These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10326#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1120 fasta sequence [GAAAGAGATTCACACTGCTGCCTTCATAGATTATTTACAACAGTG-GATTCTT-TGAAAAATTATAATGAATTAATTAAATGGTCGGTCGAATGGGAATAAAAAGAATAA-GAAAAACAAACAGTACATACAAGAATAAGCTGAAGTACACCAGTTTTATGTAAAGCAGATAACTGACAATATTATGTTAATAATTATATAGGTTTTCTAGTATTCAATAATCATAATGTTAATACGTACAACAAATATGAAGTCTATAACAACTTTTTTATCATATTTGGTAAAACAGCGAGTCTCCGTAGTAACAGAAACAGTTAATAGTGTCAATGATATAAGGGAAGTAAAAAGAACAGGGTATTTATTAACTTGTATAACAAACACCACTAATGATAATATGA-CGGCTATATTCAA-GGAGTTTGGGAACTAAGAGTATAATGCTTTTTAAGAAAGAAGACTAGATCTGCACGAATGCATCGACACTGGGAAATATAAACGCTAATATATTATCTACCATGACGAATCAATAAAGGAATGTATAAATCAATCAAAAAACCTGAAAGATAACGGTGGATAGTACAGGACAGGGTATGGTTAGTGTTCCCGAGATTTGTTATGAGAACTATGATGATTAGCTGAATTAGTATCTACAGAAAGAAACCCATTTGAAGCAAGCAAACGATCTTGTTTATCTGAATATGAATGGTCGTTATTACCACTATTATTGTTGGTGTTTGCATTCATATCCTCTGCAAACGTGTCAGTTTCAACAGTACATCGATTTTGAGGTGGATTTACATAAGATGCTGTTAGTAAATGTGTTGGCATCAGTTCCAGCTCAACCAAAAGAGCAAAGTGATCAGAGGGAATATGAACATGTGGACAACCAAGTATTTTCTTTTCCTGAAACCATGGTTCATATATTTGGTCTAAACTGCCCAAAAGCCGAAAGTGTTGTCGCGTGTATAAAACGTAATCTATCATCCCTTTAAAATCATACGTAAAATTTGTCAAACACATGCCCTCAGATTCTCGATATGCACGATTGAAAGTAAAGCGATGTCTTAATGTGTTGCCATTTGTCGC-CCATTTCTCTAAAAGCGCCTCGTGCCGAATCTTGGCTNCG] [+] EMBL CD137064 [GAAAGAGATTCACACTGCTGCCTTCATAGATTATTTACAACAGTG GATTCTTNTGAAAAATTATAATGAATTAATTAAATGGTCGGTCGAACGGGAATAAAAAGAATAAGGAAAAACAAACAGTACATACAAGAATAAGCTGAAGTACACCAGTTTTATGTAAAGCAGATAACTGACAATATTATGTTAATAATTATATAGGTTTTCTAGTATTCAATAATCATAATGTTAATACGTACAACAAATATGAAGTCTATAACAACTTTTTTATCATATTTGGTAAAACAGCGAGTCTCCGTAGTAACAGAAACAGTTAATAGTGTCAATGATATAAGGGAAGTAAAAAGAACAGGGTATTTATTAACTTGTATAACAAACACCA ] [+] EMBL CD076813 [ cgcTCATAGATTATTTACAACAGGG GATTCTT TGAAAAATTATAATGAATTAATTAAATGGTCGGCCGAATGGGAATAAAAAGAATAA AAAAAACAAACAGTCCATACAAAAATAAGCTGAAGTACACCAATTTTATGTAAAGCAAATAACTGACAATATTATGTTAATAATTATATAGGTTTTCTAGTATTCAATAATCATAATGTTAATACGTACAACAAATATGAAGTCTATAACAACTTTTTTATCATATTTGGTAAAACAGCGAGTCTCCGTAGTAACAAAAACAGTTAATAGTGTCAATGATATAAGGGAAGTAAAAAGAACAGGGTATTTATTAACTTGTATAACAAACACCACTAATGATAATATGA CGGCTATATTCAA GGAGTTTGGGAACTAAGAGTATAATGCTTTTTAAGAAAGAAAACTAGATCTGCACGAA ] [+] EMBL CD136895 [ CAACAGTGNGATTCTTNTGAAAAATTATAATGAATTAATTAAATGGTCGGTCGAATGGGAATAAAAAGAATAA GAAAAACAAACAGTACATACAAGAATAAGCTGAAGTACACCAGTTTTATGTAAAGCAGATAACTGACAATATTATGTTAATAATTATATAGGTTTTCTAGTATTCAATAATCATAATGTTAATACGTACAACAAATATGAAGTCTATAACAACTTTTTTATCATATTTGGTAAAACAGCGAGTCTCCGTAGTAACAGAAACAGTTAATAGTGTCAATGATATAAGGGAAGTAAAAAGAACAGGGTATTTATTAACTTGTATAACAAACACCA ] [+] EMBL CD137164 [ CAACAGTG GATTCTT TGAAAAATTATAATGAATTAATTAAATGGTCGGTCGAATGGGAATAAAAAGAATAA GAAAAACAAACAGTACATACAAGAATAAGCTGAAGTACACCAGTTTTATGTAAAGCAGATAACTGACAATATTATGTCAATAATTATATAGGTTTTCTAGTATTCAATAATCATAATGTTAATACGTACAACAAATATGAAGTCTATAACAACTTTTTTATCATATTTGGTAAAACAGCGAGTCTCCGTAGTAACAGAAACAGTTAATAGTGTCAATGATATAAGGGAAGTAAAAAGAACAGGGTATTTATTAACTTGTATAACAAACACCA ] [-] EMBL CD137314 [ AACAGTG GATTCTT TGAAAAATTATAATGAATTAATTAAATGGTCGGTCGAATGGGAATAAAAAGAATAA GAAAAACAAACAGTACATACAAGAATAAGCTGAAGTACACCAGTTTTATGTAAAGCAGATAACTGACAATATTATGTTAATAATTATATAGGTTTTCTAGTATTCAATAATCATAATGTTAATACGTACAACAAATATGAAGTCTATAACAACTTTTTTATCATATTTGGTAAAACAGCGAGTCTCCGTAGTAACAGAAACAGTTAATAGTGTCAATGATATAAGGGAAGTAAAAAGAACAGGGTATTTATTAACTTGTATAACAAACACCAC ] [+] EMBL CD076392 [ TAATGAATTAATTAAATGGTCGGTCGAATGGGAATAAAAAGAATAA GAAAAACAAACAGTACATACAAGAATAAGCTGAAGTACACCAGTTTTATGTAAAGCAGATAACTGACAATATTATGTTAATAATTATATAGGTTTTCTAGTATTCAATAATCATAATGTTAATACGTACAACAAATATGAAGTCTATAACAACTTTTTTATCATATTTGGTAAAACAGCGAGTCTCCGTAGTAACAGAAACAGTTAATAGTGTCAATGATATAAGGGAAGTAAAAAGAACAGGGTATTTATTAACTTGTATAACAAACACCACTAATGATAATATGA CGGCTATATTCAA GGAGTTTGGGAACTAAGAGTATAATGCTTTTTAAGAAAGAAGACTAGATCTGCACGAATGCATCGACACTGGGAAATATAAACGCTAATATATTATCTACCATGACGAATCAATAAAGGAATGTATAAATCAATCAAAAAACCTGAAAGATAACGGTGGATAGTA ] [+] EMBL CD136420 [ TGAGCGGCTATATTCAA GGAGTTTGGGAACTAAGAGTATAATGCTTTTTAAGAAAGAAGACTAGATCTGCACGAATGCATCGACACTGGGAAATATAAACGCTAATATATTATCTACCATG ] [+] EMBL CD166782 [ cATTCAA GGAG TTGGGAACTAAGAGTATAATGCTTTTTAAGAAAGAAGACTAGATCTGCACGAATGCATCGACACTGGGAAATATAAACGCTAATATATTATCTACCATGACGAATCAATAAAGGAATGTATAAATCAATCAAAAAACCTGAAAGATAACGGTGGATAGTACAGGACAGGGTATGGTTAGTGTTCCCGAGATTTGTTATGAGAACTATGATGATTAGCTGAATTAGTATCTACAGAAAGAAACCCATTTGAAGCAAGCAAACGATCTTGTT ] [+] EMBL CD166666 [ acCAACGGAG TTGGGAACTAAGAGTATAATGCTTTTTAAGAAAGAAGACTAGATCTGCACGAATGCATCGACACTGGGAAATATAAACGCTAATATATTATCTACCATGACGAATCAATAAAGGAATGTATAAATCAATCAAAAAACCTGAAAGATAACGGTGGATAGTACAGGACAGGGTATGGTTAGTGTTCCCGAGATTTGTTATGAGAACTATGATGATTAGCTGAATTAGTATCTACAGAAAGAAACCCATTTGAAGCAAGCAAACGATCTTGTT ] [+] EMBL CD166798 [ GAACTAAGAGTATAATGCTTTTTAAGAAAGAAGACTAGATCTGCACGAATGCATCGACACTGGGAAATATAAACGCTAATATATTATCTACCATGACGAATCAATAAAGGAATGTATAAATCAATCAAAAAACCTGAAAGATAACGGTGGATAGTACAGGACAGGGTATGGTTAGTGTTCCCGAGATTTGTTATGAGAACTATGATGATTAGCTGAATTAGTATCTACAGAAAGAAACCCATTTGAAGCAAGCAAACGATCTTGTT ] [-] EMBL CD082800 [ AATGCATCGACACTGGGAAATATAAACGCTAATATATTATCTACCATGACGAATCAATAAAGGAATGTATAAATCAATCAAAAAACCTGAAAGATAACGGTGGATAGTACAGGACAGGGTATGGTTAGTGTTCCCGAGATTTGTTATGAGAACTATGATGATTAGCTGAATTAGTATCTACAGAAAGAAACCCATTTGAAGCAAGCAAACGATCTTGTTTATCTGAATATGAATGGTCGTTATTACCACTATTATTGTTGGTGTTTGCATTCATATCCTCTGCAAACGTGTCAGTTTCAACAGTACATCGATTTTGAGGTGGATTTACATAAGATGCTGTTAGTAAATGTGTTGGCATCAGTTCCAGCTCAACCAAAAGAGCAAAGTGATCAGAGGGAATATGAACATGTGGACAACCAAGTATTTTCTTTTCCTGAAACCATGGTTCATATATTTGGTCTAAACTGCCCAAAAGCCGAAAGTGTTGTCGCGTGTATAAAACGTAATCTATCATCCCTTTAAAATCATACGTAAAATTTGTCAAACACATGCCCTCAGATTCTCGATATGCACGATTGAAAGTAAAGCGATGTCTTAATGTGTTGCCATTTGTCGC CCATTTCTCTAAAAGCGCCTCGTGCCGAATCTTGGCTNCG] [-] EMBL CD083242 [ ATCAATCTAAAAACCTGAAAGATATCGGTGGATAGTACAGGACAGGGTATGGTTAGTGTTCCCGAGATTTGTTATGAGAACTATGATGATTAGCTGAATTAGTATCTACAGAAAGAAACCCATTTGAAGCAAGCAAACGATCTTGTTTATCTGAATATGAATGGTCGTTATTACCACTATTATTGTTGGTGTTTGCATTCATATCCTCTGCAAACGTGTCAGTTTCAACAGTACATCGATTTTGAGGTGGATTTACATAACATGCTGTTAGTAAATGTGTTGGCATCAGTTCCAGCTCAACCAAAAGAGCAAAGTGATCAGAGGGAATATGAACATGTGGACAACCAAGTATTTTCTTTTCCTGAAACCATGGTTCATATATTTGGTGTAAACTGCCCAAAAGCCGAAAGTGTTGTCGCGTGTATAAAACGTAATCTATCATCCCTTTAAAATCATACGTAAAATTTGTCAAACACATGCCCTCAGATTCTCGATATGCACGATTGAAAGTAAAGCGATGTCTTAATGTGTTGCCATTTGTCGCGCCATTTgtg ] [+] EMBL CD181652 [ TACAGAAAGAAACCCATTTGAAGCAAGCAAACGATCTTGTTTATCTGAATATGAATGGTCGTTATTACCACTATTATTGTTGGTGTTTGCATTCATATCCTCTGCAAACGTGTCAGTTTCAACAGTACATCGATTTTGAGGTGGATTTACATAAGATGCTGTTAGTAAATGTGTTGGCATCAGTTCCAGCTCAACCAAAAGAGCAAAGTGATCAGAGGGAATATGAACATGTGGACAACCAAGTATTTTCTTTTCCTGAAACCATGGTTCATATATTTGGTCTAAACTGCCCAAAAGCCGAAAGTGTTGTCGCGTGTATAAAACGT ATCTATCATCCCTTTTAAATCATACGTAAATTTNGTCA ] consensusID : consensus_10326#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [GTTAGTAAATGTGTTGGCATCAGTTCCAGCTCAACCAAAAGAGCAAAGTGATCAGAGGGAATATGAACATGTGGACAACCAAGTATTTTCTTTTCCTGAAACCATGGTTCATATATTTGGTCTAAACTGCCCAAAAGCCGAAAGTGTTGTCGCGTGTATAAAACGTAATCTATCATCCCTTTAAAATCATACCTATAAAAGATAAACATGATTTTCAAAAAATTGCTAAGTACTATTCTTGACGTAGAGCAAACGAAATCTAAGTACTTTATCATCTCCAAGAAAAATGGTACCTTACAACAGACCATTTGTCTTTTGTTTCGAATGAAAAACTAATCATCTGCTCAAATTTGTTTAACATTGGGTTCATTTCTAACGTATTCATAGGATTCTTATACTTGATGAGATATCCCTTCGTGAAATCATTTGTTTGGTGAAAAATATTTGATAACTGAAAGACATCCGGTTTGTAAGTTATTGGCATGGGAGAATATCCTTTATTGTTAAAAACCAAGTGAATACCACTGACACTCATAACGAAGGAAATATAGAATNTTCATCCAATCACTNTGTTTGATTTTAAAAGTTTGTCTTTCTGAATTTAATTGATAACTGACTGCTATTAATAATGCGCTTTTTCAATTGCTGTATCCATCGAATTAGTGCTTTCAATCTCTATACATACT] [+] EMBL CD091384 [GTTAGTAAATGTGTTGGCATCAGTTCCAGCTCAACCAAAAGAGCAAAGTGATCAGAGGGAATATGAACATGTGGACAACCAAGTATTTTCTTTTCCTGAAACCATGGTTCATATATTTGGTCTAAACTGCCCAAAAGCCGAAAGTGTTGTCGCGTGTATAAAACGTAATCTATCATCCCTTTAAAATCATACCTATAAAAGATAAACATGATTTTCAAAAAATTGCTAAGTACTATTCTTGACGTAGAGCAAACGAAATCTAAGTACTTTATCATCTCCAAGAAAAATGGTACCTTACAACAGACCATTTGTCTTTTGTTTCGAATGAAAAACTAATCATCTGCTCAAATTTGTTTAACATTGGGTTCATTTCTAACGTATTCATAGGATTCTTATACTTGATGAGATATCCCTTCGTGAAATCATTTGTTTGGTGAAAAATATTTGATAACTGAAAGACATCCGGTTTGTAAGTTATTGGCATGGGAGAATATCCTTTATTGTTAAAAACCAAGTGAATACCACTGACACTCATAACGAAGGAAATATAGAATNTTCATCCAATCACTNTGTTTGATTTTAAAAGTTTGTCTTTCTGAATTTAATTGATAACTGACTGCTATTAATAATGCGCTTTTTCAATTGCTGTATCCATCGAATTAGTGCTTTCAATCTCTATACATACT] consensusID : consensus_10326#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 233 fasta sequence [TACTGCCCAAAAGCGAAAGTGTTGTCGCGTGTATAAACGTAATCTATCATCCCTTTAAAATCATACGTAAAATTTGTCAAACACATGCCCTCAGATTCTCGATATGCACGATTGAAAGTAAAGCGATGTCTTAATGTGTTGCCATTTGTCGCCCATTTCTCTAAAAGCTTCCAATCTTTGAACATATACTTATGACCATAATTGAGAAAATCACTGTGTGTCAGTGACAAGCT] [+] EMBL CD068411 [TACTGCCCAAAAGCGAAAGTGTTGTCGCGTGTATAAACGTAATCTATCATCCCTTTAAAATCATACGTAAAATTTGTCAAACACATGCCCTCAGATTCTCGATATGCACGATTGAAAGTAAAGCGATGTCTTAATGTGTTGCCATTTGTCGCCCATTTCTCTAAAAGCTTCCAATCTTTGAACATATACTTATGACCATAATTGAGAAAATCACTGTGTGTCAGTGACAAGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10326#0 GAAAGAGATTCACACTGCTGCCTTCATAGATTATTTACAACAGTGGATTCTTTGAAAAAT 60 consensus_10326#2 ------------------------------------------------------------ consensus_10326#1 ------------------------------------------------------------ consensus_10326#0 TATAATGAATTAATTAAATGGTCGGTCGAATGGGAATAAAAAGAATAAGAAAAACAAACA 120 consensus_10326#2 ------------------------------------------------------------ consensus_10326#1 ------------------------------------------------------------ consensus_10326#0 GTACATACAAGAATAAGCTGAAGTACACCAGTTTTATGTAAAGCAGATAACTGACAATAT 180 consensus_10326#2 ------------------------------------------------------------ consensus_10326#1 ------------------------------------------------------------ consensus_10326#0 TATGTTAATAATTATATAGGTTTTCTAGTATTCAATAATCATAATGTTAATACGTACAAC 240 consensus_10326#2 ------------------------------------------------------------ consensus_10326#1 ------------------------------------------------------------ consensus_10326#0 AAATATGAAGTCTATAACAACTTTTTTATCATATTTGGTAAAACAGCGAGTCTCCGTAGT 300 consensus_10326#2 ------------------------------------------------------------ consensus_10326#1 ------------------------------------------------------------ consensus_10326#0 AACAGAAACAGTTAATAGTGTCAATGATATAAGGGAAGTAAAAAGAACAGGGTATTTATT 360 consensus_10326#2 ------------------------------------------------------------ consensus_10326#1 ------------------------------------------------------------ consensus_10326#0 AACTTGTATAACAAACACCACTAATGATAATATGACGGCTATATTCAAGGAGTTTGGGAA 420 consensus_10326#2 ------------------------------------------------------------ consensus_10326#1 ------------------------------------------------------------ consensus_10326#0 CTAAGAGTATAATGCTTTTTAAGAAAGAAGACTAGATCTGCACGAATGCATCGACACTGG 480 consensus_10326#2 ------------------------------------------------------------ consensus_10326#1 ---GTTAGTAAATGTGTTGGCATCAGTTCCAGCTCAACCAAAAGAGCAAAGTGATCAGAG 57 consensus_10326#0 GAAATATAAACGCTAATATATT---ATCTACCATGACGAATCAATAAAGGAATGTATAAA 537 consensus_10326#2 ------------------------------------------------------------ consensus_10326#1 GGAATATGAACATGTGGACAACCAAGTATTTTCTTTTCCTGAAACCATGGTTCATATATT 117 consensus_10326#0 TCAATCAAAAAACCTGAAAGATAACGGTGGATAGTACAGGACAGGGTATGGTTAGTGTTC 597 consensus_10326#2 ------------------------------------------------------------ consensus_10326#1 TGGTCTAAACTGCCCAAAAGCCGAAAGTGTTGTCGCGTGTATAAAACGTAATCTATCATC 177 consensus_10326#0 CCGAGATTTGTTATGAGAACTATGATGATTAGCTGAATTAGTATCTACAGAAAGAAACCC 657 consensus_10326#2 ------------------------------------------------------------ consensus_10326#1 CCTTTAAAATCATACCTATAAAAGATAAACATGATTTTCAAAAAATTGCTAAGTACTATT 237 consensus_10326#0 ATTTGAAGCAAGCAAACGATCT-TGTTTATCTGAATATGAATGGTCGTTATTACCACTAT 716 consensus_10326#2 ------------------------------------------------------------ consensus_10326#1 CTTGACGTAGAGCAAACGAAATCTAAGTACTTTATCATCTCCAAGAAAAATGGTACCTTA 297 consensus_10326#0 TATTGTTGGTGTTTGCATTCATATCCTCTGCAAACGTGTCAGTTTCAACAGTACATCGAT 776 consensus_10326#2 ------------------------------------------------------------ consensus_10326#1 CAACAGACCATTTGTCTTTTGTTTCGAATGAAAAACTAATCATCTGCTCAA---ATTTGT 354 consensus_10326#0 TTTGAGGTGGATTTACATAAGATGCTGTTAGTAAATGTGTTGGCATCAGTTCCAGCTCAA 836 consensus_10326#2 ------------------------------------------------------------ consensus_10326#1 TTAACATTGGGTTCATTTCTAACG-TATTCATAGGATTCTTATACTTGATGAGATATCCC 413 consensus_10326#0 CCAAAAGAGCAAAGTGATCAGAGGGAATATGAACATGTGGACAACCAAGTATTTTCTTTT 896 consensus_10326#2 ------------------------------------------------------------ consensus_10326#1 TTCGTGAAATCATTTGTTTGGTGAAAA-----ATATTTGATAACTGAAAGACATCCGGTT 468 consensus_10326#0 CCTGAAACCATGGTTCATATATTTGGTCTAAACTGCCCAAAA----GCCGAAAGTGTTGT 952 consensus_10326#2 ------------------------------TACTGCCCAAAA----GC-GAAAGTGTTGT 25 consensus_10326#1 TGTAAGTTATTGGCATGGGAGAATATCCTTTATTGTTAAAAACCAAGTGAATACCACTGA 528 * ** **** * * * ** consensus_10326#0 CGCGTGTATAAAACGTAATCTATCATCCCTTTAAAATCA-TACGTAAAATTTGTCAAACA 1011 consensus_10326#2 CGCGTGTATAAA-CGTAATCTATCATCCCTTTAAAATCA-TACGTAAAATTTGTCAAACA 83 consensus_10326#1 CACTCATAACGAAGGAAATATAGAATNTTCATCCAATCACTNTGTTTGATTTTAAAAGTT 588 * * ** * * *** ** ** * ***** * ** **** ** consensus_10326#0 CATGCCCTCAGATTC--TCGATATGC-ACGATTGAAAGTAAAGCGATGTCTTAATGTGTT 1068 consensus_10326#2 CATGCCCTCAGATTC--TCGATATGC-ACGATTGAAAGTAAAGCGATGTCTTAATGTGTT 140 consensus_10326#1 TGTCTTTCTGAATTTAATTGATAACTGACTGCTATTAATAATGCGCTTTTTCAAT-TGCT 647 * *** * **** ** * * *** *** * * * *** ** * consensus_10326#0 GCCATTTGTCGCCCATTTCTCTAAAAGCGCCTCGTGCCGAATCTTGGCTNCG-------- 1120 consensus_10326#2 GCCATTTGTCGCCCATTTCTCTAAAAGCTTCCAATCTTTGAACATATACTTATGACCATA 200 consensus_10326#1 GT-ATCCATCG---AATT-----AGTGCTTTCAATCTCTATACATACT------------ 686 * ** *** * ** * ** * * * consensus_10326#0 --------------------------------- consensus_10326#2 ATTGAGAAAATCACTGTGTGTCAGTGACAAGCT 233 consensus_10326#1 --------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||