cluster # 1038

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Schistosoma mansoni
cluster # 1038 cluster # 1038 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1038#0 length = 458 sequences # 1

consensus_1038#1 length = 413 sequences # 1

consensusID : consensus_1038#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 458
fasta sequence

                              [AAAAACCAGATTATTTTAACACAAGTTGACACACCAGGAATTTAAATTTTTACTTTTCAGTGTATCACAACCGTATTATTGTTTTACTATTGGCTTGCTACCCAATGCTAACTTTATTTAGAAATTCTCAAGTCAAACCTCAGTATTGATAAATATCAGTTAGGTTTAGTTTTGTAACCGACTAACTGGTCATTAGACGGAACCTTGATTATTTTAATGTAAATCGGCACGTTTGTATAAAAAGTCATCAAACTAATAATAATAATAATAATCACTATGTGACCAATCAATTGTTTAATGTTCACAAAATAACTAGTGGTTAAGCGCTCGGGCGCGAGACTGGTAGGTCCTGGGTTCGAATCTCGCGAGGCGGGATCGTGGATGCGCACTGCTAAGGAGTCCCACCATAGGACGAAACGGCCGTCAAGCAGTGCTTCCAGGTTTTCCATGGTGGTCTA]

[+] EMBL CD194996             [AAAAACCAGATTATTTTAACACAAGTTGACACACCAGGAATTTAAATTTTTACTTTTCAGTGTATCACAACCGTATTATTGTTTTACTATTGGCTTGCTACCCAATGCTAACTTTATTTAGAAATTCTCAAGTCAAACCTCAGTATTGATAAATATCAGTTAGGTTTAGTTTTGTAACCGACTAACTGGTCATTAGACGGAACCTTGATTATTTTAATGTAAATCGGCACGTTTGTATAAAAAGTCATCAAACTAATAATAATAATAATAATCACTATGTGACCAATCAATTGTTTAATGTTCACAAAATAACTAGTGGTTAAGCGCTCGGGCGCGAGACTGGTAGGTCCTGGGTTCGAATCTCGCGAGGCGGGATCGTGGATGCGCACTGCTAAGGAGTCCCACCATAGGACGAAACGGCCGTCAAGCAGTGCTTCCAGGTTTTCCATGGTGGTCTA]




>consensus_1038#0
AAAAACCAGATTATTTTAACACAAGTTGACACACCAGGAATTTAAATTTTTACTTTTCAG
TGTATCACAACCGTATTATTGTTTTACTATTGGCTTGCTACCCAATGCTAACTTTATTTA
GAAATTCTCAAGTCAAACCTCAGTATTGATAAATATCAGTTAGGTTTAGTTTTGTAACCG
ACTAACTGGTCATTAGACGGAACCTTGATTATTTTAATGTAAATCGGCACGTTTGTATAA
AAAGTCATCAAACTAATAATAATAATAATAATCACTATGTGACCAATCAATTGTTTAATG
TTCACAAAATAACTAGTGGTTAAGCGCTCGGGCGCGAGACTGGTAGGTCCTGGGTTCGAA
TCTCGCGAGGCGGGATCGTGGATGCGCACTGCTAAGGAGTCCCACCATAGGACGAAACGG
CCGTCAAGCAGTGCTTCCAGGTTTTCCATGGTGGTCTA

consensusID : consensus_1038#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 413
fasta sequence

                              [AGTGCTATGGCGCGAGGCTGATAGGTCCTGGGTTCGAATCTCGCGAGTGCGGGATCGTGGATGCGCACTGCTGAGGAGTCCCATAATAAGACGAAACGGCCGTCCAGTGCTTCCAGGTTTTCCATGGTGGTCTAGCTTCAATTGACTCATGATTTCAACTATGAAAATTGGATAACTGATGTGACAGAATCAACGCTCAAAAGAAATCCCCACAGTACAATATAAGGTTGAGAAGTACTGAACTAAGGTAAAATAGAATTTCCAAGATTTGTTATTTATGAAGCAAACTACCTTAACACTAATCATACTATCGTCTAAAGCCATGATCTTTGGTAGGATAATCTGTGCTTATAACGTAAATGACTATTAGCGTTTATAGCTTCTCACTAAAAACGATTCATGATTCTTACTTT]

[-] EMBL CD186458             [AGTGCTATGGCGCGAGGCTGATAGGTCCTGGGTTCGAATCTCGCGAGTGCGGGATCGTGGATGCGCACTGCTGAGGAGTCCCATAATAAGACGAAACGGCCGTCCAGTGCTTCCAGGTTTTCCATGGTGGTCTAGCTTCAATTGACTCATGATTTCAACTATGAAAATTGGATAACTGATGTGACAGAATCAACGCTCAAAAGAAATCCCCACAGTACAATATAAGGTTGAGAAGTACTGAACTAAGGTAAAATAGAATTTCCAAGATTTGTTATTTATGAAGCAAACTACCTTAACACTAATCATACTATCGTCTAAAGCCATGATCTTTGGTAGGATAATCTGTGCTTATAACGTAAATGACTATTAGCGTTTATAGCTTCTCACTAAAAACGATTCATGATTCTTACTTT]




>consensus_1038#1
AGTGCTATGGCGCGAGGCTGATAGGTCCTGGGTTCGAATCTCGCGAGTGCGGGATCGTGG
ATGCGCACTGCTGAGGAGTCCCATAATAAGACGAAACGGCCGTCCAGTGCTTCCAGGTTT
TCCATGGTGGTCTAGCTTCAATTGACTCATGATTTCAACTATGAAAATTGGATAACTGAT
GTGACAGAATCAACGCTCAAAAGAAATCCCCACAGTACAATATAAGGTTGAGAAGTACTG
AACTAAGGTAAAATAGAATTTCCAAGATTTGTTATTTATGAAGCAAACTACCTTAACACT
AATCATACTATCGTCTAAAGCCATGATCTTTGGTAGGATAATCTGTGCTTATAACGTAAA
TGACTATTAGCGTTTATAGCTTCTCACTAAAAACGATTCATGATTCTTACTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1038#0      AAAAACCAGATTATTTTAACACAAG-TTGACACACCAGGAATTTAAATTTTTACTTTTCA 59
consensus_1038#1      ---------AGTGCTATGGCGCGAGGCTGATAGGTCCTGGGTTCGAATCTCGCGAGTGCG 51
                               * *  * *  * * **  *** *   *  *  **  *** *      * * 

consensus_1038#0      GTGTATCACAACCGTATTATTGTTTTACTATTGGCTTGCTACCCAATGCTAACTT--TAT 117
consensus_1038#1      GGATCGTGGATGCGCACTGCTGAGG-AGTCCCATAATAAGACGAAACGGCCGTCCAGTGC 110
                      *  *     *  ** * *  **    * *       *   **  ** *         *  

consensus_1038#0      TTAGAAATTCTCAAGTCAAACCTCAGTATTGATAAATATCAGTTAGGTTTAGTTTTGTAA 177
consensus_1038#1      TTCCAGGTTTTCCA-TGGTGGTCTAGCTTCAATTGAC-TCA--TGATTTCAACTATGAAA 166
                      **  *  ** ** * *        **  *  **  *  ***  *   ** *  * ** **

consensus_1038#0      -CCGACTAACTGGTCATTAGACGGAACCTTGATTATTTTAATGTAAATCGGCACGTTTGT 236
consensus_1038#1      ATTGGATAACTG---ATGTGACAGAATC---AACGCTCAAAAG-AAATCCCCACAGTACA 219
                         *  ******   **  *** *** *   *    *  ** * *****  ***  *   

consensus_1038#0      ATAAAAAGTCATCAAACTAATAATAATAATAATAATCACTATGTGACCAATCAATTGTTT 296
consensus_1038#1      ATATAAGGTTGAGAAGTACTGAACTAAGGTAAAATAGAATTTCCAA--GATTTGTTATTT 277
                      *** ** **    **      **  *   *** *   * * *   *   **   ** ***

consensus_1038#0      AATGTTCACAAAATAACTAGTGGTTAAGCGCTCGGGCGCGAGACTGGTAGGTCCTGGGTT 356
consensus_1038#1      ATGAA--GCAAACTACCTTAACACTAATCATACTATCGTCTAAA-GCCATGATCTTTGGT 334
                      *       **** ** **      *** *   *   **    *  *  * *  **  * *

consensus_1038#0      CGAATCTCGCGAGGCGGGATCGTGGATGCGCACTGCTAAGGAGTCCCACCATAGGACGAA 416
consensus_1038#1      AGGATAATCTGTGCTTATAACGTAAATG---ACTATTA-GCGTTTATAGCTTCTCACTAA 390
                       * **     * *     * ***  ***   ***  ** *   *   * * *   ** **

consensus_1038#0      ACGGCCGTCAAGCAGTGCTTCCAGGTTTTCCATGGTGGTCTA 458
consensus_1038#1      AAA-----CGATTCATGATTCTTACTTT-------------- 413
                      *       * *    ** ***    ***