These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10355#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 704 fasta sequence [CTCCGAGGCCAANAATTCGGCACGAGGCGTAAATGAAACTGTTTAACTACTTACGCAGGAAAGAGTTCAGGGACTACATTACCAGTACCGTAAGTTTTATTGCAGATCATCGCAGTCACTTTTGCTCTTATCGTTTTATAACAAACCCCTCTCTTTAGCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTGCCCAGTCTTGTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAATCAGGAAAAAGTACCGTTCGTAGATCCCCCGCCTAGCTCTTCCATTCTCAGGAATATTATGGTAACCATCCGCTGTATGTCAAACGTAGGCTGTTTACTCGATTCGACATTTTGTTTTTATTTTATCTGAACTAGTAGTTTACATACTATGATAACTAGTGTATGTGCAGTCTCATTGAGTTAATACACACGTCCTGTAATTGCTAANNNAAAAAATAAAATGCATACCTACGTTGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CD082597 [CTCCGAGGCCAANAATTCGGCACGAGGCGTAAATGAAACTGTTTAACTACTTACGCAGGAAAGAGTTCAGGGACTACATTACCAGTACCGTAAGTTTTATTGCAGATCATCGCAGTCACTTTTGCTCTTATCGTTTTATAACAAACCCCTCTCTTTAGCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTGCCCAGTCTTGTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAATCAGGAAAAAGTACCGTTCGTAGATCCCCCGCCTAGCTCTTCCATTCTCAGGAATATTATGGTAACCATCCGCTGTATGTCAAACGTAGGCTGTTTACTCGATTCGACATTTTGTTTTTATTTTATCTGAACTAGTAGTTTACATACTATGATAACTAGTGTATGTGCAGTCTCATTGAGTTAATACACACGTCCTGTAATTGCTAANNNAAAAAA ] [-] EMBL CD076194 [ ACGCAGGAAAGAGTTCAGGGACTACATTACCAGTCCCGTAAGTTTTATTGCAGATCATCGCAGTCACTTTTGCTCTTATCGTTTTATAACAAACCCCTCTCTTTAGCACTTTTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTTTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTCCAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTTTATTTGCTTGCCATTTCGCTAATGAAACTGCCCAGTCTTGTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAATCAGGAAAAAGTCCCGTTCGTAGATCCCCCCCCTAGCTTTTCCATTTTCAGGAATATTATGGTAACCATCCGCTGTATGTCAAACGTAGGCTGTTTACTCGATTCGACATTTTGTTTTTATTTTATCTGAACTAGTAGTTTACATACTATGATAACTAGTGTATGTGCAGTCTCATTGAGTTAATACACACGTCCT ] [-] EMBL AA999378 [ tgcCCCAGTCTTGTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAATAAGGAAAAAGTACCGTTCGTAGATCCCCCGCCTAGCTCTTCCATTCTCAGGAATATTATGGTAACCATCCGCTGTATGTCAAACGTAGGCTGTTTACTCGATTCGACATTTTGTTTTTATTTTATCTGAACTAGTAGTTTACATACTATGATAACTAGTGTATGTGCAGTCTCATTGAGTTAATACACACGTCCT ] [-] EMBL CD141404 [ CCGTTCGTAGATCCCCCGCCTAGCTCTTCCATTCTCAGGAATATTATGGTAACCATCCGCTGTATGTCAAACGTAGGCGGTTTACTCGATTCGACATTTTGTTTTTATTTTATCTGAACTAGTAGTTTACATACTGTGGTAACTAGTGTATGTGCAGTCTCATTGAGTTAA ] [-] EMBL AI395694 [ CGCCTAGCTCTTCCATTCTCAGGAATATTATGGTAACCATCCGCTGTATGTCAAACGTAGGCTGTTTACTCGATTCGACATTTTGTTTTTATTTTATCTGAACTAGTAGTTTACATACTATGATAACTAGTGTATGTGCAGTCTCATTGAGTTAATACACACGTCCTGTAATTGCTAATTTTTTTTGTAAAATGCATACCTACGTTGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_10355#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 415 fasta sequence [GTGCATTTTTGGACTTCGTAAATGAAACTGTTTAACTACTTACGCAGGAAAGAGTTCAGGGACTACATTACCAGTACCCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTGCCCAGTCTTGTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAATCAGGAAAAAGTACCGTTCGTAGATCCCCCGCCTAGCTCTTCCATTCTCAGGAATATTATGGTAACCATCCGCTG] [+] EMBL CD138365 [GTGCATTTTTGGACTTCGTAAATGAAACTGTTTAACTACTTACGCAGGAAAGAGTTCAGGGACTACATTACCAGTACCCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACT ] [+] EMBL CD138313 [GTGCATTTTTGGACTTCGTAAATGAAACTGTTTAACTACTTACGCAGGAAAGAGTTCAGGGACTACATTACCAGTACCCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGCGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACT ] [+] EMBL CD189116 [ ATTTTTGGACTTCGTAAGTGAAACTGTTTAACTACTTACGCAGGAAAGAGTTCAGGGACTACATTACCAGTACCCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTGCCCAGTCTTGTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAATCAGGAAAAAGTACCGTTCGTAGATCCCCCGCCTAGC ] [+] EMBL CD193550 [ GGACTTCGTAAATGAAACTGTTTAACTACTTACGCAGGAAAGAGTTCAGGGACTACATTACCAGTACCCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTGCCC ] [+] EMBL CD138397 [ GGACTTCGTAAATGAAACTGTTTAACTACTTACGCAGGAAAGAGTTCAGGGACTACATTACCAGTACCCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACT ] [-] EMBL CD123503 [ ACTTCGTAAATGAAACTGTTTAACTACTTACGCAGGAAAGAGTTCAGGGACTACATTACCAGTACCCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTGCCCAGTCTTGTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAATCAGGAAAAAGTACCGTTCGTAGATCCCCCGCCTAGC ] [+] EMBL CD140036 [ TTCGTAAATGAAACTGTTTACCTACTTACGCAGGAAAGAGTTCAGGGACTACATTACCAGTACCCACTTCTGGGGCCCTATAGCAAACTGGGGTCTGCCGTTAGCGCCTCTTGGAGAT ] [-] EMBL CD138371 [ AGTTCAGGGACTACATTACCAGTACCCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTG ] [-] EMBL CD142944 [ GGACTACATTACCAGTACNCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTGCCCAGTCTTGTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAATCAGGAAAAAGTACCGTTCGTAGATCCTCCGCCTAGCTCTTCCATTCTCAGGAATATTATGGTAACCATCCGCTG] [-] EMBL CD136313 [ TGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTGCCCAGTCTTGTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAATCAGGAAAAAGTACCGTTCGTAGATCCCCCGCCTAGCTCTTCCATTCTCAGGAATATTATGGTAACC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10355#0 CTCCGAGGCCAANAATTCGGCACGAGGCGTAAATGAAACTGTTTAACTACTTACGCAGGA 60 consensus_10355#1 ---------GTGCATTTTTGGACTT--CGTAAATGAAACTGTTTAACTACTTACGCAGGA 49 * ** * ** ********************************* consensus_10355#0 AAGAGTTCAGGGACTACATTACCAGTACCGTAAGTTTTATTGCAGATCATCGCAGTCACT 120 consensus_10355#1 AAGAGTTCAGGGACTACATTACCAGTACC------------------------------- 78 ***************************** consensus_10355#0 TTTGCTCTTATCGTTTTATAACAAACCCCTCTCTTTAGCACTTCTGGGGTCCTATAGCAA 180 consensus_10355#1 --------------------------------------CACTTCTGGGGTCCTATAGCAA 100 ********************** consensus_10355#0 ACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTG 240 consensus_10355#1 ACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTG 160 ************************************************************ consensus_10355#0 GTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTG 300 consensus_10355#1 GTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTG 220 ************************************************************ consensus_10355#0 TCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTGCCCAGTCTT 360 consensus_10355#1 TCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTGCCCAGTCTT 280 ************************************************************ consensus_10355#0 GTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAA 420 consensus_10355#1 GTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAA 340 ************************************************************ consensus_10355#0 TCAGGAAAAAGTACCGTTCGTAGATCCCCCGCCTAGCTCTTCCATTCTCAGGAATATTAT 480 consensus_10355#1 TCAGGAAAAAGTACCGTTCGTAGATCCCCCGCCTAGCTCTTCCATTCTCAGGAATATTAT 400 ************************************************************ consensus_10355#0 GGTAACCATCCGCTGTATGTCAAACGTAGGCTGTTTACTCGATTCGACATTTTGTTTTTA 540 consensus_10355#1 GGTAACCATCCGCTG--------------------------------------------- 415 *************** consensus_10355#0 TTTTATCTGAACTAGTAGTTTACATACTATGATAACTAGTGTATGTGCAGTCTCATTGAG 600 consensus_10355#1 ------------------------------------------------------------ consensus_10355#0 TTAATACACACGTCCTGTAATTGCTAANNNAAAAAATAAAATGCATACCTACGTTGCTGA 660 consensus_10355#1 ------------------------------------------------------------ consensus_10355#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 704 consensus_10355#1 -------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||