These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10357#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1036 fasta sequence [TTTGTTTGACGGCGGCTGTTACAAAGTCCCTCCCATTTTTTTGAGCAACGTAATCGGCTATAAGGATGACGTTAAATGATACAGAAGTACAACGCCAAATTCGCCACATGATGGCCTTTATAGACCAGGAAGCTCGAGAAAAGGTGGAGGAAATAGATGCCAAAGCCGAAGAAGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAGTACTACTCAAAAAAGGAAAAACAAATAGAACTGACAAAGAAAATTCAGGATTCGAACTT-AAAAAATCAGTCTCGTCTTAAGGTTTTGCAGAGCAGAGAAAACCACATTGAAATGTTGCTTAAAGAAGCCCGGGAACGTTTACGGATGGTCACCAGAGATAGGGATGTTTATCAGAAATGCCTTTCCGGACTTATTTTAGAAGGGCTTTTCCAGTTACTGGAACCAGAAGTTATTATCAAATGCCGTCAAGTTGACCGTGATTTAACGCA-AAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAGACGGGTACTGATTGCAGAGTCACAATTGATAACAACTATTTACCTGACAGCCTCGCTGGTGGAATTGAACTTTACAAT-AAGGATGGGCG-TATTAAAGTAGTAAACACGTTGG-AAAGTCGTTTAGATC-AAATTAGTGAACATTTAATGCCACAACTACGTG-AAATTTTATTCGGAGTAAATGAAGGTCGAAAATTCCGC-AATTAATTAGCTTATTAATCCAATTATCTATTTCCATTTCTCATCGGAGTTAATAGTGGGATTGATAATTACAGCAACCTCTAGCATAATAAATATTTATTTTTATTTTCTT-TCAGGATCTGT-GTTTATTACACTATCTAAATACTT-GATTTATTATTATTACCATTTGNT-GTATT-GTTACATGTAT-GGAATTC-GAAACATTTCAAT-TTTACCATAAATACTACTTTATGATTTTAAATTTACTTTTTTACTTAAATTCATTCTGTGAACCTTTTTTGTTAAATCAAATACAATGTCGG] [-] EMBL CD124337 [TTTGTTTGACGGCGGCTGTTACAAAGTCCCTCCCATTTTTTTGAGCAACGTAATCGGCTATAAGGATGACGTTAAATGATACAGAAGTACAACGCCAAATTCGCCACATGATGGCCTTTATAGACCAGGAAGCTCGAGAAAAGGTGGAGGAAATAGATGCCAAAGCCGAAGAAGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAGTACTACTCAAAAAAGGAAAAACAAATAGAACTGACAAAGAAAATTCAGGATTCGAACTT AAAAAATCAGTCTCGTCTTAAGGTTTTGCAGAGCAGAGAAAACCACATTGAAATGTTGCTTAAAGAAGCCCGGGAACGTTTACGGATGGTCACCAGAGATAGGGATGTTTATCAGAAATGCCTTTCCGGACTTATTTTAGAAGGGCTTTTCCAGTTACTGGAACCAGAAGTTATTATCAAATGCCGTCAAGTTGACCGTGATTTAACGCA AAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAGACGGGTACTGATTGCAGAGTCACAATTGATAACAACTATTTACCTG ] [+] EMBL CD170312 [ TCCCTCCCATTTTTTT AGCAACGTAATCGGCTATAAGGATGACGTTAAATGATACAGAAGTACAACGCCAAATTCGCCACATGATGGCCTTTATAGACCAGGAAGCTCGAGAAAAGGTGGAGGAAATAGATGCCAAAGCCGAAGAAGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAGTACTACTCAAAAAAGGAAAAACAAATAGAACTGACAAAGAAAATTCAGGATTCGAACTT AAAAAATCAGTCTCGTCTTAAGGTTTTGCAGAGCAGAGAAAACCACATTGAAATGTTGCTTAA ] [+] EMBL CD078762 [ CCACATGATGGCCTTTATAGACCAGGAAGCTCGAGAAAAGGTGGAGGAAATAGATGCCAAAGCCGAAGAAGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAGTACTACTCAAAAAAGGAAAAACAAATAGAACTGACAAAGAAAATTCAGGATTCGAACTT AAAAAATCAGTCTCGTCTTAAGGTTTTGCAGAGCAGAGAAAACCACATTGAAATGTTGCTTAAAGAAGCCCGGGAACGTTTACGGATGGTCACCAGAGATAGGGATGTTTATCAGAAATGCCTTTCCGGACTTATTTTAGAAGGGCTTTTCCAGTTACTGGAACCAGAAGTTATTATCAAATGCCGTCAAGTTGACCGTGATTTAACGCA AAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAGACGGGTACTGATTGCAGAGTCACAATTGATAACAACTATTTACCTGACAGCCTCGCTGGTGGAATTGAACTTTACAAT AAGGATGGGCG TATTANAGTAGTANACACGTTGG AAAGTCGTTTAGATC AAATTAGTGAACATTTAATGCCACAACTACGTG AA ] [+] EMBL CD129655 [ ATGGACCAGGAAGCTCGAGAAAAGGTGGAGGAAATATATGCCAAAGCCGAAGAAGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAGTACTACTCAAAAAAGGAAAAACAAATAGAACTGACAAAGAAAATTCAGGATTCGAACTTAAAAAAATCAGTCTCG ] [+] EMBL CD134856 [ GTGGAGGAAATAGATGCCAAAGCCGAAGAAGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAGTACTACTCAAAAAAGGAAAAACAAATAGAACTGACAAAGAAAATTCAGGATTCGAACTT AAAAAATCAGTCTCGTCTTAAGGTTTTGCAGAGCAGAGAAAACCACATTGAAATGTTGCTTAAAGAAGCCCGGGAACGTTTACGGATGGTCACCAGAGATAGGGATGTTTATCAGAAATGCCTTTCCGGACTTATTTTAGAAGGGCTTTTCCAGTTACTGGAACCAGAAGTTATTATCAAATGCCGTCAAGTTGACCGTGATTTAACGCA AAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAGACGGGTACTGATTGCAGAGTCACAATTGATAACAACTATTTACCTGACAGCCTCGCTGGTGGAATTGAACTTTACAAT AA ] [+] EMBL CD195860 [ AGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAGTACTACTCAAAAAAGGAAAAACAAATAGAACTGACAAAGAAAATTCAGGATTCGAACTTAAAAAAATCAGTCTCGTCTTAAGGTTTTGCAGAGCAGAGAAAACCACATTGAAATGTTGCTTAAAGAAGCCCGGGAACGTTTACGGATGGTCACCAGAGATAGGGATGTTTATCAGAAATGCCTTTCCGGACTTATTTTAGAAGGGCTTTTCCAGTTACTGGGACCAGAAGTTATTATCAAATGCCGTCAAGTTGACCGTGATTTAACGCANAAATGT ] [+] EMBL CD185599 [ TCAAAAAAGGAAAAACAAATAGAACTGACAAAGAAAATTCAGGATTCGAACTT AAAAAATCAGTCTCGTCTTAAGGTTTTGCAGAGCAGAGAAAACCACATTGAAATGTTGCTTAAAGAAGCCCGGGAACGTTTACGGATGGTCACCAGAGATAGGGATGTTTATCAGAAATGCCTTTCCGGACTTATTTTAGAAGGGCTTTTCCAGTTACTGGAACCAGAAGTTATTATCAAATGCCGTCAAGTTGACCGTGATTTAACGCA AAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAGACGGGTACTGATTGCAGAGTCACAATTGATAACAACTATTTACCTGACAGCCTCGCTGGTGGAATTGAACTTTACAAT AAGGATGGGCG TATTAAAGTAGTAAACACGTTGG AAAGTCGTTTAGATC AAATTAGTGAACATTTAATGCCACAACTACGTG AAATTT ] [+] EMBL CD178590 [ AATAGAACTGACAAAGAAAATTCAGGATTCGAACTT AAAAAATCAGTCTCGTCTTAAGGTTTTGCAGAGCAGAGAAAACCACATCGAAATGTTGCTTAAAGAAGCCCGGGAACGTTTACGGATGGTCACCAGAGATAGGGATGTTTATCAGAAATGCCTTTCCGGACTTATTTTAGAAGGGCTTTTCCAGTTACTGGAACCAGAAGTTATTATCAAATGCCGTCAAGTTGACCGTGATTTAACGCA AAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAGACGGGTACTGATTGCAGAGTTACAATTGATAA ] [+] EMBL CD078682 [ AAAATTCAGGATTCGAACTT AAAAAATCAGTCTCGTCTTAAGGTTTTGCAGAGCAGAGAAAACCACATTGAAATGTTGCTTAAAGAAGCCCGGGAACGTTTACGGATGGTCACCAGAGATAGGGATGTTTATCAGAAATGCCTTTCCGGACTTATTTTAGAAGGGCTTTTCCAGTTACTGGAACCAGAAGTTATTATCAAATGCCGTCAAGTTGACCGTGATTTAACGCA AAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAGACGGGTACTGATTGCAGAGTCACAATTGATAACAACTATTTACCTGACAGCCTCGCTGGTGGAATTGAACTTTACAAT AAGGATGGGCG TATTAAAGTAGTAAACACGTTGG AAAGTCGTTTAGATC AAATTAGTGAACATTTAATGCCACAACTACGTG AAATTTTATTCGGAGTAAATGAAGGTCGAAAATTCCGC AATTAATTAGCTTATTAATCCAATTATCTATTTCCATTTCTCATCGGAGTTAATAGTGGGATTGATAATTACAGCAACCTCTAGCATAATAAATATTTATTTTTATTTTCTT TCAGTATCTGT GTTTATTACACTATCTNAATACTT GATTTATTATTATTACCATTTGNT GNATT GNTACATG ] [+] EMBL CD162853 [ TGTTTATCAGAAATGCCTTTCCGGACTTATTTTAGAAGGGCTTTTCCAGTTACTGGAACCAGAAGTTATTATCAAATGCCGTCAAGTTGACCGTGATTTAACGCA AAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAGACGGGTACTGATTGCAGAGTCACAATTGATAACAACTATTTACCT ] [+] EMBL SM595 [ gnTTTTCCAGTTACTGGAACCAGAAGTTATTATCAAATGCCGTCAAGTTGACCGTGATTTAACGCA AAATGTNCTACCAGAATGTGTTGCCGCCTATCGAAAGCAGACGGGTACTGATTGCAGAGTCACAATTGATAACAACTATTTACCTGACAGCCTCGCTGGTGGAATTGAACTTTACAAT AAGGATGGGCG TATTAAAGTAGTAAACACGTTGG AAAGTCGTTTAGATC AAATTAGTGAACATTTAATGCCACAACTACGTG AAATTTTATTCGGAGTAAATGAAGGTCGAAAATTCCGCAAATTAATTAGCTTATTAATCCAATTATCTATTTCCATTTCTC ] [-] EMBL CD073145 [ ACTGATTGCAGAGTCACAATTGATAACAACTATTTACCTGACAGCCTCGCTGGTGGAATTGAACTTTACAAT AAGGATGGGGG TATTAAAGTAGTAAACACGTTGG AAAGTCGTTTAGATC AAATTAGTGAACATTTAATGCCACAACTACGTG AAATTTTATTCGGAGTAAATGAAGGTCGAAAATTCCGC AATTAATTAGCTTATTAATCCAATTATCTATTTCCATTTTTCATCGGAGTTAATAGTGGGATTGATAATTACAGCAACCTTTAGCATAATAAAAATTTATTTTTATTTTCTT TCAGGATCTGT GTTTATTACACTATTTAAATACTT GATTTATTATTATTACCATTTGTT GTATT GTTACATGTAT GGAATTC GAAACATTTCAAT TTTACCATAAATACTACTTTATGATTTTAAATTTACTTTTTTACTTAAATTCATTCTGTGAACCTTTTTTGTTAAATCAAATACAATGTCGG] [+] EMBL SM888 [ AATAAAGGATGGGCGTTATTAAAGTAGTAAACACGTTGGNAAAGTCGTTTAGATCNAAATTAGTGAACATTTAATGCCACAACTACGTGAAAATTTTATTCGGAGTAAATGAAGGTCGAAAATTCCGC AATTAATTAGCTTATTAATCCAATTATCTATTTCCATTTCTCATCGGAGTTAATAGTGGGATTGATAATTACAGCAACCTCTAGCATAATAAATATTTATTTNTATTTTCTTNTCAGNATCTGTGGTTTATTACACTATCTAAATACTTGGATTTATTATTATTACCATTTGGTGGTATTGGTTACATGTATGGGAATTCGGAAACAATTCAATCTTTACCAata ] consensusID : consensus_10357#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence [TTAAATGATACAGAAGTACAACGCCAAATTCGCCACATGATGGCCTTTATAGACCAGGAAGCTCGAGAAAAGGTGGAGGAAATAGATGCCAAAGCCGAAGAAGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAGTACTACTCAACCGCTGTNACAATGTCCCTCCCATTTTTTTGAGCAACGTAATCGGCTATAAGGATGACGTTAAATGATACAGAAGTACAACGCCAAATTCGCCACATGATGGCCTTTATAGACCAGGAAGCTCGAGAAAAGGTGGAGGAAATAGATGCCAAAGCCGAAGAAGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAG] [+] EMBL SM570 [TTAAATGATACAGAAGTACAACGCCAAATTCGCCACATGATGGCCTTTATAGACCAGGAAGCTCGAGAAAAGGTGGAGGAAATAGATGCCAAAGCCGAAGAAGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAGTACTACTCAACCGCTGTNACAATGTCCCTCCCATTTTTTTGAGCAACGTAATCGGCTATAAGGATGACGTTAAATGATACAGAAGTACAACGCCAAATTCGCCACATGATGGCCTTTATAGACCAGGAAGCTCGAGAAAAGGTGGAGGAAATAGATGCCAAAGCCGAAGAAGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAG] consensusID : consensus_10357#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence [CCAGAATTCGGCACGAGGGCCGTCAAGTTGACCGTGATTTAACGCAAAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAGACGGGTACTGATTGCAGAGTCACAATTGATAACAACTATTTACCTGACAGCCTCGCTGGTGGAATTGAACTCTACAATAAGGATGGGCGTATTAAAGTAGTAAACACGTTGGAAAGTCGTTTAGATCAAATTAGTGAACATTTAATGCCACAACTACGTGAAATTTTATTCGGAGTAAATGAA] [+] EMBL CD077796 [CCAGAATTCGGCACGAGGGCCGTCAAGTTGACCGTGATTTAACGCAAAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAGACGGGTACTGATTGCAGAGTCACAATTGATAACAACTATTTACCTGACAGCCTCGCTGGTGGAATTGAACTCTACAATAAGGATGGGCGTATTAAAGTAGTAAACACGTTGGAAAGTCGTTTAGATCAAATTAGTGAACATTTAATGCCACAACTACGTGAAATTTTATTCGGAGTAAATGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10357#0 TTTGTTTGACGGCGGCTGTTACAAAGTCCCTCCCATTTTTTTGAGCAACGTAATCGGCTA 60 consensus_10357#2 ------------------------------------------------------------ consensus_10357#1 ------------------------------------------------------------ consensus_10357#0 TAAGGATGACGTTAAATGATACAGAAGTACAACGCCAAATTCGCCACATGATGGCCTTTA 120 consensus_10357#2 ------------------------------------------------------------ consensus_10357#1 ------------------------------------------------------------ consensus_10357#0 TAGACCAGGAAGCTCGAGAAAAGGTGGAGGAAATAGATGCCAAAGCCGAAGAAGAGTTTC 180 consensus_10357#2 ------------------------------------------------------------ consensus_10357#1 ------------------------------------------------------------ consensus_10357#0 AAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAATAATGGAGTACTACTCAA 240 consensus_10357#2 ------------------------------------------------------------ consensus_10357#1 ------------------------------------------------------------ consensus_10357#0 AAAAGGAAAAACAAATAGAACTGACAAAGAAAATTCAGGATTCGAACTTAAAAAATCAGT 300 consensus_10357#2 ------------------------------------------------------------ consensus_10357#1 ------------------------------------------------------------ consensus_10357#0 CTCGTCTTAAGGTTTTGCAGAGCAGAGAAAACCACATTGAAATGTTGCTTAAAGAAGCCC 360 consensus_10357#2 ------------------------------------------------------------ consensus_10357#1 ------------------------------------------------------------ consensus_10357#0 GGGAACGTTTACGGATGGTCACCAGAGATAGGGATGTTTATCAGAAATGCCTTTCCGGAC 420 consensus_10357#2 ------------------------------------------------------------ consensus_10357#1 ---------------------------------------TTAAATGATACAGAAGTACAA 21 consensus_10357#0 TTATTTTAGAAGGGCTTTTCCAGTTACTGGAACCAGAAGTTATTATCAAATGCCGTC-AA 479 consensus_10357#2 --------------------------------CCAGAATTCGGCA-CGAGGGCCGTC-AA 26 consensus_10357#1 CGCCAAATTCGCCACATGATGGCCTTTATAGACCAGGAAGCTCGAGAAAAGGTGGAGGAA 81 **** * * * * * ** consensus_10357#0 GTTGACCGTGATTTAACGCAAAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAG 539 consensus_10357#2 GTTGACCGTGATTTAACGCAAAATGTTCTACCAGAATGTGTTGCCGCCTATCGAAAGCAG 86 consensus_10357#1 ATAGATGCCAAAGCCGAAGAAGAGTTTCAAATAGAA-AAGTCCCGTCTAGTACAAAACCA 140 * ** * ** * *** * **** ** * * * *** * consensus_10357#0 ACGGGTACTGATTGCAGAGTCACAATTGATAAC---AACTATTTACCTGACAGCCTCGCT 596 consensus_10357#2 ACGGGTACTGATTGCAGAGTCACAATTGATAAC---AACTATTTACCTGACAGCCTCGCT 143 consensus_10357#1 ACGGCTCAAAATAATGGAGTACTACTCAACCGCTGTNACAATGTCCCTCCCATTTTTTTG 200 **** * ** **** * * * * ** ** * *** ** * consensus_10357#0 GGTGG---AATTGAACTTTACAATAAGGATGGGCG-TATTAAAGTAG-----TAAACACG 647 consensus_10357#2 GGTGG---AATTGAACTCTACAATAAGGATGGGCG-TATTAAAGTAG-----TAAACACG 194 consensus_10357#1 AGCAACGTAATCGGCTATAAGGATGACGTTAAATGATACAGAAGTACAACGCCAAATTCG 260 * *** * * ** * * * * ** ***** *** ** consensus_10357#0 TTG---GAAAGTCGTT-TAGATCAAATTAGTGAACATTTAATGCCACAACTACGTG--AA 701 consensus_10357#2 TTG---GAAAGTCGTT-TAGATCAAATTAGTGAACATTTAATGCCACAACTACGTG--AA 248 consensus_10357#1 CCACATGATGGCCTTTATAGACCAGGAAGCTCGAGAAAAGGTGGAGGAAATAGATGCCAA 320 ** * * ** **** ** * * * ** ** ** ** ** consensus_10357#0 ATTTTATTCGGAGT---AAATGAAGGTCGAAAATTCCGCAATTAATTAGCTTATTAATCC 758 consensus_10357#2 ATTTTATTCGGAGT---AAATGAA------------------------------------ 269 consensus_10357#1 AGCCGAAGAAGAGTTTCAAATAGAAAAGTCCCGTCTAGTACAAAACCAACGGCTCAAAAT 380 * * **** **** * consensus_10357#0 AATTATCTATTTCCATTTCTCATCGGAGTTAATAGTGGGATTGATAATTACAGCAACCTC 818 consensus_10357#2 ------------------------------------------------------------ consensus_10357#1 AATGGAG----------------------------------------------------- 387 consensus_10357#0 TAGCATAATAAATATTTATTTTTATTTTCTTTCAGGATCTGTGTTTATTACACTATCTAA 878 consensus_10357#2 ------------------------------------------------------------ consensus_10357#1 ------------------------------------------------------------ consensus_10357#0 ATACTTGATTTATTATTATTACCATTTGNTGTATTGTTACATGTATGGAATTCGAAACAT 938 consensus_10357#2 ------------------------------------------------------------ consensus_10357#1 ------------------------------------------------------------ consensus_10357#0 TTCAATTTTACCATAAATACTACTTTATGATTTTAAATTTACTTTTTTACTTAAATTCAT 998 consensus_10357#2 ------------------------------------------------------------ consensus_10357#1 ------------------------------------------------------------ consensus_10357#0 TCTGTGAACCTTTTTTGTTAAATCAAATACAATGTCGG 1036 consensus_10357#2 -------------------------------------- consensus_10357#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||