These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10283#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1141 fasta sequence [TGTAACGTTACATCCCGTGTCATTCTGGTTGACTT--AATGACACGGTTATCAGTGTATCGAACTATAAAGCACTAAATATTCAAAGTTTTAGCAGAGATCTTTGTGCATGACGCAATGCTATACTTAGTAGGCCTGGGTTTAGGTTCCTTCTCGGATTTGACAATGAAGGGTTAT-GATGTACTCAAAAAGTGTGATTATGTGTACCTTGATAGTTATACTTCCATATTCTCTGAGGAAGGGTTCAAAACATTGGATATCGATGGGAAATGCATAC---TTCCAGCCGATCGAGAATTCGTGGAGCAAAGCAGTGAAATTATAGATCGAGCGAAAAACCATGACGTCGCGTTTCTG-GTCGTGGGTGATCCTTTGGGAGCAACTACACACAGTGATATTATATTGAGAGCTGTAGAAAAAAATATATCTTATCAAATTATTCACAATGCGTCAGTTATAACTGCAGTCGGTTGTTGTGGCTTGCAGCTTTATAACTTTGGTGCGACTGTATCAATTCCTTTGTGGGATGAATTCGGTCATCCGGAAAGCTTCTATGACAAAATAATAATGAATATGAAAAGCGGATTTCACACTCTATGTTTGCTGGATATCAAGGTAAAAGAGCGTTCTTTGGAAAACATCCTACGTGACCGCAAAGTCTACGAACCATCTCGCTTTATGTCTTGTTGTGAAGCTGTACACCAAATAGTGGACGTCAGTAATAGGAAAGCAGAGGATCAGCAGAGCAGAGAAAATGCAGTTATTACGAAGTCCTGT-ATTGTAATTTGCTTATCCCGATTAGGATGTGATAACCAGAAAATCGTTGTCTCAACAATAAGTGATA-TCAATGAAGCCTAC-TTAAACCCAGAAAAAAATGGTCTCAACTTTGGAGACCCACCGCATTGTATGATCATACCTGGGATAATCCACGAGCTGGAGTCAATATTTCTGGTTGCTCGATACCGAAACGATGTCGACAGTCAAATATTTCTGCCCATATTTTACACTACA-CAA-GGAAATTCGGAAAACGTCCTCCAAATTTGTCAGGACACCATACACCTACACAACGAAACAGTCCGCATCATGCAACCTACGCTTGACCACACTTAGTATTATATACACCACTTCTTTGATAAAATAAAAATAT] [+] EMBL CD079836 [TGTAACGTTACATCCCGTGTCATTCTGGTTGACTT AATGACACGGTTATCAGTGTATCGAACTATAAAGCACTAAATATTCAAAGTTTTAGCAGAGATCTTTGTGCATGACGCAATGCTATACTTAGTAGGCCTGGGTTTAGGTTCCTTCTCGGATTTGACAATGAAGGGTTAT GATGTACTCAAAAAGTGTGATTATGTGTACCTTGATAGTTATACTTCCATATTCTCTGAGGAAGGGTTCAAAACATTGGATATCGATGGGAAATGCATAC TTCCAGCCGATCGAGAATTCGTGGAGCAAAGCAGTGAAATTATAGATCGAGCGAAAAACCATGACGTCGCGTTTCTG GTCGTGGGTGATCCTTTGGGAGCAACTACACACAGTGATATTATATTGAGAGCTGTAGAAAAAAATATATCTTATCAAATTATTCACAATGCGTCAGTTATAACTGCAGTCGGTTGTTGTGGCTTGCAGCTTTATAACTTTGGTGCGACTGTATCAATTCCTTTGTGGGATGAATTCGGTCATCCGGAAAGCTTCTATGACAAAATAATAATGAATATGAAAAGCGGATTTCACACTCTATGTTTGCTGGATATCAAGGTAAAAGAGCGTTCTTTGG AAACATCCTACGTGACCGCANAGTCTACGAACCATCTCGCTTTATGTCTTGTTGTG ] [+] EMBL CD079281 [ CCCGTGTCATTCTGGTTGACTTAGAATGACACGGTTATCAGTGTATCGAACTATAAAGCACTAAATATTCAAGGTTTAAACAGAGATCTTTGTGCATGACGCAATGCTATACTTAGTAGGCCTGGGTTTAGGTTCCTTCTCGGATTTGACAATGAGGGGTTATGGAT CACACAAAAAGGGTGATTATGCGCACCTTGATAGTTATACTTCCATATTCTCTGAGGAAGGGTTCAAAACATTGGATATCGAT GGAAATG ATACTCNTTCCAGCCGATCGAGAATTCGTGGAGCAAAGCAGTGAAATTATAGATCGAGCGAAAAACCATGACGTCGCGTTTCTG GTCGTGGGTGATCCTTTGGGAGCAACTACACACAGTGATATTATATTGAGAGCTGTAGAAAAAAATATATCTTATCANATTATTCACAATGCGTCAGTTATAACTGCAGTCGGTTGGTGTGGCTTGCAGCTTTATAACTTTGGTGCG ] [+] EMBL CD131906 [ aattacagGATTT TATGA A TGTTATCAGTGTATCGAACTATAAAGCACTAAATATTCAAAGTTTTAGCAGAGATCTTTGTGCATGACGCAATGCTATACTTAGTACGCCTGGGTTTAGGTTCCTTCTCGGATTTGACAATGAAGGGTTAT GATGTACTCAAAAAGTGTGATTATGTGTACCTTGATAGTTATACTTCCATATTCTCTGAGGAAGGG ] [+] EMBL BF936210 [ ACGGTTATCAGTGTATCGAACTATAAAGCACTAAATATTCAAAGTTTTAGCAGAGATCTTTGTGCATGACGCAATGCTATACTTAGTAGGCCTGGGTTTAGGTTCCTTCTCGGATTTGACAATGAAGGGTTAT GATGTACTCAAAAAGTGTGATTATGTGTACCTTGATAGTTATACTTCCATATTCTCTGAGGAAGGGTTCAAAACATTGGATATCGATGGGAAATGCATAC TTCCAGCCGATCGAGAATTCGTGGAGCAAAGCAGTGAAATTATAGATCGAGCGAAAAACCATGACGTCGCGTTTCTG GTCGTGGGTGATCCTTTGGGAGCAACTACACACAGTGATATTATATTGAGAGCTGTAGAAAAAAATATATCTTATCAAATTATTCACAATGCGTCAGTTATAACTGCAGTCGGTTGTTGTGGCTTGCAGCTTTATAACTTTGGTGCGACTGTATCAATTCCTTT ] [+] EMBL AI975807 [ ACGGTTATCAGTGTATCGAACTATAAAGCACTAAATATTCAAAGTTTTAGCAGAGATCTTTGTGCATGACGCAATGCTATACTTAGTAGGCCTGGGTTTAGGTTCCTTCTCGGATTTGACAATGAAGGGTTAT GATGTACTCAAAAAGTGTGATTATGTGTACCTTGATAGTTATACTTCCATATTCTCTGAGGAAGGGTTCAAAACATTGGATATCGATGGGAAATGCATAC TTCCAGCCGATCGAGAATTCGTGGAGCAAAGCAGTGAAATTATAGATCGAGCGAAAAACCATGACGTCGCGTTTCTG GTCGTGGGTGATCCTTTGGGAGCAACTACACACAGTGATATTA ] [+] EMBL BF936335 [ ACGGTTATCAGTGTATCGAACTATAAAGCACTAAATATTCAAAGTTGTAGCAGAGATCTTTGTGCATGACGCAATGCTATACTTAGTAGGCCTGGGTTTAGGTTCCTTCTCGGATTTGACAATGAAAGGTTAT GATGTACTCAAAAAGTGTGATTATGTGTACCTTGATAGTTATACTTCCATATTCTCTGAGGAAGGGTTCAAAACATTGGATATCGATGGGAAATGCATAC TTCCAGCCGATCGAGAATTCGTGGAGCAAAGCAGCGAAATTATAGATCGAGCGAAAAACCATGACGTCGCGTATCTGAGTCG GGGTGATCCTTTGGGAGC ] [-] EMBL CD096822 [ CTACACACAGTGATATTATATTGAGAGCTGTAGAAAAGAATATATCTTATCAAATTATTCACAATGCGTCAGTTATAACTGCAGTCGGTTGTTGTGGCTTGCAGCTTTATAACTTTGGTGCGACTGTATCAATTCCTTTGTGGGATGAATTCGGTCATCCGGAAAGCTTCTACGACAAAATAATAATGAATATGAAAAGCGGATTTCACACTCTATGTTTGCTGGATATCAAGGTAAAAGAGCGTTCTTTGGAAAACATCCTACGTGACCGCAAAGTCTACGAACCATCTCGCTTTATGTCTTGTTGTGAAGCTGTACACCAAATAGTGGACGTCAGTAATA ] [+] EMBL CD117890 [ TTATTCACAATGCGTCAGTTATAACTGCAGTCGGTTGTTGTGGCTTGCAGCTTTATAACTTTGGTGCGACTGTATCAATTCCTTTGTGGGATGAATTCGGTCATCCGGAAAGCTTCTATGACAAAATAATAATGAATATGAAAAGCGGATTTCACACTCTATGTTTGCTGGATATCAAGGTAAAAGAGCGTTCTTTGGAAAACATCCTACGTGACCGCAAAGTCTACGAACCATCTCGCTTTATGTCTTGTTGTGAAGCTG ] [-] EMBL CD076994 [ GTCATCCGGAAAGCTTCTATGACAAAATAATAATGAATATGAAAAGCGGATTTCACACTCTATGTTTGCTGGATATCAAGGTAAAAGAGCGTTCTTTGGAAAACATCCTACGTGACCGCAAAGTCTACGAACCATCTCGCTTTATGTCTTGTTGTGAAGCTGTACACCAAATAGTGGACGTCAGTAATAGGAAAGCAGAGGATCAGCAGAGCAGAGAAAATGCAGTTATTACGAAGTCCTGT ATTGTAATTTGCTTATCCCGATTAGGATGTGATAACCAGAAAATCGTTGTCTCAACAATAAGTGATA TCAATGAAGCCTAC TTAAACCCAGAAAAAAATGGTCTCAACTTTGGAGACCCACCGCATTGTATGATCATACCTGGGATAATCCACGAGCTGGAGTCAATATTTCTGGTTGCTCGATACCGAAACGATGTCGACAGTCAAATATTTCTGCCCATATTTTACACTACA CAA GGAAATTCGGAAAACGTCCTCCAAATTTGTCAGGACACCATACACCTACACAACGAAACAGTCCGCATCATGCAACCTACGCTTGACCACACTTAGTATTATATACACCACTTCTTTGATAAAATAAAAATAT] [+] EMBL CD115120 [ CCTACGTGACCGCAAAGTCTACGAACCATCTCGCTTTATGTCTTGTTGTGAAGCTGTACACCAAATAGTGGACGTCAGTAATAGGAAAGCAGAGGATCAGCAGAGCAGAGAAAATGCAGTTATTACGAAGTCCTGT ATTGTAATTTGCTTATCCCGATTAGGATGTGATAACCAGAAAATCGTTGTCTCAACAATAAGTGATA TCAATGAAGCCTAC TTAAACCCAGAAAAATATGGTCTCAACTTTGGAGACCCACCGCATTGTATGATCATACCTGGGATAATCCACGAGCTGGAGTCAATATTTCTGGTTGCTCGATACCGAAACGATGTCGACAGTCAAATATTTCTGCCCATATTTCACACTACACCAA GGAAATTCNGAAAACGTCCTNCAAATTTGTCAGGACACCATACACCTACACAACGAAACAGTCCGCATCAT ] [+] EMBL CD115117 [ CCTACGTGACCGCGAAGTCTACGAACCATCTCGCTTTATGTCTTGTTGTGAAGCTGTACACCAAATAGTGGACGTCAGTAATAGGAAAGCAGAGGATCAGCAGAGCAGAGAAAATGCAGTTATTACGAAGTCCTGT ATTGTAATTTGCTTATCCCGATTAGGATGTGATAACCAGAAAATCGTTGTCTCAACAATAAGTGATA TCAATGAAGCCTAC TTAAACCCAGAAAAAAATGGTCTCAACTTTGGAGACCCACCGCATTGTATGATCATACCTGGGATAATCCACGAGCTGGAGTCAATATTTCTGGTTGCTCGATACCGAAACGATGTCGACAGTCAAATATTTCTGCCCATATTTTACACTACA CAANGGAAATCCGG AAACGTCCTTNCAATTTGTCAGGACACCATACACCTACACAACGAAACAGTCCGCATCAT ] [-] EMBL CD140184 [ AAGTCTACGAACCATCTCGCTTTATGTCTTGTCGTGAAGCTGTACACCAAATAGTGGACGTCAGTAATAGGAAAGCAGAGGATCAGCAGAGCAGAGCAAATGCAGTTATTACGAAGTCCTTTAATTGTAATTTGCTTATCTCGATTAGGATGTGATAACCAGAAAATCGTTGTCTCAACAATAAGTGATACTCAATGAAGCCTACATTAAACCCAGAAAAAAATGGTCTCAACTTTGGAGACCCACCGCATTGTATGATCATACCTGGGATAATCAACGAGCTGGAGTCAATATTTCTGGTTGCTCGATACCGAAACGATGTCGACAGTCAAATATTTCTGCCCATAT ] [-] EMBL CD140115 [ CTACGAACCATCTCGCTTAATGTCTTGTTGTGAAGCTGTACACCAAATAGTGGACGTCAGTAATAGGAAAGCAGAGGATCAGCAGAGCAGAGAAAATGCAGTTATTACGAAGTCCTGT ATTGTAATTTGCTTATCCCGATTAGGATGTGATAACCAGAAAATCGTTGTCTCAACAATAAGTGATA TCAATGAAGCCTAC TTAAACCCAGAAAAAAATGGTCTCAACTTTGGAGACCCACCGCATTGTATGATCATACCTGGGATAATCCACGAGCTGGAGTCAATATTTCTGGTTGCTCGATACCGAAACGATGTCGACAGTCAAATATTTCTGCCCATAT ] [+] EMBL CD195065 [ GCAGAGAAAATGCAGTTATTACGAAGTCCTGT ATTGTAATTTGCTTATCCCGATTAGGATGTGATAACCAGAAAATCGTTGTCTCAACAATAAGTGATA TCAATGAAGCCTAC TTAAACCCAGAAAAAAATGGTCTCAACTTTGGAGACCCACCGCATTGTATGATCATACCTGGGATAATCCACGAGCTGGAGTCAATATTTCTGGTTGCTCGATACCGAAACGATGTCGACAGTCAAATATTTCTGCCCATATTTTACACTACA CAA GGAAATTCGGAAAACGTCCTCCAAATTTGTCAGGACACCATACACCTAC ] consensusID : consensus_10283#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 334 fasta sequence [AAAAGGTCAAGGGAAAACATCCTACGTGACCGCAAAGTCTACGAACCATCTCGCTTTATGTCTTGTTGTGAAGCTGTACACCAAATAGTGGACGTCAGTAATAGGAAAGCAGAGGATCAGCAGAGCAGAGAAAATGCAGTTATTACGAAGTCCTGTATTGTAATTTGCTTATCCCGATTAGGATGTGATAACCAGAAAATCGTTGTCTCAACAATAAGTGATATCAATGAAGCCTACTTAAACCCAGAAAAAAATGGTCTCAACTTTGGAGACCCACCGCATTGTATGATCATACCTGGGATAATCCACGAGCTGGAGTCAATATTTCTGGTTG] [+] EMBL CD087363 [AAAAGGTCAAGGGAAAACATCCTACGTGACCGCAAAGTCTACGAACCATCTCGCTTTATGTCTTGTTGTGAAGCTGTACACCAAATAGTGGACGTCAGTAATAGGAAAGCAGAGGATCAGCAGAGCAGAGAAAATGCAGTTATTACGAAGTCCTGTATTGTAATTTGCTTATCCCGATTAGGATGTGATAACCAGAAAATCGTTGTCTCAACAATAAGTGATATCAATGAAGCCTACTTAAACCCAGAAAAAAATGGTCTCAACTTTGGAGACCCACCGCATTGTATGATCATACCTGGGATAATCCACGAGCTGGAGTCAATATTTCTGGTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10283#0 TGTAACGTTACATCCCGTGTCATTCTGGTTGACTTAATGACACGGTTATCAGTGTATCGA 60 consensus_10283#1 ------------------------------------------------------------ consensus_10283#0 ACTATAAAGCACTAAATATTCAAAGTTTTAGCAGAGATCTTTGTGCATGACGCAATGCTA 120 consensus_10283#1 ------------------------------------------------------------ consensus_10283#0 TACTTAGTAGGCCTGGGTTTAGGTTCCTTCTCGGATTTGACAATGAAGGGTTATGATGTA 180 consensus_10283#1 ------------------------------------------------------------ consensus_10283#0 CTCAAAAAGTGTGATTATGTGTACCTTGATAGTTATACTTCCATATTCTCTGAGGAAGGG 240 consensus_10283#1 ------------------------------------------------------------ consensus_10283#0 TTCAAAACATTGGATATCGATGGGAAATGCATACTTCCAGCCGATCGAGAATTCGTGGAG 300 consensus_10283#1 ------------------------------------------------------------ consensus_10283#0 CAAAGCAGTGAAATTATAGATCGAGCGAAAAACCATGACGTCGCGTTTCTGGTCGTGGGT 360 consensus_10283#1 ------------------------------------------------------------ consensus_10283#0 GATCCTTTGGGAGCAACTACACACAGTGATATTATATTGAGAGCTGTAGAAAAAAATATA 420 consensus_10283#1 ------------------------------------------------------------ consensus_10283#0 TCTTATCAAATTATTCACAATGCGTCAGTTATAACTGCAGTCGGTTGTTGTGGCTTGCAG 480 consensus_10283#1 ------------------------------------------------------------ consensus_10283#0 CTTTATAACTTTGGTGCGACTGTATCAATTCCTTTGTGGGATGAATTCGGTCATCCGGAA 540 consensus_10283#1 ------------------------------------------------------------ consensus_10283#0 AGCTTCTATGACAAAATAATAATGAATATGAAAAGCGGATTTCACACTCTATGTTTGCTG 600 consensus_10283#1 ------------------------------------------------------------ consensus_10283#0 GATATCAAGGTAAAAGAGCGTTCTTTGGAAAACATCCTACGTGACCGCAAAGTCTACGAA 660 consensus_10283#1 ---------------AAAAGGTCAAGGGAAAACATCCTACGTGACCGCAAAGTCTACGAA 45 * * ** ********************************** consensus_10283#0 CCATCTCGCTTTATGTCTTGTTGTGAAGCTGTACACCAAATAGTGGACGTCAGTAATAGG 720 consensus_10283#1 CCATCTCGCTTTATGTCTTGTTGTGAAGCTGTACACCAAATAGTGGACGTCAGTAATAGG 105 ************************************************************ consensus_10283#0 AAAGCAGAGGATCAGCAGAGCAGAGAAAATGCAGTTATTACGAAGTCCTGTATTGTAATT 780 consensus_10283#1 AAAGCAGAGGATCAGCAGAGCAGAGAAAATGCAGTTATTACGAAGTCCTGTATTGTAATT 165 ************************************************************ consensus_10283#0 TGCTTATCCCGATTAGGATGTGATAACCAGAAAATCGTTGTCTCAACAATAAGTGATATC 840 consensus_10283#1 TGCTTATCCCGATTAGGATGTGATAACCAGAAAATCGTTGTCTCAACAATAAGTGATATC 225 ************************************************************ consensus_10283#0 AATGAAGCCTACTTAAACCCAGAAAAAAATGGTCTCAACTTTGGAGACCCACCGCATTGT 900 consensus_10283#1 AATGAAGCCTACTTAAACCCAGAAAAAAATGGTCTCAACTTTGGAGACCCACCGCATTGT 285 ************************************************************ consensus_10283#0 ATGATCATACCTGGGATAATCCACGAGCTGGAGTCAATATTTCTGGTTGCTCGATACCGA 960 consensus_10283#1 ATGATCATACCTGGGATAATCCACGAGCTGGAGTCAATATTTCTGGTTG----------- 334 ************************************************* consensus_10283#0 AACGATGTCGACAGTCAAATATTTCTGCCCATATTTTACACTACACAAGGAAATTCGGAA 1020 consensus_10283#1 ------------------------------------------------------------ consensus_10283#0 AACGTCCTCCAAATTTGTCAGGACACCATACACCTACACAACGAAACAGTCCGCATCATG 1080 consensus_10283#1 ------------------------------------------------------------ consensus_10283#0 CAACCTACGCTTGACCACACTTAGTATTATATACACCACTTCTTTGATAAAATAAAAATA 1140 consensus_10283#1 ------------------------------------------------------------ consensus_10283#0 T 1141 consensus_10283#1 - |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||