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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10368#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1152 fasta sequence
[ACAAGAAGCATTGGCTCGCGGTGACGATGATGAGGCAAAAGAAAACGTGCAGACTAAAGAAACCGATGAAAATCCGGGGAAGAAGAAAGCCAAACGAAGAAAGCTCAAACGTAGTGCTTCCATAACGATCACGGGTAAACGAAAGCGCCTGGGTGGTATCGGTTCAGGTGATGTTGCAAATGAAGTTGCACGTCGTGTCTACGAAATAATGGAGAAACATAAGGAGAACTTCTTTGTCATTCGATTACACCCTCAAAATTCTGTCGCTGCACTTCCACCAATTAAGGATCCGGACCCGCTTATTAACTCAGAGCTAATGGAATGTCGTGGTGCTTTCTTAGAAAAAGCTCGTGAAAAGCACCTAGAATTTTCATCACTACGACGTGCTAAATATTCCACTTTGGTGATGTTATATGAATTACATAATGAAAATCGTCAACCTCTAATGTACACTTGCAATGTTTGTAGTGCACAACTGGAAACTCCATGGCATTGTAAACAATGTATCGAATATGACTTATGTCCCCGATGCTATGAAACCGAAAACCATCCTCATCCTATGGTGAAAATAGGTATTGGACTTGACGATTGTAATAAAGGACAAGAGCCAAGTAACGATTCAACTATTCAGGAATCAGGAAGAGATAAATTGAGTCGTTGGGTAAAAGCCTTAGGCCATAGCTGTTATTGTCGTGATGCAAATTGTCGTGTATATGCATGTAAGACAATGAAATATCAGGTGCAACACTTTCGTGTACATTCAACAGATCG-AAATCAGTGTTCTGTTTGTCGATTCATCTATTATTTATGTTGCTATCATTCCAAAACTTGCCATGAATTGAAATGTCTCGTACCTTTATGTCCTAAACTTAAAGCCAAAATGAAGCAACAGCAAAAGCAACAACGCCTCAAACAAACACAAATGTTACGCAGACGTATGGCCACGATGCAGCGCTGTAACAGCATGACTCCTAATCATCAACCAACTCCCCCACCATCTCAAAATTATCAACAATGTTCGCAATCTTCGACATCTGATTGCATATCTTCTCCTATGTCTGTACCTATGCAGTCATCACCATTTGCTTCTACAGCTGTTACTACTGTTTCCTACAACC-TACCTATGCCNCA-TCACGAAGTCAATCTTCTATC]
[-] EMBL CD125005 [ACAAGAAGCATTGGCTCGCGGTGACGATGATGAGGCAAAAGAAAACGTGCAGACTAAAGAAACCGATGAAAATCCGGGGAAGAAGAAAGCCAAACGAAGAAAGCTCAAACGTAGTGCTTCCATAACGATCACGGGTAAACGAAAGCGCCTGGGTGGTATCGGTTCAGGTGATGTTGCAAATGAAGTTGCACGTCGTGTCTACGAAATAATGGAGAAACATAAGGAGAACTTCTTTGTCATTCGATTACACCCTCAAAATTCTGTCGCTGCACTTCCAC ]
[+] EMBL CD186041 [ TTCAGGTGATGTTGCAAATGAAGTTGCACGTCGTGTCTACGAAATAATGGAGAAACATAAGGAGAACTTCTTTGTCATTCGATTACACCCTCAAAATTCTGTCGCTGCACTTCCACCAATTAAGGATCCGGACCCGCTTATTAACTCAGAGCTAATGGAATGTCGTGGTGCTTTCTTAGAAAAAGCTCGTGAAAAGCACCTAGAATTTTCATCACTACGACGTGCTAAATATTCCACTTTGGTGATGTTATATGAATTACATAATGAAAATCGTCAACCTCTAATGTACACTTGCAATGTTTGTAGTGCACAACTGGAAACTCCATGGCATTGTAAACAATGTATCGAATA ]
[-] EMBL CD183680 [ TTCAGGTGATGTTGCAAATGAAGTTGCACGTCGTGTCTACGAAATAATGGAGAAACATAAGGAGAACTTCTTTGTCATTCGATTACACCCTCAAAATTCTGTCGCTGCACTTCCACCAATTAAGGATCCGGACCCGCTTATTAACTCAGAGCTAATGGAATGTCGTGGTGCTTTCTTAGAAAAAGCTCGTGAAAAGCACCTAGAATTTTCATCACTACGACGTGCTAAATATTCCACTTTGGTGATGTTATATGAATTACATAATGAAAATCGTCAACCTCTAATGTACACTTGCAATGTTTGTAGTGCACAACTGGAAACTCCATGGCATTGTAAACAATGTATCGA ATGACTTATGTCCCCGATGCTATGAAACCGAAAACCATCCTCATCCTATGGTGAAAATAGGTATTGGACTTGACGATTGTAATAAAGGACAAGAGCCAAGTAACGATTCAACT ]
[+] EMBL CD095120 [ CTTAGAAAAAGCTCGTGAAAAGCACCTAGAATTTTCATCACTACGACGTGCTAAATATTCCACTTTGGTGATGTTATATGAATTACATAATGAAAATCGTCAACCTCTAATGTACACTTGCAATGTTTGTAGTGCACAACTGGAAACTCCATGGCATTGTAAACAATGTATCGAATATGACTTATGTCCCCGATGCTATGAAACCGAAAACCATCCTCATCCTATGGTGAAAATAGGTATTGGACTTGACGATTGTAATAAAGGACAAGAGCCAAGTAACGATTCAACTATTCAGGAATCAGGAAGAGATAAATTGAGTCGTTGGGTAAAAGCCTTAGGCCATAGCTGTTATTGTCGTGATGCAAATTGTCGTGTATACGCATGTAAGACAATGAAATATCAGGTGCAACACTTTCGTGTACATTCAACAGATCG AAATCAGTGTTCTGTTTGTCGATTCATCTATTATTTATGTTGCTATCATTCCAAAACTTGCCATGAATTGAAATGTCTCGTACCTTTATGTCCTAAACTTAAAGCCAAAATGAAGCAACAGCAAAAGCAACAACGCCTCANACAAAC ]
[+] EMBL CD115732 [ ATCACTACGACGTGCTAAATATTCCACTTTGGTGATGTTATATGAATTACATAATGAAAATCGTCAACCTCTAATGTACACTTGCAATGTTTGTAGTGCACAACTTGAAACTCCATGGCATTGTAAACAATGTATCGAATATGACTTATGTCCCCGATGCTATGAAACCGAAAACCATCCTCATCCTATGGTGAAAATAGGTATTGGACTTGACGATTGTAATAAAGGACAAGAGCCAAGTAACGATTCAACTATTCAGGAATCAGGAAGAGATAAATTGAGTCGTTGGGTAAAAGCCTTAGGCCATAGCTGTTATTGTCGTGATGCAAATTGTCGTGTATATGCATGTAAGACAATGAAATATCAGGTGCAACACTTTCGTGTACATTCAACAGATCG AAATCAGTGTTCTGTTTCGCGATTCATCTATTATTTATGTTGCT ]
[+] EMBL CD169501 [ TTGCAATGTTTGTAGTGCACAACTGGAAACTCCATGGCATTGTAAACAATGTATCGAATATGACTTATGTCCCCGATGCTATGAAACCGAAAACCATCCTCATCCTATGGTGAAGATAGGTATTGGACTTGACGATTGTAATAAAGGACAAGAGCCAAGTAACGATTCAACTATTCAGGAATCAGGAAGAGATAAATTGAGTCGTTGGGTAAAAGCCTTAGGCCATAGCTGTTATTGTCGTGATGCAAATTGTCGTGTATATGCATGTAAGACAATGAAATATCAGGTGCAACACTTTCGTGTACATTCAACAGATCG AAATCAGTGTTCTGTTTGTCGATTCATCTATTATTTATGTTGCTATCATT ]
[-] EMBL CD129402 [ ATTGTAAACAATGTATCGAATATGACTTATGTCCCCGATGCTATGAAACCGAAAACCATCCTCATCCTATGGTGAAAATAGGTATTGGACTTGACGATTGTAATAAAGGACAAGAGCCAAGTAACGATTCAACTATTCAGGAATCAGGAAGAGATAGATTGAGTCGTTGGGTAAAAGCCTTAGGCCATAGCTGTNANNGTNNNNNNCCNNATTTTTGTGTTTATTCATGTAAGACAAANAAATATCAGGTGCAACACTTTTGTGTACATTCAACACACAGAAAAACAG GTTCTGTTTGTCGATTCATCTATTATTTATGTTGCTATCATTCCAAAACATGCCATGAATTGAAATGTCTCGTACCTTTATGTCCTAAACTTAAAGCCAAAATGAAGCAACAGCAAAAGCAACAACGCCTCAAACAAACACAAATGTTACGCAGACGTATGGCCACGATGCAGCGCTGTAACAGCATGACTCCTAATCATCAACCAACTCCCCCACCATCTCAAAATTATCAACAATGTTCGCAATCTTCGACATCTGATTGCATAT ]
[+] EMBL CD127291 [ anACACTTTCGTGTTCATTCAACAGATCG AATCAGTGTTCTGTTTGTCGATTCATCTATTATTTATGTTGCTATCATTCCAAAACTTGCCATGAATTGAAATGTCTCGTACCTTTATGTCCTAAACTTAAGGCCAAAATGAAGCAACAGCAAAAGCAACAACGCCTCAAACAAACACAAATGTTACGCAGACGTATGGCCACGATGCAGCGCTGTAACAGCATGACTCCTAATCATCAACCAACTCCCCCACCATCTCAAAATTATCAACAATGTTCGCAATCTTCGACATCTGATTGCATATCTTCTCCTATGTCTGTACCTATGCAGTCATCACCATTTGCTTCTACGGCTGTTACTACTGTTTC ]
[+] EMBL CD127209 [ TCGTGTACATTCAACAGATCG AAATCAGTGTTCTGTTTGTCGATTCATCTATTATTTATGTTGCTATCATTCCAAAACTTGCCATGAATTGAAATGTCTCGTACCTTTATGTCCTAAACTTAAAGCCAAAATGAAGCAACAGCAAAAGCAACAACGCCTCAAACAAACACAAATGTCACGCAGACGTATGGCCACGATGCAGCGCTGTAACAGCATGACTCCTAATCATCAACCAACTCCCCCACCATCTCAAAATTATCAACAATGTTCGCAATCTTCGACATCTGATTGCATATCTTCTCCTATGTCTGTACCTATGCAGTCATCACCATTTGCTTCTACAGCTGTTACTACT ]
[-] EMBL CD128042 [ CGTGTACATTCAACAGATCG AAATCAGTGTTCTGTTTGTCGATTCATCTATTATTTATGTTGCTATCATTCCAAAACTTGCCATGAATTGAAATGTCTCGTACCTTTATGTCCTAAACTTAAAGCCAAAATGAAGCAACAGCAAAAGCAACAACGCCTCAAACAAACACAAATGTTACGCAGACGTATGGCCACGATGCAGCGCTGTAACAGCATGACTCCTAATCATCAACCAACTCCCCCACCATCTCAAAATTATCAACAATGTTCGCAATCTTCGACATCTGATTGCATATCTTCTCCTATGTCTGTACCTATGCAGTCATCACCATTTGCTTCTACAGCTGTTACTACTGTTTCCTACAACC TACCGATTCNNCA ]
[-] EMBL CD127949 [ CGTGTACATTCAACAGATCG AAATCAGTGTTCTGTTTGTCGATTCATCTATTATTTATGTTGCTATCATTCCAAAACTTGCCATGAATTGAAATGTCTCGTACCTTTATGTCCTAAACTTAAAGCCAAAATGAAGCAACAGCAAAAGCAACAACGCCTCAAACAAACACAAATGTTACGCAGACGTATGGCCACGATGCAGCGCTGTAACAGCATGACTCCTAATCATCAACCAACTCCCCCACCATCTCAAAATTATCAACAATGTTCGCAATCTTCGACATCTGATTGCATATCTTCTCCTATGTCTGTACCTATGCAGTGGGCACCATTTGCTTCTACAGCTGTTAC A TGTTTCCTACAACC TACCTATGgct ]
[-] EMBL CD066435 [ G AAATCAGTGTTCTGTTNGTCGATTCATCTATTATTTATGTGGCTATCATTCCAAAACTTGCCATGAATTGAAATGTCTCGTACCTTTATGTCCTAAACTTAAAGCCAAAATGAAGCAACAGCAAAAGCAACAACGCCTCAAACAAACACAAATGTTACGCAGACGTATGGCCACGATGCAGCGCTGTAACAGTATGACTCCTAATCATCAACCAACTCCCCCACCATCTCAAAATTATCAACAATGTTCGCAACCTTCGACATCTGATTGCATATCTTCTCCTATGTCTGTACCTATGCAGTCATCACCATTTGCTTCTAC ]
[-] EMBL CD153193 [ CATCTATTATGTATGTTGCTATCATTCCAAAGCTTGCCATGAATTGAAATGTCTCGTACCTTTATGTCCTAAACTTAAAGCCAAAATGAAGCAACAGCAAAAGCAGCAACGCCTCAAACAAACACAAATGTTACGCAGACGTATGGCCACGATGCAGCGCTGTAACAGCATGACTCCTAATCATCAACCAACTCCCCCACCATCTCAAAATTATCAACGATGTTCGCAATCTTCGACATCTGATTGCATATCTTCTCCTATGTCTGTACCTATGCAGTCATCACCATTTGCTTATACAGCTGTTACTACTGTTTCCTACAACCTTACCTCT CCACATTCACGAAGTCAATCTTCTATC]
consensusID : consensus_10368#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 421 fasta sequence
[AGCCGATGCAGGTGACGTCATTATTCGTGTTCTTGCGGCAGCAGATAAAACTGTTGAAGTTAAATCTGGTATGAAAGCTCGGTTCTGTGATAACGGAGAAATGCCTGAGTCTTTTCCGTACAGAGTGAAAGCCATTTTCGCATTTCAGGAAATCGACGGTCAGGAAGTATGTTTTTTTGGTCTTCACGTTCAGGAATATGGATCAGAATGCCCACTTCCTAATACCAGAAGGGTTTATGTGGCTTATTTAGATTCCGTTTACTTTTTTCGTCCTAAGCAATTTCGCACAGAGATATATCATGAACTTTTGGTTGGTTACATTCACTATGCAAAGTTACTTGGTTTCACAATGGCTCATATATGGGCTTGTCCGCCTAGCGAAGGTGATGATTACATTTTTCATATGCATCCACCTGATCAG]
[+] EMBL CD179838 [AGCCGATGCAGGTGACGTCATTATTCGTGTTCTTGCGGCAGCAGATAAAACTGTTGAAGTTAAATCTGGTATGAAAGCTCGGTTCTGTGATAACGGAGAAATGCCTGAGTCTTTTCCGTACAGAGTGAAAGCCATTTTCGCATTTCAGGAAATCGACGGTCAGGAAGTATGTTTTTTTGGTCTTCACGTTCAGGAATATGGATCAGAATGCCCACTTCCTAATACCAGAAGGGTTTATGTGGCTTATTTAGATTCCGTTTACTTTTTTCGTCCTAAGCAATTTCGCACAGAGATATATCATGAACTTTTGGTTGGTTACATTCACTATGCAAAGTTACTTGGTTTCACAATGGCTCATATATGGGCTTGTCCGCCTAGCGAAGGTGATGATTACATTTTTCATATGCATCCACCTGATCAG]
consensusID : consensus_10368#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence
[CGATCTCCGCGTCGGATGGCTTTCTTCTTCCCCGGATTTTCATCGGTTTCTTTAGTCTGCACGTTTTCTTTTGCCTCATCATCATCGTCACCGCGAGCCAATGCTTCTTGTTCCTGTTTTCTTTTAGCATCTTCTTCATCCATTTCCTTAAATATTTCTTCCAAAGTATTTGGCCAAAAGTCACCTTCGAAATAGGCAAGTTCAGATGGAGAGATCATATGGGACTCATTAGCATCCTGACAGATATCTTTGTAATCCACCACAATGCGTTCAATGAGTGCTTTTTTTAGCATTTTTTGATACCATTCTTGTAACCTCTTAGGTTTAGGAATTTTCTGATCAGGTGGATGCATATGAAAAATGTAATC]
[+] EMBL CD111765 [CGATCTCCGCGTCGGATGGCTTTCTTCTTCCCCGGATTTTCATCGGTTTCTTTAGTCTGCACGTTTTCTTTTGCCTCATCATCATCGTCACCGCGAGCCAATGCTTCTTGTTCCTGTTTTCTTTTAGCATCTTCTTCATCCATTTCCTTAAATATTTCTTCCAAAGTATTTGGCCAAAAGTCACCTTCGAAATAGGCAAGTTCAGATGGAGAGATCATATGGGACTCATTAGCATCCTGACAGATATCTTTGTAATCCACCACAATGCGTTCAATGAGTGCTTTTTTTAGCATTTTTTGATACCATTCTTGTAACCTCTTAGGTTTAGGAATTTTCTGATCAGGTGGATGCATATGAAAAATGTAATC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10368#0 ACAAGAAGCATTGGCTCGCGGTGACGATGATGAGGCAAAAGAAAACGTGCAGACTAAAGA 60
consensus_10368#2 ------------------------------------------------------------
consensus_10368#1 ------------------------------------------------------------
consensus_10368#0 AACCGATGAAAATCCGGGGAAGAAGAAAGCCAAACGAAGAAAGCTCAAACGTAGTGCTTC 120
consensus_10368#2 ------------------------------------------------------------
consensus_10368#1 ------------------------------------------------------------
consensus_10368#0 CATAACGATCACGGGTAAACGAAAGCGCCTGGGTGGTATCGGTTCAGGTGATGTTGCAAA 180
consensus_10368#2 ------------------------------------------------------------
consensus_10368#1 ------------------------------------------------------------
consensus_10368#0 TGAAGTTGCACGTCGTGTCTACGAAATAATGGAGAAACATAAGGAGAACTTCTTTGTCAT 240
consensus_10368#2 ------------------------------------------------------------
consensus_10368#1 ------------------------------------------------------------
consensus_10368#0 TCGATTACACCCTCAAAATTCTGTCGCTGCACTTCCACCAATTAAGGATCCGGACCCGCT 300
consensus_10368#2 ------------------------------------------------------------
consensus_10368#1 ------------------------------------------------------------
consensus_10368#0 TATTAACTCAGAGCTAATGGAATGTCGTGGTGCTTTCTTAGAAAAAGCTCGTGAAAAGCA 360
consensus_10368#2 ------------------------------------------------------------
consensus_10368#1 ------------------------------------------------------------
consensus_10368#0 CCTAGAATTTTCATCACTACGACGTGCTAAATATTCCACTTTGGTGATGTTATATGAATT 420
consensus_10368#2 ------------------------------------------------------------
consensus_10368#1 ------------------------------------------------------------
consensus_10368#0 ACATAATGAAAATCGTCAACCTCTAATGTACACTTGCAATGTTTGTAGTGCACAACTGGA 480
consensus_10368#2 ------------------------------------------------------------
consensus_10368#1 ------------------------------------------------------------
consensus_10368#0 AACTCCATGGCATTGTAAACAATGTATCGAATATGACTTATGTCCCCGATGCTATGAAAC 540
consensus_10368#2 ------------------------------------------------------------
consensus_10368#1 ------------------------------------------------------------
consensus_10368#0 CGAAAACCATCCTCATCCTATGGTGAAAATAGGTATTGGACTTGACGATTGTAATAAAGG 600
consensus_10368#2 ------------------------------------------------------------
consensus_10368#1 ------------------------------------------------------------
consensus_10368#0 ACAAGAGCCAAGTAACGATTCAACTATTCAGGAATCAGGAAGAGATAAATTGAGTCGTTG 660
consensus_10368#2 ------------------------------------------------------------
consensus_10368#1 ------------------------------------------------------------
consensus_10368#0 GGTAAAAGCCTTAGGCCATAGCTGTTATTGTCGTGATGCAAATTGTCGTGTATATGCATG 720
consensus_10368#2 ------------------------------------------------------------
consensus_10368#1 --------------------------------------------------------AGCC 4
consensus_10368#0 TAAGACAATGAAATATCAGGTGCAACACTTTCGTGTACATTCAACAGATCGAAATCAGTG 780
consensus_10368#2 --------CGATCTCCGCGTCGGATGGCTTTCTTCT----TCCCCGGATTTTCATCGGT- 47
consensus_10368#1 GATGCAGGTGACGTCATTATTCGTGTTCTTGCGGCAGCAGATAAAACTGTTGAAGTTAAA 64
** * *** * *
consensus_10368#0 TTCTGTTTGTCGATTCATCTATTATTTATGTTGCTATCATTCCAAAACTTGCCATGAATT 840
consensus_10368#2 TTCT-TTAGTCTGCACGTTT-TCTTTTGCCTCATCATCATCG------TCACCGCGAGCC 99
consensus_10368#1 TCTGGTATGAAAGCTCGGTTCTGTGATAACGGAGAAATGCCTGAGTCTTTTCCGTACAGA 124
* * * * * * * * * **
consensus_10368#0 GAAATGTCTCGTACCTTTATGTCCTAAACTTAAAGCCAAAATGAAGCAACAGCAAAAGCA 900
consensus_10368#2 --AATGCTTCTTGTTCCTGTTTTCT---TTTAGCATCTTCTTCATCCATTTCCTTAAATA 154
consensus_10368#1 GTGAAAGC-CATTTTCGCATTTCAGGAAATCGACGGTCAGGAAGTATGTTTTTTTGGTCT 183
* * * * * *
consensus_10368#0 ACAACGCCTC-AA-ACAAACACAAATGTT-ACGCAGACGTAT-GGCCACGATGCAGCGCT 956
consensus_10368#2 TTTCTTCCAA-AGTATTTGGCCAAAAGTC-ACCTTCGAA-AT-AGGCAAGTTCAGATGGA 210
consensus_10368#1 TCACGTTCAGGAATATGGATCAGAATGCCCACTTCCTAATACCAGAAGGGTTTATGTGGC 243
* * * ** * ** * * * * *
consensus_10368#0 GTAACAGCATGACTCCTAATCATCAACCAACTCCCCCACCATCTC--AAAATTATCAACA 1014
consensus_10368#2 GAGATCATATGG----GACTCATTAGCATCCTGACAGATATCTTT--GTAATCCACCACA 264
consensus_10368#1 TTATTTAGATTCCGTTTACTTTTTT-CGTCCTAAGCAATTTCGCACAGAGATATATCATG 302
** * * * * ** * ** *
consensus_10368#0 ATGTTCGCAATCTTCGACATCTGATTGCATATCTTC-TCCTATGTCTGTACCTATGCAGT 1073
consensus_10368#2 ATGCGTTCAATGAGTG-CTTTTTTTAGCATTTTTTGATACCATTCTTGTAACCTCTTAGG 323
consensus_10368#1 AACTTTTGGTTGGTTACATTCACTATGCAAAGTTAC---TTGGTTTCACAATGGCTCATA 359
* * * *** * * *
consensus_10368#0 CATCACCATTTGCTTCTACAGCTGTTACTACTGTTTCCTACAACCTACCTATGCCNCATC 1133
consensus_10368#2 TTTAGGAATTTTCTGATCAGGTGGATGCATATGAAAAATGTAATC--------------- 368
consensus_10368#1 TATGGGCTTGTCCGCCTAGCGAAGGTGATGATTACATTTTTCATATGCATCCACCTGATC 419
* * * * * * * * * * *
consensus_10368#0 ACGAAGTCAATCTTCTATC 1152
consensus_10368#2 -------------------
consensus_10368#1 AG----------------- 421
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||