCCCTGTAGCTTCGATC 480 consensus_10282#2 ------------------------------------------------------------ consensus_10282#1 ------------------------------------------------------------ consensus_10282#0 TCAGTGTTTTGGGTGAATGTCAATCAACTGAGAAAACCATATTGGAGGGAAAACTATGTC 540 consensus_10282#2 ------------------------------------------------------------ consensus_10282#1 ------------------------------------------------------------ consensus_10282#0 TTTATTTGAAAATAAATAGAGTCTACGGTTGGTTACCTGATTTGGAAGATCCTAAATCAA 600 consensus_10282#2 ------------------------------------------------------------ consensus_10282#1 ------------------------------------------------------------ consensus_10282#0 TTCCATCACCTGCTATCGAATGTGGAGGTACAAATGAATTCGATAAAGAGTCCCTTGGTA 660 consensus_10282#2 ------------------------------------------------------------ consensus_10282#1 ------------------------------------------------------------ consensus_10282#0 TTGTAAGATACTTTCCGGAACACATAGCACCCAATGGGAAGAAGTATGGTATCATATCAA 720 consensus_10282#2 ------------------------------------------------------------ consensus_10282#1 ------------------------------------------------------------ consensus_10282#0 ACAATTATTTTCCCTATTTAAGAATGAATAATTATCAAGCACCATTAGTTGCTGTACAAC 780 consensus_10282#2 ------------------------------------------------------------ consensus_10282#1 ------------------------------------------------------------ consensus_10282#0 TCTCCAATATAACAAGAAATACTGTTGTCCTAGTTGAATGTCGTTTGGTTGGTTTAAAAA 840 consensus_10282#2 ------------------------------------------------------------ consensus_10282#1 ------------------------------------------------------------ consensus_10282#0 ATTCCATCGGTGGAACAGGTTTTGAANTTTGTGTTGATGACAAAGATCCNGGAAAATAAA 900 consensus_10282#2 ------------------------------------------------------------ consensus_10282#1 --------------TAGTAAATATGGCTCGAAAGGTGTAAATGAAGAGTGCAGTGGACCA 46 consensus_10282#0 TCNCACTTTAATCTATTGCAAAACATAACATCTTTTTTAAAAATCTGTTTTTACTATTAA 960 consensus_10282#2 -----------------------------------------------TTTTTACTATTAA 13 consensus_10282#1 GGTTTACATCCACAGAATCCAGATGTCCCCTGTAGCTTCGATCTCAGTGTTTTGGGTGAA 106 * *** * ** consensus_10282#0 AAAAAAGGAAATAATTATATCGTTTATTTATGTT-CGATTTATGTGTTCCTTAATAT-TT 1018 consensus_10282#2 AAAAAAGGAAATAATTATATCGTTTATTTATGTT-CGATTTATGTGTTCCTTAATAT-TT 71 consensus_10282#1 TGTCAATCAACTGAGAAAACCATAT-TTTACGTCGTGGCATATACGTTCTTGGCTTTATT 165 ** ** * * * * * * * **** ** * *** **** * * * ** consensus_10282#0 TTTTATCTTAA-GAAAACACACATCTACTTTAGCCTCTTTAGGATATT--CTTCAGTTTA 1075 consensus_10282#2 TTTTATCTTAA-GAAAACACACATCTACTTTAGCCTCTTTAGGATATT--CTTCAGTTCA 128 consensus_10282#1 CTTCATCGGAATGCTATCAGTTTTTCTGTATGGCTACGTCAGTAAAACAGTTCCAACACT 225 ** *** ** * * ** * * * ** * * ** * * * ** consensus_10282#0 CTTTCTACATTTGAAAAACGTATTATCTTTTGGTTCTTTTTTGCTCTTCACATTGATAAT 1135 consensus_10282#2 GACCGCGGCCTGAACTGATCAA-------------------------------------- 150 consensus_10282#1 GACTGGGGAACAAAGCATCTTAAGGTTTCAGCCAGGAATAGAACTTGCTGCGAGACCAAA 285 * * consensus_10282#0 ATCCAATCATTCTTAGTGCTCATTATTATTAGTATTAATTATACTATACAGTATTATCGA 1195 consensus_10282#2 ------------------------------------------------------------ consensus_10282#1 CTCTTTTAATACGTTTATCCATGTTGCAACTTTCCAATCCACGACCAACCAACCGTATAT 345 consensus_10282#0 ATACTGTTTAATTTAAACTGTTACAACCACTAACACTGTCAATTCTAGTGTGAAGCTTTA 1255 consensus_10282#2 ------------------------------------------------------------ consensus_10282#1 TAATAAAGTGGATGAACTGTTTAGTAAATATGGCTCGAAAGGTGTAAATGAAGAG----- 400 consensus_10282#0 ACTAACTTTTCTTACGGTTAAATAAATCTTCAAAAATTAAGTTTCAGGTGCCTTACATTT 1315 consensus_10282#2 ------------------------------------------------------------ consensus_10282#1 ------------------------------------------------------------ consensus_10282#0 TAATTATTTTATGATTGAAACATTCTTTAAGTTTTCTTCCTATTCTATGTCTTCTTGTTT 1375 consensus_10282#2 ------------------------------------------------------------ consensus_10282#1 ------------------------------------------------------------ consensus_10282#0 TCTTCAATTTTTTTTCTCAACAATTATGGA 1405 consensus_10282#2 ------------------------------ consensus_10282#1 ------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||