These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10372#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 876 fasta sequence [TACGAGGCCANAATTCGGCACGAGGGCTAAGCAGGGTTTGAGTTTATCTTGAGTTAATCAGCATAAACAGAATGAATTTCAAATGGCACAGTATTACAAGATTGCCTAATATGTTAAATGGCCGATTAATTACTCTACCTAAATATAACATAAAAATGTGTTCTGGATATTCATTTTTTTCGACCCAATCATCGTTTGGTCAGAATAATGTTATAGATGACATACAACTACGATCTACAAACCGAGCATCTACCACAGAAACAGATGATGTTCGCAGAGCTCGTTTATTATATCAAAGTAGAAAGCGTGGGAATTTGGAAAATGGAATTCTGTTAAGTACATTTGCTGCTAAATACCTGAATTCAATGACTCATGAACAACTTATTGCGTATGATAGTTTAATCAACTTACCAGACAATGAATGGGACATTTACTATTGGATTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAAACAGATATATTACAACTT-CTTCAAGAACATTGTCAAAACAATAAAAATG-AACTACGAAATGAACAGCCTAGTTTGTATTAATTATGCTTTTTGCA-AAAAAAAAAGAAACAGTTGAATAGTTCTATTTTGTTTCTGTTTTTTTTCCACTAGAAAATTTCCTCTCTTTTTTTCGTCTTACACTCTCTTAGTTCAGTAATAATGTTTTAATAATCTATAATTATTACCTAGTCCAAATTGGGCCTAGTTCTTTTTATTTTACAGATGTTTGTATGAAATGAATGCACTTCTAACTTCGTTTTCTTTTCTTATGTATATAAGTGTCATTGGATTCTTTCTACATTGCAAAATCAATTTATAATATTTCCTATGGGTTAATGATTACTAATAAAACCTTCTTTAA] [+] EMBL CD082531 [TACGAGGCCANAATTCGGCACGAGGGCTAAGCAGGGTTTGAGTTTATCTTGAGTTAATCAGCATAAACAGAATGAATTTCAAATGGCACAGTATTACAAGATTGCCTAATATGTTAAATGGCCGATTAATTACTCTACCTAAATATAACATAAAAATGTGTTCTGGATATTCATTTTTTTCGACCCAATCATCGTTTGGTCAGAATAATGTTATAGATGACATACAACTACGATCTACAAACCGAGCATCTACCACAGAAACAGATGATGTTCGCAGAGCTCGTTTATTATATCAAAGTAGAAAGCGTGGGAATTTGGAAAATGGAATTCTGTTAAGTACATTTGCTGCTAAATACCTGAATTCAATGACTCATGAACAACTTATTGCGTATGATAGTTTAATCAACTTACCAGACAATGAATGGGACATTTACTATTGGATTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAAACAGATATATTACAACTT CTTCAAGAACATTGTCAAAACAATAAAAATG AACTACGAAATGAACAGCCTAGTTTGTATTAATTATGCTTTTTGCANAAAAAAAAAGAAACAGTTGAATAGTTCTAT ] [+] EMBL CD133164 [ TTGAGTTAATCAGCATAAACAGAATGAATTTCAAATGGCACAGTATTACAAGATTGCCTAATATGTTAAATGGCCGATTAATTACTCTACCTAAATATAACATAAAAATGTGTTCTGGATATTCATTTTTTTCGACCCAATCATCGTTTGGACAAAATAATGTTATAGATGA ] [-] EMBL CD074696 [ GTTCGCAGAGCTCGTTTATTATATCAAAGTAGAAAGCGTGGGAATTTGGAAAATGGAATTCTGTTAAGTACATTTGCTGCTAAATACCTGAATTCAATGACTCATGAACAACTTATTGCGTATGATAGTTTAATCAACTTACCAGACAATGAATGGGACATTTACTATTGGATTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAAACAGATATATTACAACTT CTTCAAGAACATTGTCAAAACAATAAAAATG AACTACGAAATGAACAGCCTAGTTTGTATTAATTAT ] [+] EMBL CD141546 [ CTCGTTTATTATATCAAAGTAGAAAGCGTGGGAATTTGGAAAATGGAATTCTGTTAAGTACATTTGCTGCTAAATACCTGAATTCAATGACTCATGAACAACTTATTGCGTATGATAGTTTAATCAACTTACCAGACAATGAATGGGACATTTACTATTGGATTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAAACAGATATATTACAACTTNCTTC AGAACATTGTCAAAACAAATAAAATGAAACTACG AATGNACAGCCTAGT ] [-] EMBL AI068257 [ AAGTACATTTGCTGCTAAATACCTGAATTCAATGACTCATGAACAACTTATTGCGTATGATAGTTTAATCAACTTACCAGACAATGAATGGGACATTTACTATTGGATTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAAACAGATATATTACAACTT CTTCAAGAACATTGTCAAAACAATAAAAATG AACTACGAAATGAACAGCCTAGTTTGTATTAATTATGCTTTTTGCA AAAAAAAAAGAAACAGTTGAATAGTTCTATTTTGTTTCTGTTTTTTTTCCACTAGAAAATTTCCTCTCTTCTTTTCGTCTTACACTCTCTTAGTTCAGTAATAATGTTTTAATAATCTATAATTATTACCTAGTCCAAATTGGGCCTAGTTCTTTTTATTTTACAGATGTTTGTATGAAATGAATGCACTTCTAACTTCGTTTTCTTTTCTTATGTATATAAGTGTCATTGGATTCTTTCTACATTGCAAAATCAATTTATAATATTTCCTATGGGTTAATGATTACTAATAAAACCTTCTTTAA] [-] EMBL CD076127 [ CTGCTAAATACCTGAATTCAATGACTCATGAACAACTTATTGCGTATGATAGTTTAATCAACTTACCAGACAATGAATGGGACATTTACTATTGGATTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAAACAGATATATTACAACTT CTTCAAGAACATTGTCAAAACAATAAAAATG AACTACGAAATGAACAGCCTAGTTTGTATTAATTAT ] [+] EMBL AA629511 [ GACATTTACTATTGGATTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAAACAGATATATTACAACTT CTTCAAGAACATTGTCAAAACAATAAAAATG AACTACGAAATGAACAGCCTAGTTTGTATTAATTATGCTTTTTGCA AAAAAAAAAGAAACAGTTGAATAGTTCTATTTGGTTTCTGTTTTTTTNCCACTAAAAAATTTCCTCTCTTTTTTNCGTCTTACACTCTCTTAGTTCAGTAATAATGTTTTAATAATCTATAATTATTACCTAGTCCAAATTGGGCCTAGTTCTTTTTATTTTACANATGTTTGTNTGAAATGAATGCACTTCTAACTTCGTNNGCTTTNCTTATGTNTATAANTNTCATTGGATTCTTTCTACATTGCAAAAT ] [-] EMBL AI068126 [ TTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAAACAGATATATTACAACTT CTTCAAGAACATTGTCAAAACAGTAAAAATG AACTACGAAATGAACAGCCTAGTTTGTATTAATTATGCTTTTTGCA AAAAAAAAAGAAACAGTTGAATAGTTCTATTTTGTTTCTGTTTTTTTTCCACTAGAAAATTTCCTCTCTTCTTTTCGTCTTACACTCTCTTAGTTCAGTAATAATGTTTTAATAATCTATAATTATTACCTAGTCCAAATTGGGCCTAGTTCTTTTTATTTTACAGATGTTTGTATGAAATGAATGCACTTCTAACTTCGTTTTCTTTTCTTATGTATATAAGTGTCATTGGATTCTTTCTACATTGCAAAATCAATTTATAATATTTCCTATGGGTTAATGATTACTAATAAAACCTT ] [-] EMBL AI067297 [ CGAAATGAACAGCCTAGTTTGTATTAATTATGCTTTTTGCA AAAAAAAAAGAAACAGTTGAATAGTTCTATTTTGTTTCTGTTTTTTTTCCACTAGAAAATTTCCTCTCTTCTTTTCGTCTTACACTCTCTTAGTTCAGTAATAATGTTTTAATAATCTATAATTATTACCTAGTCCAAATTGGGCCTAGTTCTTTTTATTTTACAGATGTTTGTATGAAATGAATGCACTTCTAACTTCGTTTTCTTTTCTTATGTATATAAGTGTCATTGGATTCTTTCTACATTGCAAAATCAATTTATAATATTTCCTATGGGTTAATGATTACTAATAAAACCTT ] [+] EMBL AA566186 [ TTTTTGCA AAAAAAAAAGAAACAGTTGAATAGTTCTATTTTGTTTCTGTTTTTTTTCCACTAGAAAATNNNCTCTCTTTTTTTCGTCTTACACTCTCTTAGTTCAGTAATAATGTTTTAATAATCTATAATTATTACCTAGTCCAAATTGGGCCTAGTTCTTTTTATTTTACAGATG ] [-] EMBL CD076126 [ TTCTATTTTGTTTCTGTTTTTTTTCCACTAGAAAATTTCCTCTCTTTTTTTCGTCTTACACTCTCTTAGTTCAGTAATAATGTTTTAATAATCTATAATTATTACCTAGTCCAAATTGGGCCTAGTTCTTTTTATTTTACAGATGTTTGTATGAAATGAATGCACTTCTAACTTCGTTTTCTTTTCTTATGTATATAAGTGTCATTGGATTCTTTCTACATTGCAAAATCAATTTATAATATTTCCTATGGGTTAATGATTACTAATAAAACCTTCTT ] [-] EMBL CD074695 [ TTCTATTTTGTTTCTGTTTTTTTTCCACTAGAAAATTTCCTCTCTTTTTTTCGTCTTACACTCTCTTAGTTCAGTAATAATGTTTTAATAATCTATAATTATTACCTAGTCCAAATTGGGCCTAGTTCTTTTTATTTTACAGATGTTTGTATGAAATGAATGCACTTCTAACTTCGTTTTCTTTTCTTATGTATATAAGTGTCATTGGATTCTTTCTACATTGCAAAATCAATTTATAATATTTCCTATGGGTTAATGATTACTAATAAAACCTTCTT ] [-] EMBL AA999521 [ cgTAGTTCAGTAATAATGGTTTAATAATCCATAATTATTACCTAGTCCAAATTGGGCCTAGTTCGTCTTAATTTACAGAAGTTTGTATGAAATGAATGCACTTCTAACTTCGTTTTCTTTTCTTATGTATATAAGTGTCATTGGATTCTTTCTACATTGCAAAATCAATTTATAATATTTCCTATGGGTTAATGATTACTAATAAAACCTTCTT ] consensusID : consensus_10372#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 826 fasta sequence [GGCCAANAATTCGGCACGAGGCCTGAGTTAATCAGCATAAACAGAATGAATTTCAAATGGCACAGTATTACAAGATTGCCTAATATGTTAAATGGCCGATTAATTACTCTACCTAAATATAACATAAAAATGTGTTCTGGATATTCATTTTTTTCGACCCAATCATCGTTTGGTCAGAATAATGTTATAGATGACATACAACTACGATCTACAAACCGAGCATCTACCACAGAAACAGATGATGTTCGCAGAGCTCGTTTATTATATCAAAGTAGAAAGCGTGGGAATTTGGAAAATGGAATTCTGTTAAGTACATTTGCTGCTAAATACCTGAATTCAATGACTCATGAACAACTTATTGCGTATGATAGTTTAATCAACTTACCAGACAATGAATGGGACATTTACTATTGGATTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAACCCCNNNNNNNNCAACTTCTTCAAGAACATTGTCAAAACAATAAAAATGAACTACGAAATGAACAGCCTAGTTTGTATTAATTATGCNTTTTTGCAANAAAAAGAAACAGNTGAATAGTTCTATTTTGTTTCTGTTTTTTTTCCACTAGAAAATTTCCTCTCTTTTTTTCGTCTTACACTCTCTAGTCAGNNATAATGTTTAATATCTATAATTATTACCTAGTCCAAATTGGGGCTAGTCCTTTTATTTTACAGATGGTTGGATGAAATGATGCACCTCTACCTCGTTTTCTTTCTTATGATTAAAGGGGAATGGAATCTTTCTAATTGCAAAACATTTATATAATCCCTAGGGGTAAAGATACACAAAAACCTT] [+] EMBL CD080771 [GGCCAANAATTCGGCACGAGGCCTGAGTTAATCAGCATAAACAGAATGAATTTCAAATGGCACAGTATTACAAGATTGCCTAATATGTTAAATGGCCGATTAATTACTCTACCTAAATATAACATAAAAATGTGTTCTGGATATTCATTTTTTTCGACCCAATCATCGTTTGGTCAGAATAATGTTATAGATGACATACAACTACGATCTACAAACCGAGCATCTACCACAGAAACAGATGATGTTCGCAGAGCTCGTTTATTATATCAAAGTAGAAAGCGTGGGAATTTGGAAAATGGAATTCTGTTAAGTACATTTGCTGCTAAATACCTGAATTCAATGACTCATGAACAACTTATTGCGTATGATAGTTTAATCAACTTACCAGACAATGAATGGGACATTTACTATTGGATTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAACCCCNNNNNNNNCAACTTCTTCAAGAACATTGTCAAAACAATAAAAATGAACTACGAAATGAACAGCCTAGTTTGTATTAATTATGCNTTTTTGCAANAAAAAGAAACAGNTGAATAGTTCTATTTTGTTTCTGTTTTTTTTCCACTAGAAAATTTCCTCTCTTTTTTTCGTCTTACACTCTCTAGTCAGNNATAATGTTTAATATCTATAATTATTACCTAGTCCAAATTGGGGCTAGTCCTTTTATTTTACAGATGGTTGGATGAAATGATGCACCTCTACCTCGTTTTCTTTCTTATGATTAAAGGGGAATGGAATCTTTCTAATTGCAAAACATTTATATAATCCCTAGGGGTAAAGATACACAAAAACCTT] consensusID : consensus_10372#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 311 fasta sequence [AATTGTGATTTATAACCAGTGCTAAGCAGGGTTTGAGTTTATCTTGAGTTAATCAGCATAAACAGAATGAATTTCAAATGGCACAGTATTACAAGATTGCCTAATATGTTAAATGGCCGATTAATTACCCTACCTAAATATAACATAAAAATGTGTTCTGGATATTCATTTTTTTCGACCCAATCATCGTTTGGTCAGAATAATGTTATAGATGACATACAACTACGATCTACAAACCGAGCATCTACCACAGAAACAGATGATGTTCGCAGAGCTCGTTTATTATATNCAAGTAGAAAGCGTGGGAATTT] [+] EMBL CD141394 [AATTGTGATTTATAACCAGTGCTAAGCAGGGTTTGAGTTTATCTTGAGTTAATCAGCATAAACAGAATGAATTTCAAATGGCACAGTATTACAAGATTGCCTAATATGTTAAATGGCCGATTAATTACCCTACCTAAATATAACATAAAAATGTGTTCTGGATATTCATTTTTTTCGACCCAATCATCGTTTGGTCAGAATAATGTTATAGATGACATACAACTACGATCTACAAACCGAGCATCTACCACAGAAACAGATGATGTTCGCAGAGCTCGTTTATTATATNCAAGTAGAAAGCGTGGGAATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10372#0 TACGAGGCCANAATTCGGCACGAGGGCTAAGCAGGGTTTGAGTTTATCTTGAGTTAATCA 60 consensus_10372#2 -----AATTGTGATTTATAACCAGTGCTAAGCAGGGTTTGAGTTTATCTTGAGTTAATCA 55 consensus_10372#1 ------------------------GGCCAANAAT--TCGGCACGAGGCCTGAGTTAATCA 34 ** ** * * * * *********** consensus_10372#0 GCATAAACAGAATGAATTTCAAATGGCACAGTATTACAAGATTGCCTAATATGTTAAATG 120 consensus_10372#2 GCATAAACAGAATGAATTTCAAATGGCACAGTATTACAAGATTGCCTAATATGTTAAATG 115 consensus_10372#1 GCATAAACAGAATGAATTTCAAATGGCACAGTATTACAAGATTGCCTAATATGTTAAATG 94 ************************************************************ consensus_10372#0 GCCGATTAATTACTCTACCTAAATATAACATAAAAATGTGTTCTGGATATTCATTTTTTT 180 consensus_10372#2 GCCGATTAATTACCCTACCTAAATATAACATAAAAATGTGTTCTGGATATTCATTTTTTT 175 consensus_10372#1 GCCGATTAATTACTCTACCTAAATATAACATAAAAATGTGTTCTGGATATTCATTTTTTT 154 ************* ********************************************** consensus_10372#0 CGACCCAATCATCGTTTGGTCAGAATAATGTTATAGATGACATACAACTACGATCTACAA 240 consensus_10372#2 CGACCCAATCATCGTTTGGTCAGAATAATGTTATAGATGACATACAACTACGATCTACAA 235 consensus_10372#1 CGACCCAATCATCGTTTGGTCAGAATAATGTTATAGATGACATACAACTACGATCTACAA 214 ************************************************************ consensus_10372#0 ACCGAGCATCTACCACAGAAACAGATGATGTTCGCAGAGCTCGTTTATTATATCAAAGTA 300 consensus_10372#2 ACCGAGCATCTACCACAGAAACAGATGATGTTCGCAGAGCTCGTTTATTATATNCAAGTA 295 consensus_10372#1 ACCGAGCATCTACCACAGAAACAGATGATGTTCGCAGAGCTCGTTTATTATATCAAAGTA 274 ***************************************************** ***** consensus_10372#0 GAAAGCGTGGGAATTTGGAAAATGGAATTCTGTTAAGTACATTTGCTGCTAAATACCTGA 360 consensus_10372#2 GAAAGCGTGGGAATTT-------------------------------------------- 311 consensus_10372#1 GAAAGCGTGGGAATTTGGAAAATGGAATTCTGTTAAGTACATTTGCTGCTAAATACCTGA 334 **************** consensus_10372#0 ATTCAATGACTCATGAACAACTTATTGCGTATGATAGTTTAATCAACTTACCAGACAATG 420 consensus_10372#2 ------------------------------------------------------------ consensus_10372#1 ATTCAATGACTCATGAACAACTTATTGCGTATGATAGTTTAATCAACTTACCAGACAATG 394 consensus_10372#0 AATGGGACATTTACTATTGGATTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAAACAG 480 consensus_10372#2 ------------------------------------------------------------ consensus_10372#1 AATGGGACATTTACTATTGGATTACAAAGGCAAAAGAAGCCCCGGAATATTTTCAACCCC 454 consensus_10372#0 ATATATTACAACTTCTTCAAGAACATTGTCAAAACAATAAAAATGAACTACGAAATGAAC 540 consensus_10372#2 ------------------------------------------------------------ consensus_10372#1 NNNNNNNNCAACTTCTTCAAGAACATTGTCAAAACAATAAAAATGAACTACGAAATGAAC 514 consensus_10372#0 AGCCTAGTTTGTATTAATTATGCTTTTTGCAAAAAAAAAAGAAACAGTTGAATAGTTCTA 600 consensus_10372#2 ------------------------------------------------------------ consensus_10372#1 AGCCTAGTTTGTATTAATTATGCNTTTTTGCAANAAAAAGAAACAGNTGAATAGTTCTAT 574 consensus_10372#0 TTTTGTTTCTGTTTTTTTTCCACTAGAAAATTTCCTCTCTTTTTTTCGTCTTACACTCTC 660 consensus_10372#2 ------------------------------------------------------------ consensus_10372#1 TTTGTTTCTGTTTTTTTTCCACTAGAAAATTTCCTCTCTTTTTTTCGTCTTACACTCTCT 634 consensus_10372#0 TTAGTTCAGTAATAATGTTTTAATAATCTATAATTATTACCTAGTCCAAATTGGGCCTAG 720 consensus_10372#2 ------------------------------------------------------------ consensus_10372#1 AGTCAGNNATAATGTTTAATATCTATAATTATTACCTAGTCCAAATTGGGGCTAGTCCTT 694 consensus_10372#0 TTCTTTTTATTTTACAGATGTTTGTATGAAATGAATGCACTTCTAACTTCGTTTTCTTTT 780 consensus_10372#2 ------------------------------------------------------------ consensus_10372#1 TTATTTTACAGATGGTTGGATGAAATGATGCACCTCTACCTCGTTTTCTTTCTTATGATT 754 consensus_10372#0 CTTATGTATATAAGTGTCATTGGATTCTTTCTACATTGCAAAATCAATTTATAATATTTC 840 consensus_10372#2 ------------------------------------------------------------ consensus_10372#1 AAAGGGGAATGGAATCTTTCTAATTGCAAAACATTTATATAATCCCTAGGGGTAAAGATA 814 consensus_10372#0 CTATGGGTTAATGATTACTAATAAAACCTTCTTTAA 876 consensus_10372#2 ------------------------------------ consensus_10372#1 CACAAAAACCTT------------------------ 826 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||