These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1038#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence [AAAAACCAGATTATTTTAACACAAGTTGACACACCAGGAATTTAAATTTTTACTTTTCAGTGTATCACAACCGTATTATTGTTTTACTATTGGCTTGCTACCCAATGCTAACTTTATTTAGAAATTCTCAAGTCAAACCTCAGTATTGATAAATATCAGTTAGGTTTAGTTTTGTAACCGACTAACTGGTCATTAGACGGAACCTTGATTATTTTAATGTAAATCGGCACGTTTGTATAAAAAGTCATCAAACTAATAATAATAATAATAATCACTATGTGACCAATCAATTGTTTAATGTTCACAAAATAACTAGTGGTTAAGCGCTCGGGCGCGAGACTGGTAGGTCCTGGGTTCGAATCTCGCGAGGCGGGATCGTGGATGCGCACTGCTAAGGAGTCCCACCATAGGACGAAACGGCCGTCAAGCAGTGCTTCCAGGTTTTCCATGGTGGTCTA] [+] EMBL CD194996 [AAAAACCAGATTATTTTAACACAAGTTGACACACCAGGAATTTAAATTTTTACTTTTCAGTGTATCACAACCGTATTATTGTTTTACTATTGGCTTGCTACCCAATGCTAACTTTATTTAGAAATTCTCAAGTCAAACCTCAGTATTGATAAATATCAGTTAGGTTTAGTTTTGTAACCGACTAACTGGTCATTAGACGGAACCTTGATTATTTTAATGTAAATCGGCACGTTTGTATAAAAAGTCATCAAACTAATAATAATAATAATAATCACTATGTGACCAATCAATTGTTTAATGTTCACAAAATAACTAGTGGTTAAGCGCTCGGGCGCGAGACTGGTAGGTCCTGGGTTCGAATCTCGCGAGGCGGGATCGTGGATGCGCACTGCTAAGGAGTCCCACCATAGGACGAAACGGCCGTCAAGCAGTGCTTCCAGGTTTTCCATGGTGGTCTA] consensusID : consensus_1038#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 413 fasta sequence [AGTGCTATGGCGCGAGGCTGATAGGTCCTGGGTTCGAATCTCGCGAGTGCGGGATCGTGGATGCGCACTGCTGAGGAGTCCCATAATAAGACGAAACGGCCGTCCAGTGCTTCCAGGTTTTCCATGGTGGTCTAGCTTCAATTGACTCATGATTTCAACTATGAAAATTGGATAACTGATGTGACAGAATCAACGCTCAAAAGAAATCCCCACAGTACAATATAAGGTTGAGAAGTACTGAACTAAGGTAAAATAGAATTTCCAAGATTTGTTATTTATGAAGCAAACTACCTTAACACTAATCATACTATCGTCTAAAGCCATGATCTTTGGTAGGATAATCTGTGCTTATAACGTAAATGACTATTAGCGTTTATAGCTTCTCACTAAAAACGATTCATGATTCTTACTTT] [-] EMBL CD186458 [AGTGCTATGGCGCGAGGCTGATAGGTCCTGGGTTCGAATCTCGCGAGTGCGGGATCGTGGATGCGCACTGCTGAGGAGTCCCATAATAAGACGAAACGGCCGTCCAGTGCTTCCAGGTTTTCCATGGTGGTCTAGCTTCAATTGACTCATGATTTCAACTATGAAAATTGGATAACTGATGTGACAGAATCAACGCTCAAAAGAAATCCCCACAGTACAATATAAGGTTGAGAAGTACTGAACTAAGGTAAAATAGAATTTCCAAGATTTGTTATTTATGAAGCAAACTACCTTAACACTAATCATACTATCGTCTAAAGCCATGATCTTTGGTAGGATAATCTGTGCTTATAACGTAAATGACTATTAGCGTTTATAGCTTCTCACTAAAAACGATTCATGATTCTTACTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1038#0 AAAAACCAGATTATTTTAACACAAG-TTGACACACCAGGAATTTAAATTTTTACTTTTCA 59 consensus_1038#1 ---------AGTGCTATGGCGCGAGGCTGATAGGTCCTGGGTTCGAATCTCGCGAGTGCG 51 * * * * * * ** *** * * * ** *** * * * consensus_1038#0 GTGTATCACAACCGTATTATTGTTTTACTATTGGCTTGCTACCCAATGCTAACTT--TAT 117 consensus_1038#1 GGATCGTGGATGCGCACTGCTGAGG-AGTCCCATAATAAGACGAAACGGCCGTCCAGTGC 110 * * * ** * * ** * * * ** ** * * consensus_1038#0 TTAGAAATTCTCAAGTCAAACCTCAGTATTGATAAATATCAGTTAGGTTTAGTTTTGTAA 177 consensus_1038#1 TTCCAGGTTTTCCA-TGGTGGTCTAGCTTCAATTGAC-TCA--TGATTTCAACTATGAAA 166 ** * ** ** * * ** * ** * *** * ** * * ** ** consensus_1038#0 -CCGACTAACTGGTCATTAGACGGAACCTTGATTATTTTAATGTAAATCGGCACGTTTGT 236 consensus_1038#1 ATTGGATAACTG---ATGTGACAGAATC---AACGCTCAAAAG-AAATCCCCACAGTACA 219 * ****** ** *** *** * * * ** * ***** *** * consensus_1038#0 ATAAAAAGTCATCAAACTAATAATAATAATAATAATCACTATGTGACCAATCAATTGTTT 296 consensus_1038#1 ATATAAGGTTGAGAAGTACTGAACTAAGGTAAAATAGAATTTCCAA--GATTTGTTATTT 277 *** ** ** ** ** * *** * * * * * ** ** *** consensus_1038#0 AATGTTCACAAAATAACTAGTGGTTAAGCGCTCGGGCGCGAGACTGGTAGGTCCTGGGTT 356 consensus_1038#1 ATGAA--GCAAACTACCTTAACACTAATCATACTATCGTCTAAA-GCCATGATCTTTGGT 334 * **** ** ** *** * * ** * * * * ** * * consensus_1038#0 CGAATCTCGCGAGGCGGGATCGTGGATGCGCACTGCTAAGGAGTCCCACCATAGGACGAA 416 consensus_1038#1 AGGATAATCTGTGCTTATAACGTAAATG---ACTATTA-GCGTTTATAGCTTCTCACTAA 390 * ** * * * *** *** *** ** * * * * * ** ** consensus_1038#0 ACGGCCGTCAAGCAGTGCTTCCAGGTTTTCCATGGTGGTCTA 458 consensus_1038#1 AAA-----CGATTCATGATTCTTACTTT-------------- 413 * * * ** *** *** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||