cluster # 10342

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Schistosoma mansoni
cluster # 10342 cluster # 10342 Sequences # 15 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10342#0 length = 382 sequences # 14

consensus_10342#1 length = 152 sequences # 1

consensusID : consensus_10342#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 14
consensus length = 382
fasta sequence

                              [TTGAAGTATTTCGCCACGATAGGATGTCTGCTAGTCAGCGGATGAAAGTACAAAATGGGAAGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC-AATATGAATACATGTATTTTGGG-TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC-AAAAAATAACAGAACTATGTGATATTTGTTGG-TCT-CTTTGT-CTGGTTGCG-TTTCCCCATTTCCTTCATCAAGACAAGCGTATGATTCAGTACTTTTGTTGTGTCTTTCCAATGGTTTGTTATCATATGTCTACCTATAAAT]

[+] EMBL CD141783             [TTGAAGTATTTCGCCACGATAGGATGTCTGCTAGTCAGCGGATGAAAGTACAAAATGGGAAGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC AATATGAATACATGTATTTTGGG TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC AAAAAATAACAGAACTATGTGATATTTGTTGG TCT CTTTGT CTGGTTGCG TTTCCCCATTTCCTTCATCAAGACAAGCGTATGATTCAGTACTTTTGTTGTGTCTTTCCAATGGTTTGTTATCATATGTCTAC        ]
[-] EMBL CD141768             [ TGAAGTATTTCGCCACGATAGGATGTCTGCTAGTCAGCGGATGAAAGTACAAAATGGGAAGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC AATATGAATACATGTATTTTGGG TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC AAAAAATAACAGAACTATGTGATATTTGTTGG TCT CTTTGT CTGGTTGCG TTTCCCCATTTCCCTCATCAAGACAAGCGTATGATTCAGTACTTTTGTTGTTTCTTTCCAATGGTTTGTTATCATATGTCTACC       ]
[-] EMBL CD141762             [ TGAAGTATTTCGCCACGATAGGATGTCTGCTAGTCAGCGGATGAAAGTACAAAATGGGAAGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC AATATGAATACATGTATTTTGGG TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC AAAAAATAACAGAACTATGTGATATTTGTTGG TCT CTTTGT CTGGTTGCG TTTCCCCATTTCCTTCATCAAGACAAGCGTATGATTCAGTACTTTTGTTGTTTCTTTCCAATGGTTTGTTATCATATGTCTACC       ]
[+] EMBL CD154524             [                       ATGTCTGCTAGTCAGCGGATGAAAGTACAAAATGGGAAGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC AATATGAATACATGTATTTTGGG TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC AAAAAATAACAGAACTATGAGATATTTGTTGG TCT CTTTGT CTGGTTGCG TTTCCCCATTTCCTTCATCAAGACAAGCGTATGATTCAGTACTTTTGTTGTGTCTTTCCAATGGTTTGTTATCATATGTCTACCTATAAAT]
[+] EMBL BG931574             [                         tTCTGCTACTCAGCGGATGAAAGTACAAAATGGGAAGGCTCACGGTAATGTAGTCAACCGCGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC AATATGAATACATGTATATTGGG TCTAATTGTATACGTTGTCTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTCAAAAAAATAACAGAACTATGTGATATCTGTTGG TCT CTTTGT CTGGTTGCG TATCCCCATTTCCTTCATCAAGACtct                                                                ]
[+] EMBL CD060037             [                           CTGCTAGTCAGCGGATGAAAGTACTAAATGGGAAGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC AATATGAATACATGTATTTTGGG TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC AAAAAATAACAGAACTATGTGATATTTGTTGG TCT CTTTGT CTGGTTGCG TTTCCCCA                                                                                   ]
[+] EMBL CD059781             [                           CTGCTAGTCAGCGGATGAAGGTACAAAATGGGAAGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAAACTCTCAGTCC AATATGAATACATGTATca                                                                                                                                                                                                                                                 ]
[-] EMBL CD157665             [                                                                   CGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC AATATGAATACATGTATTTTGGG TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATCTC AAAAAATAACAGTACTATGTGATATTTGTTGG TCT CTTT                                                                                                        ]
[-] EMBL CD063077             [                                                                     GTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC AATATGAATACATGTATTTTGGG TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC AAAGAATAACAGAACTATGTGATATTTGTTGG TCT CTTTGT CTGGTTGCG TTTCCCCATTTa                                                                               ]
[-] EMBL CD062961             [                                                                     GTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC AATATGAATACATGTATTTTGGG TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC AAAAAATAACAGAACTATGTGATATTTGTTGG TCT CTTAGT CTGG                                                                                                 ]
[-] EMBL CD063063             [                                                                     GTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC AATATGAATACATGTATTTTGGG TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC AAAAAATAACAGAACTATGTGATATTTGTTGGTTCTCCTTTGTNCTGGTTGCGTTTTCCCCATTTa                                                                               ]
[-] EMBL CD062973             [                                                                     GTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACTCTCAGTCC AATATGAATACATGTATTTTGGG TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC AAAAAATAACAGAACTATGTGATATTTGTTGG TCT CTTTGT CTGGTTGCG TTTCCCCATTTagct                                                                            ]
[-] EMBL CD059986             [                                                                                                                       gtTCAGTCCAAATATGAATACATGTATTTTGGGTTCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCCACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC AAAAAATAACAGAACTATGTGATATTTGTTGG TCT CTTTGT CTGGTTGCG TTTCCCCAT                                                                                  ]
[+] EMBL CD193628             [                                                                                                                                              GTATTTTGGG TCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTTC AAAAAATAACAGAACTA                                                                                                                                ]




>consensus_10342#0
TTGAAGTATTTCGCCACGATAGGATGTCTGCTAGTCAGCGGATGAAAGTACAAAATGGGA
AGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGAAGTCCTCAGACT
CTCAGTCCAATATGAATACATGTATTTTGGGTCTAATTGTTTTCGTTGTTTGTGGTTCAG
CTATATTCGAAATCATTCAACATATAAGAATGGCATTCTGATTCGATAACTCAATGATTT
CAAAAAATAACAGAACTATGTGATATTTGTTGGTCTCTTTGTCTGGTTGCGTTTCCCCAT
TTCCTTCATCAAGACAAGCGTATGATTCAGTACTTTTGTTGTGTCTTTCCAATGGTTTGT
TATCATATGTCTACCTATAAAT

consensusID : consensus_10342#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 152
fasta sequence

                              [AGTACAAAATGGGAAGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGGTAATCTATCTGGTTCGTTATAACTCGTGTAGAAGTCCTCAGACTCTCAGTCCAATATGAATACATGTATTTTGGGTCTAATTGTTTTCGT]

[+] EMBL CD181366             [AGTACAAAATGGGAAGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGGTAATCTATCTGGTTCGTTATAACTCGTGTAGAAGTCCTCAGACTCTCAGTCCAATATGAATACATGTATTTTGGGTCTAATTGTTTTCGT]




>consensus_10342#1
AGTACAAAATGGGAAGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACT
GGTAATCTATCTGGTTCGTTATAACTCGTGTAGAAGTCCTCAGACTCTCAGTCCAATATG
AATACATGTATTTTGGGTCTAATTGTTTTCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10342#0      TTGAAGTATTTCGCCACGATAGGATGTCTGCTAGTCAGCGGATGAAAGTACAAAATGGGA 60
consensus_10342#1      ----------------------------------------------AGTACAAAATGGGA 14
                                                                     **************

consensus_10342#0      AGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTG------------- 107
consensus_10342#1      AGGCTCACGGTAATGTAGTCAACCGTGGCAATGTCCCGAAATCACTGGTAATCTATCTGG 74
                       ***********************************************             

consensus_10342#0      -------------------AAGTCCTCAGACTCTCAGTCCAATATGAATACATGTATTTT 148
consensus_10342#1      TTCGTTATAACTCGTGTAGAAGTCCTCAGACTCTCAGTCCAATATGAATACATGTATTTT 134
                                          *****************************************

consensus_10342#0      GGGTCTAATTGTTTTCGTTGTTTGTGGTTCAGCTATATTCGAAATCATTCAACATATAAG 208
consensus_10342#1      GGGTCTAATTGTTTTCGT------------------------------------------ 152
                       ******************                                          

consensus_10342#0      AATGGCATTCTGATTCGATAACTCAATGATTTCAAAAAATAACAGAACTATGTGATATTT 268
consensus_10342#1      ------------------------------------------------------------
                                                                                   

consensus_10342#0      GTTGGTCTCTTTGTCTGGTTGCGTTTCCCCATTTCCTTCATCAAGACAAGCGTATGATTC 328
consensus_10342#1      ------------------------------------------------------------
                                                                                   

consensus_10342#0      AGTACTTTTGTTGTGTCTTTCCAATGGTTTGTTATCATATGTCTACCTATAAAT 382
consensus_10342#1      ------------------------------------------------------