These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10307#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 424 fasta sequence [CTGAACTGCATCATGCCGAAGCGTGGAAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT-AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTG-ATTGTCAACAACAAGGGAGAACTTAAAGGCTCGGCAATTACCGGTCCTGTGGCTAAAGAATGCGCTGATATGTGGCCAAAGATTGCATCAACCGCCAGTT] [+] EMBL CD132557 [CTGAACTGCATCATGCCGAAGCGTGGAAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTC ] [+] EMBL AI976828 [ GACCTGCATCATGCCGAAGCGTGGAAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTG ATTGTCAACAACAg ] [+] EMBL CD124003 [ TGCCGAAGCGTGGAAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTA ] [+] EMBL CD188170 [ GAAGCGTGGAAGGGGTGGTTCATCTGGCGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCGACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTG ATTGTCAACAACAAGGGAGAACTTAAAGGCTCGGCAATTACCGGTCCTGTGGCTAAAGAATGCGCTGATATGTGGCCAAAGATTG ] [+] EMBL CD132601 [ GAAGCGTGGAAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAAC ] [+] EMBL CD132586 [ GAAGCGTGGAAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTC ] [-] EMBL CD180560 [ AAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTG ATTGTCAACAACAAGGGAGAACTT AAGGCTCGGCAATTACCGGTC ] [+] EMBL CD135706 [ GGTTCATCTGGTGGAAAGTTCCGAATTTCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTG ATTGTCAACAACAAGGGAGAACTTAAAGGCTCGGCA ] [+] EMBL CD113619 [ TGGAAAGTTCCGAATTTCATTGGCTCTTCCCGTTGGAGCTATAATGAACTGTGCTGACAATAGAGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCCTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGCTTGCTCAGTT AAAAAAGGGAAACCAAAACTAAGGACAAAAGTGTTGTATGCTGTACTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCAAGGATAACGCTGGTGTG ATTGTCAACAACTAGGGAGAACTTAAAGGCTCGGCA ] [-] EMBL CD113582 [ GGAAAGTTCTGAATTTCACTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGGCAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTGCATTGTCAACAGCAAGGGAGAACTTAAAGGCTCGGCAA ] [-] EMBL CD113616 [ GGAAAGTTCTGAATTTCACTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTGCATTGTCAACAACAAGGGAGAACTTAAAGGCTTGGCAA ] [-] EMBL CD141139 [ ATAATGAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTCGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTT AAAAAAGGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGG ] [-] EMBL CD202485 [ GAACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTTAAAAAAAAGGAAACCAGAACTAAGGAAAAAAGTGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTG ATTGTCAACAACCAGGGAGAACTCAAAGGCTCGGCAATTACCGGTCCTGTGGCTAAAGAATGCGCTGATATGTGGCCAA ] [+] EMBL CD148684 [ GTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTG ATTGTCAACAACAAGGGAGAACTTAAAGGCTCGGCAATTACCGGTCCTGTGGCTAAAGAATGCGCTGATATGTGGCCAAAGATTGCATCAACCGCCAGTT] consensusID : consensus_10307#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence [CATGATGCATGCCCACCGCGGTTAAAAAGTACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTTAAAAAAAGGGAAACCAGAACTAAGGAAAAAAAGTGTTGTATGCTGTGGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTGATTG] [+] EMBL CD197884 [CATGATGCATGCCCACCGCGGTTAAAAAGTACTGTGCTGACAATAGTGGTGCCAAAAATTTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCAACTGGTGACCTCATTGTTTGCTCAGTTAAAAAAAGGGAAACCAGAACTAAGGAAAAAAAGTGTTGTATGCTGTGGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTATTTATTTCGAGGATAACGCTGGTGTGATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10307#0 CTGAACTGCATCATGCCGAAGCGTGGAAGGGGTGGTTCATCTGGTGGAAAGTTCCGAATT 60 consensus_10307#1 ------------------------------------------------------------ consensus_10307#0 TCATTGGCTCTTCCTGTTGGAGCTATAATGAACTGTGCTGACAATAGTGGTGCCAAAAAT 120 consensus_10307#1 -CATGATGCATGCCCACCGCGGTTAAAAAGTACTGTGCTGACAATAGTGGTGCCAAAAAT 59 *** * ** * * ** ** * ***************************** consensus_10307#0 TTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCA 180 consensus_10307#1 TTGTATGTAATAGCCACGTTTGGCGTTCGAGGTCGCTTGAACCGTCTTCCATCAGCAGCA 119 ************************************************************ consensus_10307#0 ACTGGTGACCTCATTGTTTGCTCAGTTAAAAAA-GGGAAACCAGAACTAAGGAAAAAA-G 238 consensus_10307#1 ACTGGTGACCTCATTGTTTGCTCAGTTAAAAAAAGGGAAACCAGAACTAAGGAAAAAAAG 179 ********************************* ************************ * consensus_10307#0 TGTTGTATGCTGTAGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTA 298 consensus_10307#1 TGTTGTATGCTGTGGTTGTCAGACAACGTAAGGCCTTCAGACGTAAAAACGGGGTGTTTA 239 ************* ********************************************** consensus_10307#0 TTTATTTCGAGGATAACGCTGGTGTGATTGTCAACAACAAGGGAGAACTTAAAGGCTCGG 358 consensus_10307#1 TTTATTTCGAGGATAACGCTGGTGTGATTG------------------------------ 269 ****************************** consensus_10307#0 CAATTACCGGTCCTGTGGCTAAAGAATGCGCTGATATGTGGCCAAAGATTGCATCAACCG 418 consensus_10307#1 ------------------------------------------------------------ consensus_10307#0 CCAGTT 424 consensus_10307#1 ------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||