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Schistosoma mansoni
cluster # 10307 cluster # 10307       Sequences # 15       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10307#0 length = 424 sequences # 14  
consensus_10307#1 length = 269 sequences # 1  

consensusID : consensus_10307#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 424
fasta sequence
                              [CTGAACTGCATCATGCCGAAGCGTGGAAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT-AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTG-ATTGTCAACAACAAGGGAGAACTTAAAGGCTCGGCAATTACCGGTCCTGTGGCTAAAGAATGCGCTGATATGTGGCCAAAGATTGCATCAACCGCCAGTT]

[+] EMBL CD132557             [CTGAACTGCATCATGCCGAAGCGTGGAAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTC                                                                                                                                                                                                                                          ]
[+] EMBL AI976828             [  GACCTGCATCATGCCGAAGCGTGGAAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTG ATTGTCAACAACAg                                                                                      ]
[+] EMBL CD124003             [             TGCCGAAGCGTGGAAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTA                                                                                                                               ]
[+] EMBL CD188170             [                 GAAGCGTGGAAGGGGTGGTTCATCTGGCGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCGACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTG ATTGTCAACAACAAGGGAGAACTTAAAGGCTCGGCAATTACCGGTCCTGTGGCTAAAGAATGCGCTGATATGTGGCCAAAGATTG               ]
[+] EMBL CD132601             [                 GAAGCGTGGAAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAAC                                                                                                                                                                ]
[+] EMBL CD132586             [                 GAAGCGTGGAAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTC                                                                                                                                                                                                                                          ]
[-] EMBL CD180560             [                          AAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTG ATTGTCAACAACAAGGGAGAACTT AAGGCTCGGCAATTACCGGTC                                                      ]
[+] EMBL CD135706             [                                 GGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTG ATTGTCAACAACAAGGGAGAACTTAAAGGCTCGGCA                                                                ]
[+] EMBL CD113619             [                                            TGGAAAGTTCCGAATTTCATTGGCTCTTCCCGTTGGAGCTATAATGAACTGTGCTGACAATAGAGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCCTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGCTTGCTCAGTT AAAAAAGGGAAACCAAAACTAAGGACAAAAGTGTTGTATGCTGTACTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCAAGGATAACGCTGGTGTG ATTGTCAACAACTAGGGAGAACTTAAAGGCTCGGCA                                                                ]
[-] EMBL CD113582             [                                             GGAAAGTTCTGAATTTCACTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGGCAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTGCATTGTCAACAGCAAGGGAGAACTTAAAGGCTCGGCAA                                                               ]
[-] EMBL CD113616             [                                             GGAAAGTTCTGAATTTCACTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTGCATTGTCAACAACAAGGGAGAACTTAAAGGCTTGGCAA                                                               ]
[-] EMBL CD141139             [                                                                                    ATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTCGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGG                                                                                                                                                          ]
[-] EMBL CD202485             [                                                                                         GAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTTAAAAAAAAGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTG ATTGTCAACAACCAGGGAGAACTCAAAGGCTCGGCAATTACCGGTCCTGTGGCTAAAGAATGCGCTGATATGTGGCCAA                     ]
[+] EMBL CD148684             [                                                                                                                                                                                                                                                GTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTG ATTGTCAACAACAAGGGAGAACTTAAAGGCTCGGCAATTACCGGTCCTGTGGCTAAAGAATGCGCTGATATGTGGCCAAAGATTGCATCAACCGCCAGTT]


>consensus_10307#0 CTGAACTGCATCATGCCGAAGCGTGGAAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATT TCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAAT TTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCA ACTGGTGACCTCATTGTTTGCTCAGTTAAAAAAGGGAAACCAGAACTAAGGAAAAAAGTG TTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATT TATTTCGAGGATAACGCTGGTGTGATTGTCAACAACAAGGGAGAACTTAAAGGCTCGGCA ATTACCGGTCCTGTGGCTAAAGAATGCGCTGATATGTGGCCAAAGATTGCATCAACCGCC AGTT



consensusID : consensus_10307#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 269
fasta sequence
                              [CATGATGCATGCCCACCGCGGTTAAAAAGTACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTTAAAAAAAGGGAAACCAGAACTAAGGAAAAAAAGTGTTGTATGCTGTGGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTGATTG]

[+] EMBL CD197884             [CATGATGCATGCCCACCGCGGTTAAAAAGTACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTTAAAAAAAGGGAAACCAGAACTAAGGAAAAAAAGTGTTGTATGCTGTGGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTGATTG]


>consensus_10307#1 CATGATGCATGCCCACCGCGGTTAAAAAGTACTGTGCTGACAATAGTGGTGCCAAAAATT TGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAA CTGGTGACCTCATTGTTTGCTCAGTTAAAAAAAGGGAAACCAGAACTAAGGAAAAAAAGT GTTGTATGCTGTGGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTAT TTATTTCGAGGATAACGCTGGTGTGATTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10307#0      CTGAACTGCATCATGCCGAAGCGTGGAAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATT 60
consensus_10307#1      ------------------------------------------------------------
                                                                                   

consensus_10307#0      TCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAAT 120
consensus_10307#1      -CATGATGCATGCCCACCGCGGTTAAAAAGTACTGTGCTGACAATAGTGGTGCCAAAAAT 59
                        ***      * **    *  * ** ** * *****************************

consensus_10307#0      TTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCA 180
consensus_10307#1      TTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCA 119
                       ************************************************************

consensus_10307#0      ACTGGTGACCTCATTGTTTGCTCAGTTAAAAAA-GGGAAACCAGAACTAAGGAAAAAA-G 238
consensus_10307#1      ACTGGTGACCTCATTGTTTGCTCAGTTAAAAAAAGGGAAACCAGAACTAAGGAAAAAAAG 179
                       ********************************* ************************ *

consensus_10307#0      TGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTA 298
consensus_10307#1      TGTTGTATGCTGTGGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTA 239
                       ************* **********************************************

consensus_10307#0      TTTATTTCGAGGATAACGCTGGTGTGATTGTCAACAACAAGGGAGAACTTAAAGGCTCGG 358
consensus_10307#1      TTTATTTCGAGGATAACGCTGGTGTGATTG------------------------------ 269
                       ******************************                              

consensus_10307#0      CAATTACCGGTCCTGTGGCTAAAGAATGCGCTGATATGTGGCCAAAGATTGCATCAACCG 418
consensus_10307#1      ------------------------------------------------------------
                                                                                   

consensus_10307#0      CCAGTT 424
consensus_10307#1      ------
                             




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)