cluster # 1035

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Schistosoma mansoni
cluster # 1035 cluster # 1035 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1035#0 length = 418 sequences # 1

consensus_1035#1 length = 223 sequences # 1

consensusID : consensus_1035#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 418
fasta sequence

                              [CAAAAGTCGTTATATTACTTTTTAAATCACAATGAACTACATACTTCAATTATGCTACGTCATTTGTTTATTCAGCGAGAAAGCCTCTCTCATAAAAAGCAACTTCCTCATTCGTCATCCTTTTCCTCCGAAACTTCGGGTTAATTAGGGAGGGTTCTACTGCCAGCTCTGGTGGCACTGATGATTTTACAACAAAAGTTGAGTTGATGCGAGTTTGTGGATCTCCAAAGTTTCTCGAACTTGAAGAAAACATATGTTAGTCGTATAAATTACATGTTTATGGAGTTTTTCAGCTGACTGCGAAACTTTATTAGTGGCACATGTTTTTTAACCTAAAAGACAGTCATAGTAATCACATTAATCCCACCAATGCGGCTAGATTAGACATTTTCAAGTGACCGCGTGTTTTCTAGAAGGT]

[+] EMBL AW016954             [CAAAAGTCGTTATATTACTTTTTAAATCACAATGAACTACATACTTCAATTATGCTACGTCATTTGTTTATTCAGCGAGAAAGCCTCTCTCATAAAAAGCAACTTCCTCATTCGTCATCCTTTTCCTCCGAAACTTCGGGTTAATTAGGGAGGGTTCTACTGCCAGCTCTGGTGGCACTGATGATTTTACAACAAAAGTTGAGTTGATGCGAGTTTGTGGATCTCCAAAGTTTCTCGAACTTGAAGAAAACATATGTTAGTCGTATAAATTACATGTTTATGGAGTTTTTCAGCTGACTGCGAAACTTTATTAGTGGCACATGTTTTTTAACCTAAAAGACAGTCATAGTAATCACATTAATCCCACCAATGCGGCTAGATTAGACATTTTCAAGTGACCGCGTGTTTTCTAGAAGGT]




>consensus_1035#0
CAAAAGTCGTTATATTACTTTTTAAATCACAATGAACTACATACTTCAATTATGCTACGT
CATTTGTTTATTCAGCGAGAAAGCCTCTCTCATAAAAAGCAACTTCCTCATTCGTCATCC
TTTTCCTCCGAAACTTCGGGTTAATTAGGGAGGGTTCTACTGCCAGCTCTGGTGGCACTG
ATGATTTTACAACAAAAGTTGAGTTGATGCGAGTTTGTGGATCTCCAAAGTTTCTCGAAC
TTGAAGAAAACATATGTTAGTCGTATAAATTACATGTTTATGGAGTTTTTCAGCTGACTG
CGAAACTTTATTAGTGGCACATGTTTTTTAACCTAAAAGACAGTCATAGTAATCACATTA
ATCCCACCAATGCGGCTAGATTAGACATTTTCAAGTGACCGCGTGTTTTCTAGAAGGT

consensusID : consensus_1035#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 223
fasta sequence

                              [NANAGTCGTTAGATTGCGNTATNANTCACATGGACTACATACTTCAATTATGCTACGTCANTTGTTTATTCAGACGAGANAGCCTCTCTCAGNGNAAACAACNTCCTCAATCGTNATCCTTTTCCTCCGAAACNTCGGGATAATTAGGGAGGGTTCTACTGCCAACTCTGGTGGCACTGATGATATAACAACNAGAGNTGAGTTGATGCGAGNTGTGGATCNC]

[-] EMBL SM7072               [NANAGTCGTTAGATTGCGNTATNANTCACATGGACTACATACTTCAATTATGCTACGTCANTTGTTTATTCAGACGAGANAGCCTCTCTCAGNGNAAACAACNTCCTCAATCGTNATCCTTTTCCTCCGAAACNTCGGGATAATTAGGGAGGGTTCTACTGCCAACTCTGGTGGCACTGATGATATAACAACNAGAGNTGAGTTGATGCGAGNTGTGGATCNC]




>consensus_1035#1
NANAGTCGTTAGATTGCGNTATNANTCACATGGACTACATACTTCAATTATGCTACGTCA
NTTGTTTATTCAGACGAGANAGCCTCTCTCAGNGNAAACAACNTCCTCAATCGTNATCCT
TTTCCTCCGAAACNTCGGGATAATTAGGGAGGGTTCTACTGCCAACTCTGGTGGCACTGA
TGATATAACAACNAGAGNTGAGTTGATGCGAGNTGTGGATCNC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1035#0      CAAAAGTCGTTATATTACTTTTTAAATCACAATGAACTACATACTTCAATTATGCTACGT 60
consensus_1035#1      -NANAGTCGTTAGATTGCGNTATNANTCACA-TGGACTACATACTTCAATTATGCTACGT 58
                        * ******** *** *  * * * ***** ** *************************

consensus_1035#0      CATTTGTTTATTCAG-CGAGAAAGCCTCTCTCATAAAAAGCAACTTCCTCATTCGTCATC 119
consensus_1035#1      CANTTGTTTATTCAGACGAGANAGCCTCTCTCAGNGNAAACAACNTCCTCAATCGTNATC 118
                      ** ************ ***** ***********    ** **** ****** **** ***

consensus_1035#0      CTTTTCCTCCGAAACTTCGGGTTAATTAGGGAGGGTTCTACTGCCAGCTCTGGTGGCACT 179
consensus_1035#1      CTTTTCCTCCGAAACNTCGGGATAATTAGGGAGGGTTCTACTGCCAACTCTGGTGGCACT 178
                      *************** ***** ************************ *************

consensus_1035#0      GATGATTTTACAACAAAAGTTGAGTTGATGCGAGTTTGTGGATCTCCAAAGTTTCTCGAA 239
consensus_1035#1      GATGATATAACAACNAGAGNTGAGTTGATGCGAGNT-GTGGATCNC-------------- 223
                      ****** * ***** * ** ************** * ******* *              

consensus_1035#0      CTTGAAGAAAACATATGTTAGTCGTATAAATTACATGTTTATGGAGTTTTTCAGCTGACT 299
consensus_1035#1      ------------------------------------------------------------
                                                                                  

consensus_1035#0      GCGAAACTTTATTAGTGGCACATGTTTTTTAACCTAAAAGACAGTCATAGTAATCACATT 359
consensus_1035#1      ------------------------------------------------------------
                                                                                  

consensus_1035#0      AATCCCACCAATGCGGCTAGATTAGACATTTTCAAGTGACCGCGTGTTTTCTAGAAGGT 418
consensus_1035#1      -----------------------------------------------------------