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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10329#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence
[GAAGCTACTCTGAAGATATGAAGTATGCTTCTTGGTATTTTCTTTACATACCAAGTATGGATCTTCATCTGCATTTTCGAAGCTTCAGCTGACTGGGAATTGTCATGTTATAACGAGTCCCTGCACATACATTGTGATCCGGAAAAAACAATAATTATTCACGAAGCTCACTTCGGTTATTTTCGTGAAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAATATGACTGCATTCCAACAACACTTGGAACCTCTATTTTTGGCTTTTTCGGTGAAATTATGGATGTCTGACCATATCTTCAACCAATAAATTGTTAAGTGGTATCGTTCATGGCTATAATTTTTTATATCTTTGTTGATCCTCTGACTTCCTGCTTACAATTAGTTTCATTAGTATAATTTGGCTCATTCACATCCAATACTATATGAATGCGGTTATCAGTGTTTTTATCACCAATATGATGGATATATGGGACCAATTCATTC]
[+] EMBL AI976737 [GAAGCTACTCTGAAGATATGAAGTATGCTTCTTGGTATTTTCTTTACATACCAAGTATGGATCTTCATCTGCATTTTCGAAGCTTCAGCTGACTGGGAATTGTCATGTTATAACGAGTCCCTGCACATACATTGTGATCCGGAAAAAACAATAATTATTCACGAAGCTCACTTCGGTTATTTTCGTGAAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAATATGACTGCATTCCAACAACACTTGGAACCTCTATTTTTGGCTTTTTCGGTGAAATTATGGATGTCTGACCATATCTTCAACCAATAAATTGTTAAGTGGTATCGTTCATGGCTATAATTTTTTATATCTTTGTTGATCCTCTGACTTCCTGCTTACAATTAGTTTCATTAGTATAATTTGGCTCATTCACATCCAATACTATATGAATGCGGTTATCAGTGTTTTTATCACCAATATGATGGATATATGGGACCAATTCATTC]
consensusID : consensus_10329#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence
[ATCGGCACGAGGCTCAACCAATCGGTGTCGTGCACACATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAATATGACTGCATTCCAACAACACTTGGAACCTCTATTTTTGGCTTTTTCGGTGAAATTATGGATGTCTGACCATATCTTCAACCAATAAATTGTTAAGTGGTATCGTTCATGGCTATAATTTTTTATATCTTTGTTGATCCTCTGACTTCCTGCTTACAATTAGTTTCATTAGTATAATTTGGCTCATTCACATCCAATACTATATGAATGCGGTTATCAGTGTTTTTATCACCAATATGATGGATATATGGGACCAATTCATTCGGTTGGAAGGTTGCAGGAACCGTAGT]
[+] EMBL CD083439 [ATCGGCACGAGGCTCAACCAATCGGTGTCGTGCACACATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAATATGACTGCATTCCAACAACACTTGGAACCTCTATTTTTGGCTTTTTCGGTGAAATTATGGATGTCTGACCATATCTTCAACCAATAAATTGTTAAGTGGTATCGTTCATGGCTATAATTTTTTATATCTTTGTTGATCCTCTGACTTCCTGCTTACAATTAGTTTCATTAGTATAATTTGGCTCATTCACATCCAATACTATATGAATGCGGTTATCAGTGTTTTTATCACCAATATGATGGATATATGGGACCAATTCATTCGGTTGGAAGGTTGCAGGAACCGTAGT]
consensusID : consensus_10329#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 480 fasta sequence
[AGATATGAAGTATGCTCNNTGGTATTTTCTTNACATACCAAGTATGGATCTTCATCTGCATTTTCGAAGCTTCAGCTGACTGGGAATTGTCATGTTATAACGA--GTCCCTGCACATACATT-GTGAT-CC-GGAAAAAAC-AATAATTATTCACGAAGCTCAC-TTCGG-TTAT-TTTCGTG-AAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA-TATGACTGCATTCCAAC-AACTCTT-GTAACACGAATATCT-AATGAAAATCA-TGTGGATCCTGAACAGATTGGCGGTTATTTAATCAGCTTGA]
[-] EMBL CD181668 [AGATATGAAGTATGCTCNNTGGTATTTTCTTNACATACCAAGTATGGATCTTCATCTGCATTTTCGAAGCTTCAGCTGACTGGGAATTGTCATGTTATAACGA GTCCCTGCACATACA T GTGATNCC GGAAAAAAC AATAATTATTCACGAAGCTCAC TTCGG TTAT TTTCGTG AGGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA TATGACTGCATTCCAAC AACTCTT GTAACACGAATATCT AATGAAAATCA TGTGGATCCTGAACAGATTGGCGGTTATTTAATCAGCTTct]
[-] EMBL CD181638 [ AATTGTCATGTTATAACGA GTCCCTGCACATACATT GTGAT CC GGAAAAAAC AATAATTATTCACGAAGCTCAC TTCGG TTAT TTTCGTG AAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGCTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA TATGACTGCATTCCAAC AACTCTT GTAACACGAATATCT AATGAAAATCA TGTGGATCCTGAACAGATTGGCG ]
[+] EMBL CD181666 [ GTCAAGTTATAACGA GTCCCTGCACATACATTGGTGAT CCGGGAAAAAAC AATAATTATTCACGAAGCTCAC TTCGG TTAT TTTCGTG AAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA TATGACTGCATT CAACAAACTC T GT ACACGAATATCT AATG AAATCA TGTGGATCCTG ACAGATgg ]
[-] EMBL CD181628 [ TCATGTTATAACGA GTCCCTGCACATACATT GTGAT CC GGAAAAAAC AATAATTATTCACGAAGCTCAC TTCGG TTAT TTTCGTG AAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA TATGACTGCATTCCAAC AACTCTT GTAACACGAATATCT AATGAAAATCA TGTGGATCCTGAACAGATTGGCGGTTATTTAATCAGCTTGA]
[-] EMBL CD181709 [ TCATGTTATAACGA GTCCCTGCACATACATT GTGAT CC GGAAAAAAC AATAATTATTCACGAAGCTCAC TTCGG TTAT TTTCGTG AAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA TATGACTGCATTCCAAC AACTCTT GTAACACGAATATCT AATGAAAATCA TGTGGATCCTGAACAGATTGGCG ]
[-] EMBL CD181210 [ TCATG TAT ACGANGGTCCCTGCACATACATG NTGAT CC GGAAANAAC AATAATTACTCACGAAGCTCAC TCGGTTTAT TTTCGTG AAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTTCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA TATGACTGCATTCCAAC AACTCTT GTAACACGAATATCT AATGAAAATCA TGTGGATCCTGAACAGATTGGCG ]
[-] EMBL CD181462 [ TCATGTTATAACGA GTCCCTGCACATACATT GTGCT CC GGAAAAAAC AAT AGTATTCACGAAGCTCAC TTCGG TTAT TTTCGTG AAGTTCTACTTATATCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA TATGACTGCATTCCAAC AACTCTT GTAACACGAATATCT AATGAAAATCA TGTGGATCCTGAACAGATTGGCG ]
[+] EMBL CD181282 [ TCATGTTATAACGA GTCCCTGCACATACATT GTGAT CC GGAAAAAAC AATAATTATTCACGAAGCTCAC TTCGG TTAT TTTCGTG AAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCATGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA TATGACTGCATTCCAAN CACTCTTNGT ACACGAATATCTAAATG AAATCANTGTGGAT CTGAACAGATNGG ]
[-] EMBL CD181406 [ CATG TATAACGA GTCCCTGCACATACATN GTGAT NC GGAANAANC AATAATTATTCACGAAGCTCAC TTCGG TTA TTTCGTGAAAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA ATGACTGCATTCCAAC AACTCTT GTAACACGAATATCT AATGAAAATCA TGTGGATCCTGAACAGATTGGCG ]
[-] EMBL CD181658 [ CATG TATANCGA GTCCCTGCACATACA T GTGAT C GGAAAAAACAAATAATATTTCACGAAGCTCAC TTCGG TATNNTTCGTG AAGTTCTACTATTTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA TATGACTGCATTCCAAC AACTCTT GTAACACGAATATCT AATGAAAATCA TGTGGATCCTGAACAGATTGGCGGTTATTTAATCAGCTTGA]
[-] EMBL CD181237 [ CATGTTAT ACGAG GTCCCTGCACATACA T GTGAT CCNGGAAAAAAC AAT ATTATTCACG AGCTCACTTTCNG GTA TTTCGTGAAAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAATTCTCGAGATTGCTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTTGTAAAACTTCAGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAANAATGACgg ]
[-] EMBL CD139872 [ AGTGCACTATTCATCCGACTTGTCTGCTGATTTGTTGACGAGAGAATGTCCTTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAA TATGACCGCATTCCAAC AACTCTT GTAACACGAATATCT AATGAAAATCA TGTGGATCCTGAACAGATTGGCGGTTATCTAAT ]
consensusID : consensus_10329#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence
[TGCAAACATTATCAAAGGAATCGGAATACCTACAGCACAGAATAGTTTACAACAACCAATTGATTATGAACGAAATAACCTGTTAAGACAGAGATGATTATAATCACATTCTATGAAGTGTTACTAAGTAACAAGTTGAAAATAATAGCTGTAGATACAAAAACTCGAGAAAGTCCTCTAAATATCTCACAGTAAGTTAAGAGAGCAAAATGATAGGGAAAAGATCAATGGATTAAAACTCTTAACAACTCCTTTGTGCTTCTAACTACGGTTCCTGCAACCTTCCAACCGATGAATTGG]
[+] EMBL CD195828 [TGCAAACATTATCAAAGGAATCGGAATACCTACAGCACAGAATAGTTTACAACAACCAATTGATTATGAACGAAATAACCTGTTAAGACAGAGATGATTATAATCACATTCTATGAAGTGTTACTAAGTAACAAGTTGAAAATAATAGCTGTAGATACAAAAACTCGAGAAAGTCCTCTAAATATCTCACAGTAAGTTAAGAGAGCAAAATGATAGGGAAAAGATCAATGGATTAAAACTCTTAACAACTCCTTTGTGCTTCTAACTACGGTTCCTGCAACCTTCCAACCGATGAATTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10329#0 GAAGCTACTCTGAAGATATGAAGTATGCTTCTTGGTATTTTCTTTACATACCAAGTATGG 60
consensus_10329#1 ------------------------------------------------------------
consensus_10329#2 -------------AGATATGAAGTATGCTCNNTGGTATTTTCTTNACATACCAAGTATGG 47
consensus_10329#3 ------------------------------------------------------------
consensus_10329#0 ATCTTCATCTGCATTTTCGAAGCTTCAGCTGACTGGGAATTGTCATGTTATAACGAGTCC 120
consensus_10329#1 ------------------------------------------------------------
consensus_10329#2 ATCTTCATCTGCATTTTCGAAGCTTCAGCTGACTGGGAATTGTCATGTTATAACGAGTCC 107
consensus_10329#3 -----TGCAAACATTATCAAAG--------GAATCGGAATACCTACAGCACAGAATAGTT 47
consensus_10329#0 CTGCACATACATTGTGATCCGGAAAAAACAATAATTATTCACGAAGCTCACTTCGGTTAT 180
consensus_10329#1 ------------------------------------------------------------
consensus_10329#2 CTGCACATACATTGTGATCCGGAAAAAACAATAATTATTCACGAAGCTCACTTCGGTTAT 167
consensus_10329#3 TACAACAACCAATTGATTATGAACGAAATAACCTGTTAAGACAGAGATGATTATAATCAC 107
consensus_10329#0 TTTC-GTGAAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAA-TTCTC 238
consensus_10329#1 ---------------ATCGGCACGAGGCTCAACCAATCGGTGTCGTGCACACA--TTCTC 43
consensus_10329#2 TTTC-GTGAAGTTCTACTTATTTCAAACTCAACCAATCGGTGTCGTGCACACAA-TTCTC 225
consensus_10329#3 ATTCTATGAAGTGTTACTAAGTAACAAGTTGAA-AATAATAGCTGTAGATACAAAAACTC 166
* * * *** * ** * *** ***
consensus_10329#0 GAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTT 298
consensus_10329#1 GAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTT 103
consensus_10329#2 GAGATTGTTGGGTTGATGTGACTGCCAATATATCTAGAAGATGTTCCGGTCATTCTGTTT 285
consensus_10329#3 GAGAAAGTCCTCTAAATAT--CTCACAGTAAGTTAAGAGAGCAAAATGATAG-------- 216
**** ** * ** * ** ** ** * *** * *
consensus_10329#0 GTAAAACTTCAGTGCACTATTCATCC-GACTTGTCTGCTGATTTGTTGACGAGAGAATGT 357
consensus_10329#1 GTAAAACTTCAGTGCACTATTCATCC-GACTTGTCTGCTGATTTGTTGACGAGAGAATGT 162
consensus_10329#2 GTAAAACTTCAGTGCACTATTCATCC-GACTTGTCTGCTGATTTGTTGACGAGAGAATGT 344
consensus_10329#3 GGAAAAGATCAATGGATTAAAACTCTTAACAACTCCTTTGTGCTTCTAACTACGGTTCCT 276
* **** *** ** * ** ** ** ** ** * * ** * * *
consensus_10329#0 CC--TTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAATATGACTGCATTC 415
consensus_10329#1 CC--TTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAATATGACTGCATTC 220
consensus_10329#2 CC--TTTCATAATTGACGATGCGGCTGAGCCAACGTTGTTCGTAGAATATGACTGCATTC 402
consensus_10329#3 GCAACCTTCCAACCGATGAATTGG------------------------------------ 300
* * ** ** ** **
consensus_10329#0 CAACAACACTTGGAACCTCTATTTTTGGCTTTTTCGGTGAAATTATGGATGTCTGACCAT 475
consensus_10329#1 CAACAACACTTGGAACCTCTATTTTTGGCTTTTTCGGTGAAATTATGGATGTCTGACCAT 280
consensus_10329#2 CAACAACTCTTGTAACACGAATATCTAAT------GAAAATCATGTGGAT-CCTGAACAG 455
consensus_10329#3 ------------------------------------------------------------
consensus_10329#0 ATCTTCAACCAATAAATTGTTAAGTGGTATCGTTCATGGCTATAATTTTTTATATCTTTG 535
consensus_10329#1 ATCTTCAACCAATAAATTGTTAAGTGGTATCGTTCATGGCTATAATTTTTTATATCTTTG 340
consensus_10329#2 ATTGGCGGTTATTTAATCAGCTTGA----------------------------------- 480
consensus_10329#3 ------------------------------------------------------------
consensus_10329#0 TTGATCCTCTGACTTCCTGCTTACAATTAGTTTCATTAGTATAATTTGGCTCATTCACAT 595
consensus_10329#1 TTGATCCTCTGACTTCCTGCTTACAATTAGTTTCATTAGTATAATTTGGCTCATTCACAT 400
consensus_10329#2 ------------------------------------------------------------
consensus_10329#3 ------------------------------------------------------------
consensus_10329#0 CCAATACTATATGAATGCGGTTATCAGTGTTTTTATCACCAATATGATGGATATATGGGA 655
consensus_10329#1 CCAATACTATATGAATGCGGTTATCAGTGTTTTTATCACCAATATGATGGATATATGGGA 460
consensus_10329#2 ------------------------------------------------------------
consensus_10329#3 ------------------------------------------------------------
consensus_10329#0 CCAATTCATTC-------------------------- 666
consensus_10329#1 CCAATTCATTCGGTTGGAAGGTTGCAGGAACCGTAGT 497
consensus_10329#2 -------------------------------------
consensus_10329#3 -------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||