These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10362#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1303 fasta sequence [CATCGTCTTCACCATTATTATCATCATTTTCCATTTCATCCAGATTTAAATTAGTCCATATTTCTTCAAGTAGATTATCATTATCGGTAGTATCCATTGCCAAAGAATCTAAACGAGTATGCAATTGATTACTGGCTTGTTCACTAACTAATTCCAGTGATTCTAAATGAAGTAATGCACGAGAACATTCTAGTTGATACGTGAAATCACCGCATTTTTGTTTGTTAGATTTATGATTATTTGATTCGGTAGATGTATGCAGTTCATAAGCTTCACGTAGCAACTTAGAAAGATTTGGACAATTATTAATAGAGTTTGGTGGACGTAGGAACTTTCTGGTATAGTTGAAACCAGGATCATTTTCAGCTAACACAGACATCGTTTTACGTCCGATTAATTCCAGAACATCGACACCTCCTTGTACCAAATTTAAACTAGTTGCTTGTAATGAAGAGGTCAATTGTTGGCCAAATGAAGATAAACCACTCCAACCCCATGAAAAATTATTGCTACTTGTCTTTTGTTCTACATCGCGCTTTTCTATGCCTGATGAAATCTGGCTACCACATGTGGAATTGTCAGTTGACTCAAGACTCTTCAAATTTTTAAACAATGAGCAGTTTATGTTGCTTGACTGTGATTCTGATATATCACCTGATTCCTCGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCATTGTCATCGTCATTAGTCCACAATGTATTCCAAACACTGTTCCATGTATCTAATATTACTTTCCTTTCACTTTTCTCTTCAGATTGTCTTTCAACTCCCCGTTTTAGTACCTCGTCATCTGAAGGATTTCCTTGTATTACACCCCCTGGCACAACAAGTGAACTCATCTCATCACACTGACCACGTAGGATGTTTGAAGTAGCTGAAGTTATGAAATCTACTTCTGTTGAAGAGTCAACTGTCGAAAGTCTATCTATCTCAGAGCGAAGTTGAAATGATGTGATGGGATT-TATATTGCCTGCTATTACAGGGAGTTGTTCAGTCATGAATTCGCTCACTTTGGAATCTCTATTAGTGTCGTCATTAATAGCTTGTTCCTCATTATTACTGACCGGAAAATCATTTCGTTTATTTACGAAATTCTCGCCTTCTTTTGAACCTACTCTTTCCATTTTAGATTTTACACATTTTACTGGTGCCTTAACCTTTTTGGAAATACGGAATGATGAAAAGATGAT-TTTATGTTTTTCATTTTTATTAGCGCTAAACCCGACAGATGTGACTTCTTCTCGGAGATTTGTCTT] [+] EMBL CD197446 [CATCGTCTTCACCATTATTATCATCATTTTCCATTTCATCCAGATTTAAATTAGTCCATATTTCTTCAAGTAGATTATCATTATCGGTAGTATCCATTGCCAAAGAATCTAAACGAGTATGCAATTGATTACTGGCTTGTTCACTAACTAATTCCAGTGATTCTAAATGAAGTAATGCACGAGAACATTCTAGTTGATACGTGAAATCACCGCATTTTTGTTTGTTAGATTTATGATTATTTGATTCGGTAGATGTATGCAGTTCATAAGCTTCACGTAGCAACTTAGAAAGATTTGGACAATTATTAATAGAGTTTGGTGGACGTAGGAACTTTCTGGTATAGTTGAAACCAGGATCATTTTCAGCTAACACAGACATCGTTTTACGTCCGATTAATTCCAGAACATCGACACCTCCTTGTACCAAATTTAAACTAGTTGCTT ] [+] EMBL CD127475 [ TCATAAGCTTCACGTAGCAACTTAGAAAGATTTGGACAATTATTAATAGAGTTTGGTGGACGTAAGAACTTTCTGGTATAGTTGAAACCAGGATCATTTTCAGCTAACACAGACATCGTTTTACGTCCGATTAATTCCAGAACATCGACACCTCCTTGTACCAAATTTAAACTAGTTGCTTGTAATGAAGAGGTCAATTGTTGGCCAAATGAAGATAAACCACTCCAACCCCATGAAAAATTATTGCTACTTGTCTTTTGTTCTACATCGCGCTTTTCTATGCCTGATGAAATCTGGCTACCACATGTGGAATTGTCAGTTGACTCAAGACTCTTCAAATTTTTAAACAATGAGCAGTTTATGTTGCTTGACTGTGATTCTGATATATCACCTGATTCCTCGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCATTGTCATCGTCATTAGTCCACAATGTATTCCAAACACTGTTCCATGTATCTAATATTACTTTCCTTTCACTTTTCTCTTCAGATTGTCTTTCAACTCCCCGTTTTAGTACCTCGTCATCTGAAAGATTTCCTTGTATTACACCCCCTGGCACAACAAGTGAACTCATCTCATCACACTGACCACGTAGGATGTTTGAAGTACCTGAAGTTATGAAATCTA ] [-] EMBL CD127180 [ CGCTTTTCTATGCCTGATGAAATCTGGCTACCACATGTGGAATTGTCAGTTGACTCAAGACTCTTCAAATTTTTAAACAATGAGCAGTTTATGTTGCTTGACTGTGATTCTGATATATCACCTGATTCCTCGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCATTGTCATCGTCATTAGTCCACAATGTATTCCAAACACTGTTCCATGTATCTAATATTACTTTCCTTTCACTTTTCTCTTCAGATTGTCTTTCAACTCCCCGTTTTAGTACCTCGTCATCTGAAGGATTTCCTTGTATTACACCCCCTGGCACAACAAGTGAACTCATCTCATCACACTGACCACGTAGGATGTTTGAAGTAGCTGAAGTTATGAAATCTACTTCAGTTGAAGAGTCAACTGTCGAAAGTCTATCTATCTCAGAGCGAAGTTGAAATGATGTGATGGGATT TATATTGCCTGCTATTACAGGGAGTTGTTCAGTCATGAATTCGCTCACTTTGGAATCTCTATTAGTGTCGTCATTAATAGCTTGTTCCTCATTATTACTGACCGGAAAATCATTTCGTTTATTTACGAAATTCTCGCC ] [-] EMBL CD171471 [ CACATGTGGAATTGTCAGTTGACTCAAGACTCTTCAAATTTTTAAACAATGAGCAGTTTATGTTGCTTGACTGTGATTCTGATATATCACCTGATTCCTCGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCATTGTCATCGTCATTAGTCCACAATGTATTCCAAACACTGTTCCATGT ] [+] EMBL CD168204 [ CTCGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCATTGTCATCGTCATTAGTCCACAATGTATTCCAAACACTGTTCCATGTATCTAATATTACTTTCCTTTCACTTTTCTCTTCAGATTGTCTTTCAACTCCCCGTTTTAGTACCTCGTCAT ] [+] EMBL CD139882 [ TCGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCATTGTCATCGTCATTAGTCCACAATGTATTCCAAACACTGTTCCAAGTATCTAATATTACTTTCCTTTCACTTTTCTCTTCAGATTGTCTTTCAACTCCCCGTTTTAGTACCTCGTCATCTGAAGGATTTCCTTGTATTACACCCCCTGGCACAACAAGTGAACTCATCTCATCACACTGACCACGTAGGATGTTTGAAGTAGCTGAAGTTATGAAATCTACTTCTGTTGAAGAGTCAACTGTCGAAAGTCTATCTATCTCAGAGCGAAGTTGAAA ] [+] EMBL CD168212 [ CGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCATTGTCATCGTCATTAGTCCACAATGTATTCCAAACACTGTTCCATGTATCTAATATTACTTTCCTTTCACTTTTCTCTTCAGATTGTCTTTCAACTCCCCGTTTTAGTACCTCGTCAT ] [+] EMBL CD168223 [ CGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCATTGTCATCGTCATTAGTCCACAATGTATTCCAAACACTGTTCCATGTATCTAATATTACTTTCCTTTCACTTTTCTCTTCAGATTGTCTTTCAACTCCCCGTTTTAGTACCTCGTCAT ] [-] EMBL CD171328 [ CCGTTTTAGTACCTCGTCTGCTGAAGGATTTCCTTGTATTACACCCCCTGGCACAACAAGTGAACTCGTCTCATCACACTGACTACGTAGGATGTTTGAAGTAGCTGAAGTTATGAAAgtaata ] [-] EMBL CD139887 [ CAACAAGTGAACTCATCTCATCACACTGACCACGTAGGATGTTTGAAGTAGCTGAAGTTATGAAATCTACTTCTGTTGAAGAGTCAACTGTCGAAAGTCTATCTATCTCAGAGCGAAGTTGAAATGATGTGATGGGATT TATATTGCCTGCTATTACAGGGAGTTGTTCAGTCATGAATTCGCTCACTTTGGAATCTCTATTAGTGTCGTCATTAATAGCTTGTTCCTCATTATTACTGACCGGAAAATCATTACGTTTATTTACGAAATTCTCGCCTTCTTTTGAACCTACTCTTTCCATTTTAGATTTTACACATTTTACTGGTGCCTTAACCTTTTTGGAAAT ] [-] EMBL CD139970 [ AAGTGAACTCATCTCATCACACTGACCACGTAGGATGTTTGAAGTAGCTGAAGTTATGAAATCTACTTCTGTTGAAGAGTCAACTGTCGAAAGTCTATCTATCTCAGAGCGAAGTTGAAATGATGTGATGGGATT TATATTGCCTGCTATTACAGGGAGTTGTTCAGTCATGAATTCGCTCACTTTGGAATCTCTATTAGTGTCGTCATTAATAGCTTGTTCCTCATTATTACTGACCGGAAAATCATTTCGTTTATTTACGAAATTCTCGCCTTCTTTTGAACCTACTCTTTCCATTTTAGATTTTACACATTTTACTGGTGCCTTAGCCTTTTTGGAAAT ] [-] EMBL CD139917 [ TATCTATCTCAGAGCGAAGTTGAAATGATGTGATGGGATTATAT TTGCCTGCTATTACAGGGAGTTGTTCAGTCATGAATTCGCTCACTTTGGAATCTCTATTAGTGACGTCATTAATAGCTTGTTCCTCATTATTACTGACCGGAAAATCATTTCGTTTATTTACGAAATTCTCGCCTTCTTTTGAACCTACTCTTTCCATTTTAGATTTTACACATTTTACTGGTGCCTTAACCTTTTTGGAAAT ] [-] EMBL CD139581 [ GGAGTTGTTCAGTCATGAATTCGCTCACTTTGGAATCTCTATTAGTGTCGTCAATAATAGCTTGTTCCTCATTATTACTGACCGGAAAATCATTACGTTTATTTACGAAATTCTCGCCTTCTTTTGAACCTACTCTTTCCATTTTAGATTTTACACATTTTACTGGTGCCTTAACCTTTTTGGAAATACGGAATGATGAAAAGATGAT T ] [+] EMBL CD163971 [ ATTTCGTTTATTTACGAAATTCTCGCCTTCTTTTGAACCTACTCTTTCCATTTTAGATTTTACACATTTTACTGGTGCCTTAACC TTTTGGAAATACGGAAAGATG AAAGTTGTTGGTTATGTTTTTCATTTTTATTAGCGCTAAACCCGACAGATGTGACTTCTTCTCGGAGATTTGTCTT] consensusID : consensus_10362#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence [ATTTCTTCAAGTAGATATCATATCGNNGTAGTATCCATTGCCAAAGAATCTAAACGAGTATGCAATTGATTACTGGCTTGTTCACTAACTAATTCCAGTGATTCTTAGAAAGATTTGGACAATTATTAATAGAGTTTGGTGGACGTAGGAACTTTCTGGTATAGTTGAAACCAGGATCATTTTCAGCTAACGCAGACATCGTTTTACGTCCGATTAATTCCAGAACATCGACACCTCCTTGTACCAAATTTAAACTAGTTGCTTGTAATGAAGAGGTCAATTGTTGGCCAAATGAAGATAAACCACTCCAACCCCATGAAAAATTATTGCTACTTGTCTTTTGTTCTACATCGCGCTTTTCTATGCCTGATGAAATCTGGCTACCACATGTGGAATTGTCAGTTGACTCAAGACTCTTCAAATTTTTAAACAATGAGCAGTTTATGTTGCTTGACTGTGATTCTGATATATCACCTGATTCCTCGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCATTGTCATCGTCATTAGTCCACAATGTATTCCAAA] [-] EMBL CD200653 [ATTTCTTCAAGTAGATATCATATCGNNGTAGTATCCATTGCCAAAGAATCTAAACGAGTATGCAATTGATTACTGGCTTGTTCACTAACTAATTCCAGTGATTCTTAGAAAGATTTGGACAATTATTAATAGAGTTTGGTGGACGTAGGAACTTTCTGGTATAGTTGAAACCAGGATCATTTTCAGCTAACGCAGACATCGTTTTACGTCCGATTAATTCCAGAACATCGACACCTCCTTGTACCAAATTTAAACTAGTTGCTTGTAATGAAGAGGTCAATTGTTGGCCAAATGAAGATAAACCACTCCAACCCCATGAAAAATTATTGCTACTTGTCTTTTGTTCTACATCGCGCTTTTCTATGCCTGATGAAATCTGGCTACCACATGTGGAATTGTCAGTTGACTCAAGACTCTTCAAATTTTTAAACAATGAGCAGTTTATGTTGCTTGACTGTGATTCTGATATATCACCTGATTCCTCGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCATTGTCATCGTCATTAGTCCACAATGTATTCCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10362#0 CATCGTCTTCACCATTATTATCATCATTTTCCATTTCATCCAGATTTAAATTAGTCCATA 60 consensus_10362#1 -----------------------------------------------------------A 1 * consensus_10362#0 TTTCTTCAAGTAGATTATCAT-TATCGGTAGTATCCATTGCCAAAGAATCTAAACGAGTA 119 consensus_10362#1 TTTCTTCAAGTAGAT-ATCATATCGNNGTAGTATCCATTGCCAAAGAATCTAAACGAGTA 60 *************** ***** * ********************************* consensus_10362#0 TGCAATTGATTACTGGCTTGTTCACTAACTAATTCCAGTGATTCTAAATGAAGTAATGCA 179 consensus_10362#1 TGCAATTGATTACTGGCTTGTTCACTAACTAATTCCAGTGATTCT--------------- 105 ********************************************* consensus_10362#0 CGAGAACATTCTAGTTGATACGTGAAATCACCGCATTTTTGTTTGTTAGATTTATGATTA 239 consensus_10362#1 ------------------------------------------------------------ consensus_10362#0 TTTGATTCGGTAGATGTATGCAGTTCATAAGCTTCACGTAGCAACTTAGAAAGATTTGGA 299 consensus_10362#1 ----------------------------------------------TAGAAAGATTTGGA 119 ************** consensus_10362#0 CAATTATTAATAGAGTTTGGTGGACGTAGGAACTTTCTGGTATAGTTGAAACCAGGATCA 359 consensus_10362#1 CAATTATTAATAGAGTTTGGTGGACGTAGGAACTTTCTGGTATAGTTGAAACCAGGATCA 179 ************************************************************ consensus_10362#0 TTTTCAGCTAACACAGACATCGTTTTACGTCCGATTAATTCCAGAACATCGACACCTCCT 419 consensus_10362#1 TTTTCAGCTAACGCAGACATCGTTTTACGTCCGATTAATTCCAGAACATCGACACCTCCT 239 ************ *********************************************** consensus_10362#0 TGTACCAAATTTAAACTAGTTGCTTGTAATGAAGAGGTCAATTGTTGGCCAAATGAAGAT 479 consensus_10362#1 TGTACCAAATTTAAACTAGTTGCTTGTAATGAAGAGGTCAATTGTTGGCCAAATGAAGAT 299 ************************************************************ consensus_10362#0 AAACCACTCCAACCCCATGAAAAATTATTGCTACTTGTCTTTTGTTCTACATCGCGCTTT 539 consensus_10362#1 AAACCACTCCAACCCCATGAAAAATTATTGCTACTTGTCTTTTGTTCTACATCGCGCTTT 359 ************************************************************ consensus_10362#0 TCTATGCCTGATGAAATCTGGCTACCACATGTGGAATTGTCAGTTGACTCAAGACTCTTC 599 consensus_10362#1 TCTATGCCTGATGAAATCTGGCTACCACATGTGGAATTGTCAGTTGACTCAAGACTCTTC 419 ************************************************************ consensus_10362#0 AAATTTTTAAACAATGAGCAGTTTATGTTGCTTGACTGTGATTCTGATATATCACCTGAT 659 consensus_10362#1 AAATTTTTAAACAATGAGCAGTTTATGTTGCTTGACTGTGATTCTGATATATCACCTGAT 479 ************************************************************ consensus_10362#0 TCCTCGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCA 719 consensus_10362#1 TCCTCGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCA 539 ************************************************************ consensus_10362#0 TTGTCATCGTCATTAGTCCACAATGTATTCCAAACACTGTTCCATGTATCTAATATTACT 779 consensus_10362#1 TTGTCATCGTCATTAGTCCACAATGTATTCCAAA-------------------------- 573 ********************************** consensus_10362#0 TTCCTTTCACTTTTCTCTTCAGATTGTCTTTCAACTCCCCGTTTTAGTACCTCGTCATCT 839 consensus_10362#1 ------------------------------------------------------------ consensus_10362#0 GAAGGATTTCCTTGTATTACACCCCCTGGCACAACAAGTGAACTCATCTCATCACACTGA 899 consensus_10362#1 ------------------------------------------------------------ consensus_10362#0 CCACGTAGGATGTTTGAAGTAGCTGAAGTTATGAAATCTACTTCTGTTGAAGAGTCAACT 959 consensus_10362#1 ------------------------------------------------------------ consensus_10362#0 GTCGAAAGTCTATCTATCTCAGAGCGAAGTTGAAATGATGTGATGGGATTTATATTGCCT 1019 consensus_10362#1 ------------------------------------------------------------ consensus_10362#0 GCTATTACAGGGAGTTGTTCAGTCATGAATTCGCTCACTTTGGAATCTCTATTAGTGTCG 1079 consensus_10362#1 ------------------------------------------------------------ consensus_10362#0 TCATTAATAGCTTGTTCCTCATTATTACTGACCGGAAAATCATTTCGTTTATTTACGAAA 1139 consensus_10362#1 ------------------------------------------------------------ consensus_10362#0 TTCTCGCCTTCTTTTGAACCTACTCTTTCCATTTTAGATTTTACACATTTTACTGGTGCC 1199 consensus_10362#1 ------------------------------------------------------------ consensus_10362#0 TTAACCTTTTTGGAAATACGGAATGATGAAAAGATGATTTTATGTTTTTCATTTTTATTA 1259 consensus_10362#1 ------------------------------------------------------------ consensus_10362#0 GCGCTAAACCCGACAGATGTGACTTCTTCTCGGAGATTTGTCTT 1303 consensus_10362#1 -------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||