cluster # 10355

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Schistosoma mansoni
cluster # 10355 cluster # 10355 Sequences # 15 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10355#0 length = 704 sequences # 5

consensus_10355#1 length = 415 sequences # 10

consensusID : consensus_10355#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 704
fasta sequence

                              [CTCCGAGGCCAANAATTCGGCACGAGGCGTAAATGAAACTGTTTAACTACTTACGCAGGAAAGAGTTCAGGGACTACATTACCAGTACCGTAAGTTTTATTGCAGATCATCGCAGTCACTTTTGCTCTTATCGTTTTATAACAAACCCCTCTCTTTAGCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTGCCCAGTCTTGTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAATCAGGAAAAAGTACCGTTCGTAGATCCCCCGCCTAGCTCTTCCATTCTCAGGAATATTATGGTAACCATCCGCTGTATGTCAAACGTAGGCTGTTTACTCGATTCGACATTTTGTTTTTATTTTATCTGAACTAGTAGTTTACATACTATGATAACTAGTGTATGTGCAGTCTCATTGAGTTAATACACACGTCCTGTAATTGCTAANNNAAAAAATAAAATGCATACCTACGTTGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CD082597             [CTCCGAGGCCAANAATTCGGCACGAGGCGTAAATGAAACTGTTTAACTACTTACGCAGGAAAGAGTTCAGGGACTACATTACCAGTACCGTAAGTTTTATTGCAGATCATCGCAGTCACTTTTGCTCTTATCGTTTTATAACAAACCCCTCTCTTTAGCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTGCCCAGTCTTGTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAATCAGGAAAAAGTACCGTTCGTAGATCCCCCGCCTAGCTCTTCCATTCTCAGGAATATTATGGTAACCATCCGCTGTATGTCAAACGTAGGCTGTTTACTCGATTCGACATTTTGTTTTTATTTTATCTGAACTAGTAGTTTACATACTATGATAACTAGTGTATGTGCAGTCTCATTGAGTTAATACACACGTCCTGTAATTGCTAANNNAAAAAA                                                                    ]
[-] EMBL CD076194             [                                                    ACGCAGGAAAGAGTTCAGGGACTACATTACCAGTCCCGTAAGTTTTATTGCAGATCATCGCAGTCACTTTTGCTCTTATCGTTTTATAACAAACCCCTCTCTTTAGCACTTTTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTTTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTCCAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTTTATTTGCTTGCCATTTCGCTAATGAAACTGCCCAGTCTTGTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAATCAGGAAAAAGTCCCGTTCGTAGATCCCCCCCCTAGCTTTTCCATTTTCAGGAATATTATGGTAACCATCCGCTGTATGTCAAACGTAGGCTGTTTACTCGATTCGACATTTTGTTTTTATTTTATCTGAACTAGTAGTTTACATACTATGATAACTAGTGTATGTGCAGTCTCATTGAGTTAATACACACGTCCT                                                                                        ]
[-] EMBL AA999378             [                                                                                                                                                                                                                                                                                                                                                            tgcCCCAGTCTTGTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAATAAGGAAAAAGTACCGTTCGTAGATCCCCCGCCTAGCTCTTCCATTCTCAGGAATATTATGGTAACCATCCGCTGTATGTCAAACGTAGGCTGTTTACTCGATTCGACATTTTGTTTTTATTTTATCTGAACTAGTAGTTTACATACTATGATAACTAGTGTATGTGCAGTCTCATTGAGTTAATACACACGTCCT                                                                                        ]
[-] EMBL CD141404             [                                                                                                                                                                                                                                                                                                                                                                                                                                                 CCGTTCGTAGATCCCCCGCCTAGCTCTTCCATTCTCAGGAATATTATGGTAACCATCCGCTGTATGTCAAACGTAGGCGGTTTACTCGATTCGACATTTTGTTTTTATTTTATCTGAACTAGTAGTTTACATACTGTGGTAACTAGTGTATGTGCAGTCTCATTGAGTTAA                                                                                                    ]
[-] EMBL AI395694             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CGCCTAGCTCTTCCATTCTCAGGAATATTATGGTAACCATCCGCTGTATGTCAAACGTAGGCTGTTTACTCGATTCGACATTTTGTTTTTATTTTATCTGAACTAGTAGTTTACATACTATGATAACTAGTGTATGTGCAGTCTCATTGAGTTAATACACACGTCCTGTAATTGCTAATTTTTTTTGTAAAATGCATACCTACGTTGCTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_10355#0
CTCCGAGGCCAANAATTCGGCACGAGGCGTAAATGAAACTGTTTAACTACTTACGCAGGA
AAGAGTTCAGGGACTACATTACCAGTACCGTAAGTTTTATTGCAGATCATCGCAGTCACT
TTTGCTCTTATCGTTTTATAACAAACCCCTCTCTTTAGCACTTCTGGGGTCCTATAGCAA
ACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTG
GTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTG
TCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTGCCCAGTCTT
GTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAA
TCAGGAAAAAGTACCGTTCGTAGATCCCCCGCCTAGCTCTTCCATTCTCAGGAATATTAT
GGTAACCATCCGCTGTATGTCAAACGTAGGCTGTTTACTCGATTCGACATTTTGTTTTTA
TTTTATCTGAACTAGTAGTTTACATACTATGATAACTAGTGTATGTGCAGTCTCATTGAG
TTAATACACACGTCCTGTAATTGCTAANNNAAAAAATAAAATGCATACCTACGTTGCTGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_10355#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 415
fasta sequence

                              [GTGCATTTTTGGACTTCGTAAATGAAACTGTTTAACTACTTACGCAGGAAAGAGTTCAGGGACTACATTACCAGTACCCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTGCCCAGTCTTGTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAATCAGGAAAAAGTACCGTTCGTAGATCCCCCGCCTAGCTCTTCCATTCTCAGGAATATTATGGTAACCATCCGCTG]

[+] EMBL CD138365             [GTGCATTTTTGGACTTCGTAAATGAAACTGTTTAACTACTTACGCAGGAAAGAGTTCAGGGACTACATTACCAGTACCCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACT                                                                                                                                                 ]
[+] EMBL CD138313             [GTGCATTTTTGGACTTCGTAAATGAAACTGTTTAACTACTTACGCAGGAAAGAGTTCAGGGACTACATTACCAGTACCCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGCGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACT                                                                                                                                                 ]
[+] EMBL CD189116             [    ATTTTTGGACTTCGTAAGTGAAACTGTTTAACTACTTACGCAGGAAAGAGTTCAGGGACTACATTACCAGTACCCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTGCCCAGTCTTGTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAATCAGGAAAAAGTACCGTTCGTAGATCCCCCGCCTAGC                                      ]
[+] EMBL CD193550             [          GGACTTCGTAAATGAAACTGTTTAACTACTTACGCAGGAAAGAGTTCAGGGACTACATTACCAGTACCCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTGCCC                                                                                                                                             ]
[+] EMBL CD138397             [          GGACTTCGTAAATGAAACTGTTTAACTACTTACGCAGGAAAGAGTTCAGGGACTACATTACCAGTACCCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACT                                                                                                                                                 ]
[-] EMBL CD123503             [            ACTTCGTAAATGAAACTGTTTAACTACTTACGCAGGAAAGAGTTCAGGGACTACATTACCAGTACCCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTGCCCAGTCTTGTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAATCAGGAAAAAGTACCGTTCGTAGATCCCCCGCCTAGC                                      ]
[+] EMBL CD140036             [              TTCGTAAATGAAACTGTTTACCTACTTACGCAGGAAAGAGTTCAGGGACTACATTACCAGTACCCACTTCTGGGGCCCTATAGCAAACTGGGGTCTGCCGTTAGCGCCTCTTGGAGAT                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD138371             [                                                    AGTTCAGGGACTACATTACCAGTACCCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTG                                                                                                                                                ]
[-] EMBL CD142944             [                                                           GGACTACATTACCAGTACNCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTGCCCAGTCTTGTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAATCAGGAAAAAGTACCGTTCGTAGATCCTCCGCCTAGCTCTTCCATTCTCAGGAATATTATGGTAACCATCCGCTG]
[-] EMBL CD136313             [                                                                                                                                     TGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTGCCCAGTCTTGTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAATCAGGAAAAAGTACCGTTCGTAGATCCCCCGCCTAGCTCTTCCATTCTCAGGAATATTATGGTAACC        ]




>consensus_10355#1
GTGCATTTTTGGACTTCGTAAATGAAACTGTTTAACTACTTACGCAGGAAAGAGTTCAGG
GACTACATTACCAGTACCCACTTCTGGGGTCCTATAGCAAACTGGGGTCTGCCGTTAGCG
GCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTGGTAAAATGACTACAGCACTT
ATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTGTCCAACCTCGAAATATGCTT
CTATTTGCTTGCCATTTCGCTAATGAAACTGCCCAGTCTTGTCAGTTGGTTCGTTATTGC
AACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAATCAGGAAAAAGTACCGTTCG
TAGATCCCCCGCCTAGCTCTTCCATTCTCAGGAATATTATGGTAACCATCCGCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10355#0      CTCCGAGGCCAANAATTCGGCACGAGGCGTAAATGAAACTGTTTAACTACTTACGCAGGA 60
consensus_10355#1      ---------GTGCATTTTTGGACTT--CGTAAATGAAACTGTTTAACTACTTACGCAGGA 49
                                    * **  * **    *********************************

consensus_10355#0      AAGAGTTCAGGGACTACATTACCAGTACCGTAAGTTTTATTGCAGATCATCGCAGTCACT 120
consensus_10355#1      AAGAGTTCAGGGACTACATTACCAGTACC------------------------------- 78
                       *****************************                               

consensus_10355#0      TTTGCTCTTATCGTTTTATAACAAACCCCTCTCTTTAGCACTTCTGGGGTCCTATAGCAA 180
consensus_10355#1      --------------------------------------CACTTCTGGGGTCCTATAGCAA 100
                                                             **********************

consensus_10355#0      ACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTG 240
consensus_10355#1      ACTGGGGTCTGCCGTTAGCGGCTCTTGGAGATTTGAAAAATAACCCAGAAAAAATCAGTG 160
                       ************************************************************

consensus_10355#0      GTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTG 300
consensus_10355#1      GTAAAATGACTACAGCACTTATGTTTTACTCTCTTGCTTTCATGAGGTTCGCATACCTTG 220
                       ************************************************************

consensus_10355#0      TCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTGCCCAGTCTT 360
consensus_10355#1      TCCAACCTCGAAATATGCTTCTATTTGCTTGCCATTTCGCTAATGAAACTGCCCAGTCTT 280
                       ************************************************************

consensus_10355#0      GTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAA 420
consensus_10355#1      GTCAGTTGGTTCGTTATTGCAACTACTGGTATGTGAAAAGCGAAAATGATCGCAATGAAA 340
                       ************************************************************

consensus_10355#0      TCAGGAAAAAGTACCGTTCGTAGATCCCCCGCCTAGCTCTTCCATTCTCAGGAATATTAT 480
consensus_10355#1      TCAGGAAAAAGTACCGTTCGTAGATCCCCCGCCTAGCTCTTCCATTCTCAGGAATATTAT 400
                       ************************************************************

consensus_10355#0      GGTAACCATCCGCTGTATGTCAAACGTAGGCTGTTTACTCGATTCGACATTTTGTTTTTA 540
consensus_10355#1      GGTAACCATCCGCTG--------------------------------------------- 415
                       ***************                                             

consensus_10355#0      TTTTATCTGAACTAGTAGTTTACATACTATGATAACTAGTGTATGTGCAGTCTCATTGAG 600
consensus_10355#1      ------------------------------------------------------------
                                                                                   

consensus_10355#0      TTAATACACACGTCCTGTAATTGCTAANNNAAAAAATAAAATGCATACCTACGTTGCTGA 660
consensus_10355#1      ------------------------------------------------------------
                                                                                   

consensus_10355#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 704
consensus_10355#1      --------------------------------------------