These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10377#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 671 fasta sequence [TTGTCCTGGCAACATGAGCATGGGTTAACAATAAACAATTAGATAGATTGATCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA-TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCCCGAATCATCAACTTGTCACCATAGTTTCAACTTCATTGTTGATTATTGGATTAATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATTCTATAGAAGCCAACCTGGATATTTCACCATTCTAAACACCACATAGTAGTGATGTTTA] [+] EMBL CD133102 [TTGTCCTGGCAACATGAGCATGGGTTAACAATATACAATTAGATAGATTGATCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGCTGGTTTCTACCAACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA TGA ] [+] EMBL CD132743 [ CATGGGTTAACAATAAACAATTAGATAGATTGATCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGCTAGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAGTGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGACCCAAACATACCAAATATATATA TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATT ] [+] EMBL CD169127 [ AAACAATTAGATAGATTGATCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTG ] [+] EMBL CD161308 [ AATTAGATAGATTGATCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCCCGAATCATCAACTTGTCACCTTAGTTTCAACTTCATTGTTGATTATTGGATTAATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATTCTATAGAAGCCAACCTGGATATTTCACCATTCTAAACACCACATAGTAGTGATGTTTA] [+] EMBL CD161135 [ AATTAGATAGATTGATCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCCCGAATCATCAACTTGTCACCATAGTTTCAACTTCATTGTTGATTATTGGATTAATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATTCTATAGAAGCCAACCTGGATATTTCA ] [+] EMBL CD161007 [ AATTAGATAGATTGATCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCCCGAATCATCAACTTGTCACCATAGTTTCAACTTCATTGTTGATTATTGGATTAATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATTCTATAGAAGCCAAC ] [-] EMBL BG931965 [ TCATGAGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGAC ] [-] EMBL CD141348 [ AAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATACTCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATGTATA TGATAGAGTCTATGTGTTT ] [-] EMBL CD141560 [ AAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAAGAAGAAGGTATACTCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAAGAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA TGATAGAGTCTATGTGTTTAC ] [-] EMBL AI977478 [ TGTCGTGGTATTCCACAACTAGTACTAGTAACATCAAAATGATCCAGCAAGAATGAGATCACATTGAATAGTCAATAAGAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTCAAAATCAATTTGCAAATAAGTACAATGATGTAATGAAATGATCCAAACATACCAAATATATATA TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCCCGAATCATCAACTTGTCACCATAGTTTCAACTTCATTGTTGATTATTAGATTAATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATTCTATAGAAGCCAACCTGGATATTTCACCATTCTAAACACCACATAGTAG ] [-] EMBL SMAA14102 [ ATATATATATTGATAGAGTCTATGTGTTTACAAAGG TGATCCTGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCC ] [-] EMBL CD200321 [ TATATA TGATAGAGTCTATGTGTTTACAAAGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCCCGAATCATCAACTTGTCACCATAGTTTCAACTTCATTGTTGATTATTAGATTAATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATT ] [-] EMBL AA791335 [ gttcctgtCATTATTGG ATCAAATGATATCACCTTATTATTGCACATTACGCCTTCAATACTTATAATAATGATAATGATGGTGATATAGATGTGATTGTCTGTACTGATCCCGAATCATCAACTTGTCACCATAGTTTCAACTTCATTGTTGATTATTAGATTAATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATTCTATAGAAGCCAACCTGGATATTTCAC ] consensusID : consensus_10377#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 480 fasta sequence [ATACTTTATTGATATAAAAACAACAAAACCAAAAGAATGAGCCATTTTTAAAAAAAAACATTAAATCATTCAAGTAATTGTCATGGCAACATGAGCATGGGTTAACAATAACCAATTGGATAGATTGACCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGGGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAATGATCCAGCAAGATTGAGATCACATTGAATAGCCAATAGGAGGAGGGTATAATCACATTATGGACCATCAAATTTCCATTTTGCCCAGGACCAGGCACTTCAAAATCAATTTGCAAGAGTACAATGTTGTATTGAATGTCCCAACATCCCATTTTATATGGTGGGGCCCATGGTTACAAGGTGATGCCAGGGGGTTCACTGG] [+] EMBL SMAA69899 [ATACTTTATTGATATAAAAACAACAAAACCAAAAGAATGAGCCATTTTTAAAAAAAAACATTAAATCATTCAAGTAATTGTCATGGCAACATGAGCATGGGTTAACAATAACCAATTGGATAGATTGACCAATATACAACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGGGAGAAAGCTGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGGATAAAAGTGTCGTGGTATTCCACAACTAGTACTAGTAACATGAAATGATCCAGCAAGATTGAGATCACATTGAATAGCCAATAGGAGGAGGGTATAATCACATTATGGACCATCAAATTTCCATTTTGCCCAGGACCAGGCACTTCAAAATCAATTTGCAAGAGTACAATGTTGTATTGAATGTCCCAACATCCCATTTTATATGGTGGGGCCCATGGTTACAAGGTGATGCCAGGGGGTTCACTGG] consensusID : consensus_10377#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence [CAGATCCAGCACTCCACANCNATTTNCNAAGAAGNACCAATGATGTAATGGAATGATNCCCNCATACCACANATATATATGATAGAGTCTATGTGTTTACCAANGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAANCAAATGATATCACCGTATTATTGCACATCACGCCTTCAATACTTATAATAATGATAATNGTGGTGATATAGATGTGATTGTCTGTNCTGATCCCGAATCATCAACTTGTCACCATAGTNTCAACTTCATTGTTG] [-] EMBL SM6262 [CAGATCCAGCACTCCACANCNATTTNCNAAGAAGNACCAATGATGTAATGGAATGATNCCCNCATACCACANATATATATGATAGAGTCTATGTGTTTACCAANGGTGATGATCATGAGAGATTCACATAGATACATTATTGGAANCAAATGATATCACCGTATTATTGCACATCACGCCTTCAATACTTATAATAATGATAATNGTGGTGATATAGATGTGATTGTCTGTNCTGATCCCGAATCATCAACTTGTCACCATAGTNTCAACTTCATTGTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10377#0 TTGTCCTGGCAACATGAGCATGGGTTAACAATAAACAATTAGATAGATTGATCAATATAC 60 consensus_10377#2 ------------------------------------------------------------ consensus_10377#1 ------------------------------------------------------------ consensus_10377#0 AACATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGAGAGAAAGC 120 consensus_10377#2 ------------------------------------------------------------ consensus_10377#1 ------------------------------------------------------------ consensus_10377#0 TGGTTTCTACCTACTACAGCAACAAGAAGTTCCAGATAAAAGTGTCGTGGTATTCCACAA 180 consensus_10377#2 ------------------------------------------------------------ consensus_10377#1 ------------------------------------------------------------ consensus_10377#0 CTAGTACTAGTAACATGAAAATGATCCAGCAAGAATGAGATCACATTGAATAGACAATAA 240 consensus_10377#2 ------------------------------------------------------------ consensus_10377#1 ----------------------------------------ATACTTTATTGATATAAAAA 20 consensus_10377#0 GAAGAAGGTATAATCACATATGAACAATCAAATTTCCATTTTGACCAGATCAAGCACTC- 299 consensus_10377#2 ---------------------------------------------CAGATCCAGCACTC- 14 consensus_10377#1 CAACAAAACCAAAAGAATGAGCCATTTTTAAAAAAAAACATTAAATCATTCAAGTAATTG 80 ** ** * * consensus_10377#0 -AAAATCAATTTGCAAAGAAGT-AC-AATGATGTAATGAAATGATC--CAAACATACCAA 354 consensus_10377#2 -CACANCNATTTNCNAAGAAGN-ACCAATGATGTAATGGAATGATN--CCCNCATACCAC 70 consensus_10377#1 TCATGGCAACATGAGCATGGGTTAACAATAACCAATTGGATAGATTGACCAATATACAAC 140 * * * * * * * *** * * ** * *** * **** * consensus_10377#0 ATATATATATGATAGAGTCTATGTGTTTAC-AAAGGTG-ATGATCATGAGAGA---TTCA 409 consensus_10377#2 ANATATATATGATAGAGTCTATGTGTTTACCAANGGTG-ATGATCATGAGAGA---TTCA 126 consensus_10377#1 ATGAATATCAAGTTTAACTAATCAGTTTGTATACAATTTGAGATCATGGGAGAAAGCTGG 200 * **** * * ** **** * * ******* **** * consensus_10377#0 CATAGATACATTATTGGAATCAAATGAT-----ATCACCTTATTATTGCACATTACGCCT 464 consensus_10377#2 CATAGATACATTATTGGAANCAAATGAT-----ATCACCGTATTATTGCACATCACGCCT 181 consensus_10377#1 TTTCTACCTACTACAGCAACAAGAAGTTCCAGGATAAAAGTGTCGTGGTATTCCACAACT 260 * * * ** * ** * * * * ** * * * * * * ** ** consensus_10377#0 TCAATACTTATAATA----ATGAT--AATGATGGTGATAT-AGATGTGATTGTCTGTACT 517 consensus_10377#2 TCAATACTTATAATA----ATGAT--AATNGTGGTGATAT-AGATGTGATTGTCTGTNCT 234 consensus_10377#1 --AGTACTAGTAACATGAAATGATCCAGCAAGATTGAGATCACATTGAATAGCCAATAGG 318 * **** *** * ***** * *** ** * ** ** * * * consensus_10377#0 GATCCCGAATCATCAACTTGTC-ACCAT--AGTTTCAACTTCATTGTTGATTATTGGATT 574 consensus_10377#2 GATCCCGAATCATCAACTTGTC-ACCAT--AGTNTCAACTTCATTGTTG----------- 280 consensus_10377#1 AGGAGGGTATAATCACATTATGGACCATCAAATTTCCATTTTGCCCAGGACCAGGCACTT 378 * ** **** ** * ***** * * ** * ** * consensus_10377#0 AATCCCTTCTTTTCATTCATCATTCACAGTTTATCCATTCTATAGAAGCCAACCTGGATA 634 consensus_10377#2 ------------------------------------------------------------ consensus_10377#1 CAAAATCAATTTGCAAGAGTACAATGTTGTATTGAATGTCCCAACATCCCATTTTATATG 438 consensus_10377#0 TTTCACCATTCTAAACACCACATAGTAGTGATGTTTA----- 671 consensus_10377#2 ------------------------------------------ consensus_10377#1 GTGGGGCCCATGGTTACAAGGTGATGCCAGGGGGTTCACTGG 480 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||