These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10363#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 886 fasta sequence [CTGGTACGAGGACGATACCGTTTATGTTCTGAACCTGCAGACATCTTTTCGAATGATGAAAGCACTTCGGAAGAGGTAGAAAGTGACACTGAAACTGTAGACCTGGGACTTCCAAATGATCCTGAAGTTGAAGCGCTTGAATCTATAGCCAAGAAAGAGACTAAAGAAGAAGCCAGATTTAGAATGTTTAAAGAAGCAATGAAATCGGCTCCTGACCAAGTCATACGATTTCATAGAGGTGGTAAACCCATTTGGCTAAGTGACAATCCTGTAGAAGTTGAAAAATGTGAAGTTTGCAGTGCTGAACGTGTTTTCGAATTTCAGGTTACTCCTCAAATATTGTGTTAC-TTAAAATTGGATAAAGTTGGTGAATTAAATCCAGATTTCGGTTCGCTTTACGTTTTTACTTGTTCTAATTCATGTGAACTTCCTAGAAGAAATAATAATACTATTATTGAATATCAACGTGAAATTGTCATTCGTCAAATGGTCCCCTAAACGATTAACAATTATTCTTATGTGAAGGTTCAGAGGGCTTGACTTTAAAATAAAATTTGATCCGAGTACAGCTTTGATCAGATATTGATATAGAATTGTGTAAATCAGTACCACTTTAATTCTTTACTTTACTTTACAACTATCAGTTATTATAAAAACATAAAGTT-CTCCCTCACTATTCTGTTAAACGTTGAAACGCATCTGTTTTCGTTGTTATTTATTGTT-AATCTGTTGATTTAATCTTTGTAAAAAATATTTAGAATTTTATTGCTACCACTAAACTGATCGACAACGGTATTAAATTTTTGAATCCTGAAACGAT-AT-CCTGTCTC-TCATA-TAACTNG-NATGGCTACACCA-TGAT-TGTCTG-ATCG-TGACGT-AGAAGATAATT] [+] EMBL CD082155 [CTGGTACGAGGACGATACCGTTTATGTTCTGAACCTGCAGACATCTTTTCGAATGATGAAAGCACTTCGGAAGAGGTAGAAAGTGACACTGAAACTGTAGACCTGGGACTTCCAAATGATCCTGAAGTTGAAGCGCTTGAATCTATAGCCAAGAAAGAGACTAAAGAAGAAGCCAGATTTAGAATGTTTAAAGAAGCAATGAAATCGGCTCCTGACCAAGTCATACGATTTCATAGAGGTGGTAAACCCATTTGGCTAAGTGACAATCCTGTAGAAGTTGAAAAATGTGAAGTTTGCAGTGCTGAACGTGTTTTCGAATTTCAGGTTACTCCTCAAATATTGTGTTAC TTAAAATTGGATAAAGTTGGTGAATTAAATCCAGATTTCGGTTCGCTTTACGTTTTTACTTGTTCTAATTCATGTGAACTTCCTAGAAGAAATAATAATACTATTATTGAATATCAACGTGAAATTGTCATTCGTCAAATGGTCCCCTAAACGATTAACAATTATTCTTATGTGAAGGTTCAGAGGGCTTGACTTTAAAATAAAATTTGATCCGAGTACAGCTTTGATCAGATATTGATATAGAATTGTGTAAATCAGTACCACTTTAATTCTTTACTTTACTTTACAACTATCAGTTATTATAAAAACATAAAGTT CTCCCTCACTATTCTGTTAAACGTTGAAACGCATCTGTTNTCGTTGGTATTTATTGGT AATCTGGTGATTTAATCTTTGTAAAAAATA TTAGAA TTTATTGCTACCACT AACTGATCGACAAC GTATTAAATNNNTGAAT CTGAAACGAT AT CCTGTCTC TCATA TAACTNG NATGGCTACACCA TGAT TGTCTG ATCG TGACGT AGAAGAT ] [+] EMBL CD137049 [ cccttcaTAGAAAGTGACACTGAAACTGTAGACCTGGGACTTCCAAATGATCCTGAAGTTGAAGCGCTTGAATCTATAGCCAAGAAAGAGACTAAAGAAGAAGCCAGATTTAGAATGTTTAAAGAAGCAATGAAATCGGCTCCTGACCAAGTCATACGATTTCATAGAGGTGGTAAACCCATTTGGCTAAGTGACAATCCTGTAGAAGTTGAAAAATGTGAAGTTTGCAGTGCTGAACGTGTTTTCGAATTTCAGGTTACTCCTCAAATATTGTGTTAC TTAAAATTGGATAAAGTTGGTGAATTAAATCCAGATTTCGGTTCGCTTTACGTTTTTACTTGTTCTAATTCATGTGAACTTCCTAGAAG AATAATAATACTATTATTGAATATCAACGGGAAATTGTCATTCGTCAAATGGTCCCCTAAACGATTAACA ] [+] EMBL CD141383 [ AATGAAATCGGCTCCTGACCAAGTCATACGATTTCATAGAGGTGGTAAACCCATTTGGCTAAGTGACAATCCTGTAGAAGTTGAAAAATGTGAAGTTTGCAGTGCTGAACGCGTTTTCGAATTTCAGGTTACTCCTCAAATATTGTGTTAC TTAAAATTGGATAAAGTTGGTGAATTAAATCCAGATTTCGGTTCGCTTTACGTTTTTACTTGTTCTAATTCATGCGAACTTCCTAGCAGAAATAATAATACTATTATTGAATATCAACGTGAAA ] [-] EMBL CD075771 [ TTCGAATTTCAGGTTACTCCTCAAATATTGTGTTAC TTAAAATTGGATAAAGTTGGTGAATTAAATCCAGATTTCGGTTCGCTTTACGTTTTTACTTGTTCTAATTCATGTGAACTTCCTAGAAGAAATAATAATACTATTATTGAATATCAACGTGAAATTGTCATTCGTCAAATGGTCCCCTAAACGATTAACAATTATTCTTATGTGAAGGTTCAGAGGGCTTGACTTTAAAATAAAATTTGATCCGAGTACAGCTTTGATCAGATATTGATATAGAATTGTGTAAATCAGTACCACTTTAATTCTTTACTTTACTTTACAACTATCAGTTATTATAAAAACATAAAGTT CTCCCTCACTATTCTGTTAAACGTTGAAACGCATCTGTTTTCGTTGTTATTTATTGTT AATCTGTTGATTTAATCTTTGTAAAAAATATTTAGAATTTTATTGCTACCACTAAACTGATCGACAACGGTATTAAATTTTTGAATCCTGAAACGATAATCCCTGTCTCTTCATATTAACTTGTAATGTCTACACCATTGATATGTCTGTATCGATGACGTAAGAAGATAATT] [-] EMBL CD141408 [ ggTACTCCTCAAATATTGTG TACTTTAAAATTGGATAAAGTTGGTGAATTAAATCCAGATTTCGGTTCGCTNTACGTTTTTACTTGTTCTAATTCATGTGAACTTCCTAGAAGAAATAATAATACTATTATTGAACATCAACGTGAAATTGTCATTCGTCAAATGGTCCCCTAAACGATTAACAATTATTCTTATGTGAAGGTTCAGAGGGCTTGACTTTAAAATAAAATTTGATCCGAGTACAGCTTTGATCAGATATTGATATAGAATTGTGTAAATCAGTACCACTTTAATTCTTTACTTTACTTTACAACTATCAGTTATTATAAAAACAT ] [-] EMBL CD133844 [ TTCGTCAAATGGTCCCCTAAACGATTAACAATTATTCTTATGTGAAGGTTCAGAGGGCTTGACTTTAAAATAAAATTTGATCCGAGTACAGCTTTGATCAGATATTGATATAGAATTGTGTAAATCAGTACCACTTTAATTCTTTACTTTACTTTACAACTATCAGTTATTATAAAAACATAAAGTT CTCCCTCACTATTCTGTTAAACGTTGAAACGCATCTGTTTTCGTTGTTATTTATTGTT AATCTGTTGATTTA ] [-] EMBL SMT14651 [ ATAGAATTGTGTAAATCAGTACCACTTTAATTCTTTACTTTACTTTACAACTATCAGTTATTATAAAAACGTAAAGTTCCTCCCTCACTATTCTGTTAAACGTTGAAACGCATCTGTTTCCGTTGTTATTTATTGTTAAATCTGTTGATTT ATCTTTGTAAAAAATATTTAGAATTTTATTGCTACCACTAAACTGATCGACAACGGTATTAAATTTTTGAATtt ] consensusID : consensus_10363#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 330 fasta sequence [ACTCTATTCCATGGTCTGGTAAATATTCATCTATCTGCCCAATATGTGGATGCAAAGCAGACAAAACTTGTTCAAAGTGTAAAACCACTTCTTATTGTTCTAAAATGCACCAGGTTCTAGACTGGAAACGACACAAGTTAGAATGTGGTTCAAAGTGTCAAGATGTCATGTTATTATTCGAA-GAAAATAGTTTCTTACTTCCT-GAATACCGTTTATGTTCTGAACCTGCAGACAACTTTTCGAATGATGAAAGCACTTCGGAAGAGGTAGAAAGTGACACTGAAACTGTAGACCTGGGACTTCCAAATGATCCTGAAGTTGAAGCGCTTG] [-] EMBL CD189232 [ACTCTATTCCATGGTCTGGTAAATATTCATCTATCTGCCCAATATGTGGATGCAAAGCAGACAAAACTTGTTCAAAGTGTAAAACCACTTCTTATTGTTCTAAAATGCACCAGGTTCTAGACTGGAAACGACACAAGTTAGAATGTGGTTCAAAGTGTCAAGATGTCATGTTATTATTCGAA GAAAATAGTTTCTTACTTCCT GAATACCGTTTATGTTCTGAACCTGCAGACAACTTTTCGAATGATGAAAGCACTTCGGAAGAGGTAGAAAGTGACACTGAAACTGTAGACCTGGGACTTCCAAATGATCCTGAAGTTGAAGCGCTTG] [+] EMBL SM6681 [ AATATGTGGATGNAAAGNAGACAAAACTTGTTCAAAGTGTAAAACCACTTCTTATTGTTCTAAAATGCACCAGGTTCTAGACTGGAAACGACACAAGTTAGAATGTGGTTCAAAGTGTCAAGATGTCATGTTATTATTCGAAGGAAAATAGTTTCTTACTTCCTGGAATACCGTTTATGTTCTGAACCTGCAGACAACTTTTCGAATGATGAAAGCACTTCGGAAGAGGTAGAAAGTGACACTGAAACTGTAGACCTGGGACTTCCANATGATCCTGANGTTGAAGCGCTT ] consensusID : consensus_10363#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 258 fasta sequence [CCTGAGAACGAATTTCCCAGTCGCGAAATGTTAAACTCGATGATAAAGGCTAACTCTATTCCATGGTCTGGTAAATATTCATCTATCTGCCCAATATGTGGATGCAAAGCAGACAAAACTTGTTCAAAGTGTAAAACCACTTCTTATTGTTCTAAAATGCACCAGGTTCTAGACTGGAAACGACACAAGTTAGAATGTGGTTCAAAGTGTCAAGATGTCATGTTATTATTCGAGAGAAATCCATTGGACCAACGGGGG] [-] EMBL CD063401 [CCTGAGAACGAATTTCCCAGTCGCGAAATGTTAAACTCGATGATAAAGGCTAACTCTATTCCATGGTCTGGTAAATATTCATCTATCTGCCCAATATGTGGATGCAAAGCAGACAAAACTTGTTCAAAGTGTAAAACCACTTCTTATTGTTTTAAAATGCACCAGGTTCTAGACTGGAAACGACACAAGTTAGAATGTGGTTCAAAGTGTCAAGATGTCA ] [+] EMBL CD063451 [ GAACGAATTTCCCAGTCGCGAAATGTTAAACTCGATGATAAAGGCTAACTCTATTCCATGGTCTGGTAAATATTCATCTATCTGCCCAATATGTGGATGCAAAGCAAACAAAACTTGTTCAAAGTGTAAAACCACTTCTTATTGTTCTAAAATGCACCAGGTTCTAGACTGGAAACGACACAAGTTAGAATGTGGTTCAAAGTGTCAAGATGTCATG ] [+] EMBL CD063508 [ GAACGAATTTCCCAGTCGCGAAATGTTAAACTCGATGATAAAGGCTAACTCTATTCCATGGTCTGGTAAATATTCATCTATCTGCCCAATATGTGGATGCAAAGCAGACAA ] [-] EMBL CD063546 [ AACGAATTTCCCAGTCGCGAAATGTTAAACTCGATGATAAAGGCTAACTCTATTCCATGGTCTGGTAAATATTCATCTATCTGCCCAATATGTGGATGCAAAGCAGACAAAACTTGTTCAAAGTGTAAAACCACTTCTTATTGTTCTAAAATGCACCAGGTTCTAGACTGGAAACGACACAAGTTAGAATGTGGTTCAAAGTGTCAAGATGTCATGTTATTATTCGAGAGAAATCCATTGGACCAACGGGGG] [-] EMBL CD063383 [ AACGAATTTCCCAGTCGCGAAATGTTAAACTCGATGATAAAGGCTAACTCTATTCCATGGTCTGGTAAATATTCATCTATCTGCCCAATATGTGGATGCAAAGCAGACAAAACTTGTTCAAAGTGTAAAACCACTTCTTATTGTTCTAAAATGCACCAGGTTCTAGACTGGAAACGACACAAGTTAGAATGTGGTTCAAAGTGTCAAGATGTCA ] [+] EMBL CD063378 [ gatattAATTTCCCAGTCGCGAAATGTTAAACTCGATGATAAAGGCTAACTCTATTCCATGGTCTGGTAAATATTCATCTATCTGCCCAATATGTGGATGCAAAGCAGACAAAACTTGTTCAAAGTGTAAAACCACTTCTTATTGTTCTAAAATGCACCAGGTTCTAGACTGGAAACGACACAAGTTAGAATGTGGTTCAAAGTGTCAAGATGTC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10363#1 ------------------------------------------------------------ consensus_10363#2 ------------------------------------------------------------ consensus_10363#0 CTGGTACGAGGACGATACCGTTTATGTTCTGAACCTGCAGACATCTTTTCGAATGATGAA 60 consensus_10363#1 ------------------------------------------------------------ consensus_10363#2 ------------------------------------------------------------ consensus_10363#0 AGCACTTCGGAAGAGGTAGAAAGTGACACTGAAACTGTAGACCTGGGACTTCCAAATGAT 120 consensus_10363#1 ------------------------------------------------------------ consensus_10363#2 ----------------------------------------------------CCTGAGAA 8 consensus_10363#0 CCTGAAGTTGAAGCGCTTGAATCTATAGCCAAGAAAGAGACTAAAGAAGAAGCCAGATTT 180 consensus_10363#1 ---------------------------------------------ACTCTATTCCATGGT 15 consensus_10363#2 CGAAT-TTCCCAGTCGCGAAATGTTAAACTCGATGATAAAGGCTAACTCTATTCCATGGT 67 consensus_10363#0 AGAATGTTTAAAGAAGCAATGAAATCGGCTCC-TGACCAAGTC--ATACGATTTCATAGA 237 * * *** *** * consensus_10363#1 C-TGGTAAAT--ATTCATCTATCTGCCCAATATGTGGATGC-AAAGCAGACAAAACTTGT 71 consensus_10363#2 C-TGGTAAAT--ATTCATCTATCTGCCCAATATGTGGATGC-AAAGCAGACAAAACTTGT 123 consensus_10363#0 GGTGGTAAACCCATTTGGCTAAGTGACAATCCTGTAGAAGTTGAAAAATGTGAAGTTTGC 297 ******* *** *** ** * * *** ** * ** * ** *** consensus_10363#1 -----TCAAAGTGTAAAACCACTTCTTATTGTTC-TAAAATGCACCAG-GTTCTAGACTG 124 consensus_10363#2 -----TCAAAGTGTAAAACCACTTCTTATTGTTC-TAAAATGCACCAG-GTTCTAGACTG 176 consensus_10363#0 AGTGCTGAACGTGTTTTCGAATTTCAGGTTACTCCTCAAATATTGTGTTACTTAAAATTG 357 * ** **** * *** ** ** * **** * * * ** consensus_10363#1 GAAACGAC--ACAAGTTAGAATGTGGTTCAAA---GTGTCAAGATGTCA--TGTTATTAT 177 consensus_10363#2 GAAACGAC--ACAAGTTAGAATGTGGTTCAAA---GTGTCAAGATGTCA--TGTTATTAT 229 consensus_10363#0 GATAAAGTTGGTGAATTAAATCCAGATTTCGGTTCGCTTTACGTTTTTACTTGTTCTAAT 417 ** * * *** * * ** * * * * * * * **** * ** consensus_10363#1 TCGAAGAAAATAGTTTCTTACTTCCTGAATACCGTTTATGTTCTGAACCTGCAGACAACT 237 consensus_10363#2 TCGAGAGAAATCCATTGGACCAACGGGGG------------------------------- 258 consensus_10363#0 TCATGTGAACTTCCTAGAAGAAATAATAATACTATTATTGAATATCAACGTGAAATTGTC 477 ** ** * * consensus_10363#1 TTTCGAATGATGAAAGCACTTCGGAAGAGGTAGAAAGTGACACTGAAACTGTAGACCTGG 297 consensus_10363#2 ------------------------------------------------------------ consensus_10363#0 ATTCGTCAAATGGTCCCCTAAACGATTAACAATTATTCTTATGTGAAGGTTCAGAGGGCT 537 consensus_10363#1 GACTTCCAAATGATCCTGAAGTTGAAGCGCTTG--------------------------- 330 consensus_10363#2 ------------------------------------------------------------ consensus_10363#0 TGACTTTAAAATAAAATTTGATCCGAGTACAGCTTTGATCAGATATTGATATAGAATTGT 597 consensus_10363#1 ------------------------------------------------------------ consensus_10363#2 ------------------------------------------------------------ consensus_10363#0 GTAAATCAGTACCACTTTAATTCTTTACTTTACTTTACAACTATCAGTTATTATAAAAAC 657 consensus_10363#1 ------------------------------------------------------------ consensus_10363#2 ------------------------------------------------------------ consensus_10363#0 ATAAAGTTCTCCCTCACTATTCTGTTAAACGTTGAAACGCATCTGTTTTCGTTGTTATTT 717 consensus_10363#1 ------------------------------------------------------------ consensus_10363#2 ------------------------------------------------------------ consensus_10363#0 ATTGTTAATCTGTTGATTTAATCTTTGTAAAAAATATTTAGAATTTTATTGCTACCACTA 777 consensus_10363#1 ------------------------------------------------------------ consensus_10363#2 ------------------------------------------------------------ consensus_10363#0 AACTGATCGACAACGGTATTAAATTTTTGAATCCTGAAACGATATCCTGTCTCTCATATA 837 consensus_10363#1 ------------------------------------------------- consensus_10363#2 ------------------------------------------------- consensus_10363#0 ACTNGNATGGCTACACCATGATTGTCTGATCGTGACGTAGAAGATAATT 886 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||