These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10401#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 683 fasta sequence [TTGCAAAAAAGAGTATTCAATCATGAATAGGTTCTTTTGGACTGTCACACAATGTACAATTTTGCTAGTTATTATATGTAATTTGAATACAATGAAAGCTACTTCAGCAAATAGTCGTACACATGGAGCAACTTCTACTCGTACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCACTGAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCACTGAACCTACAGTAACTAC---CAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTG-CTAAACCTGCAGCATCTACTCCTAAGAAACCACATGATGAACGTGCTGTGCTGGCTGCGGCGGCTGTCCCTATCGTACTTGGAGTTATTGGGGAAGTGATTGGTTTTATACTACAATACATAGCTAGCTAAGCCTCAGGCTTTTCTCAATACCTAAATTGCTGAGTATTGCTTCTCAAAAGGAGAGTATTATTACAAAAGTTAACTGAAATATAAAAATTACCATTGAAAGTAAAAAAAACATGTTTAACTTTCTCATCTAAAAACTAACGTTTTGTTTGTTGTCAAATAAATTTATTCTGACTGGAAAAAAAAAAAAAAAAAA] [-] EMBL CD178404 [TTGCAAAAAAGAGTATTCAATCATGAATAGGTTCTTTTGGACTGTCACACAATGTACAATTTTGCTAGTTATTATATGTAATTTGAATACAATGAAAGCTACTTCAGCAAATAGTCGTACACATGGAGCAACTTCTACTCGTACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCACTGAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCACTGAACCTACAGTAACTAC CAAACCTTCca ] [+] EMBL CD083405 [ AGTATTCAATCATGAATAGGTTCTTTTGGACTGTCACACAATGTACAATTTTGCTAGTTATTATATGTAATTTGAATACAATGAAAGCTACTTCAGCAAATAGTCGTACACATGGAGCAACTTCTACTCGTACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCACTGAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCACTGAACCTACAGTAACTAC CAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTG CTAAACCTGCAGCATCTACTCCTAAGAAACCACATGATGAACGTGCTGTGCTGGCTGCGGCGGCTGTCCCTATCGTACTTGGAGTTATTGGGGAAGTGATTGGTTTTATACTACGATACATAGCTAGCTAAGCCTCAGGCTTTTCTCAATACCTAAATTGCTGAGTATTGCTTCTCAAAAGGAGAGTATTA ] [+] EMBL AF521094 [ ATCATGAATAGGTTCTTTTGGACTGTCACACAATGTACAATTTTGCTAGTTATTATATGTAATTTGAATACAATGAAAGCTACTTCAGCAAATAGTCGTACACATGGAGCAACTTCTACTAGTACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACCAGCAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTG CTAAACCTGCAGCATCTACTCCTAAGAAACCACATGATGAACGTGCTGTGCTGGCTGCGGCGGCTGTCCCTATCGTACTTGGAGTTATTGGGGAAGTGATTGGTTTTATACTACAATACAT ] [+] EMBL CD186371 [ ATGAATAGGTTCTTTTGGACTGTCACACAATGTACAATTTTGCTAGTTATTATATGTAATTTGAATACAATGAAAGCTACTTCAGCAAATAGTCGTACACATGGAGCAACTTCTACTCGTACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCACTGAACCTACAGTAACTACTCCTAAAGCAGCA ] [+] EMBL CD186339 [ ATGAATAGGTTCTTTTGGACTGTCACACAATGTACAATTTTGCTAGTTATTATATGTAATTTGAATACAATGAAAGCTACTTCAGCAAATAGTCGTACACATGGAGCAACTTCTACTCGTACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCACTGAACCTACAGTAACTACTCCTAAAGCAGCA ] [-] EMBL CD182887 [ AGTCGTACACATGGAGCAACTTCTACTCGTACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCACTGAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTTTACCACTGAACCTACAGTAACTACCAGCAAACCTTCACCT ] [-] EMBL CD182902 [ AAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTTTACCCCTGAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTTTACCCCTGAACCTACAGTAACTAC CAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTG CTAAACCTGCAGCATCTACTCCTAAGAAACCACATGATGAACGTGCT ] [-] EMBL CD179668 [ AACTTTTACCATTAGACCTACAGTAACTACTCNTAAAGCAGCAGCGACTTCTACCATTAAACCTACAGTAACTAC CAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTGNCTAAACCTGCAGCATCTACTCCTAAGAAACCACATGATGAACGTGCTGTGCTGGCTGCGGCGGCTGTCCCTATCGTACTTGGAGTTATTGGGGAAGTGATTGGTTTTATACTACAATACGTAGC ] [-] EMBL AI395567 [ tACTAC CAAACCTTCACTTGCTAAACCTGCAGCATCTAATACTG CTAAACCTGCAGCATCTACTCNTAAGAAACCACATGATGAACGTGCTGTGCTGGCTGCGGCGGCTGTCCCTATCGTACTTGGAGTTATTGGGGAAGTGATTGGTTTTATACTACAATACATAGCTAGCTAAGCCTCAGGCTTTTCTCAATACCTAAATTGCTGAGTATTGCTTCTCAAAAGGAGAGTATTATTACAAAAGTTAACTGAAATATAAAAATTACCATTGAAAGTAAAAAAAACATGTTTAACTTTCTCATCTAAAAACTAACGTTTTGTTTGTTGTCAAATAAATTTATTCTGACTGGAAAAAAAAAAAAAAAAAA] [-] EMBL AA999406 [ GCTTCTAATACTG CTAAACCTGCAGCATCTATTCCTAAGAAACCACATGATGAACGTGTTGTGCTGGCTGCGGCGGCTGTCCCTATCGTACTTGGAGTTATTGGGGAAGGGATTGGTTTTATACTACAATACATAGCTGGGTAAGCCTAAGGTTTTTCTCAATTCCTAAATTGCTGAGTATTGCTTCTCAAAAGGAGGGTTTTATTACAAAAGTTAACTGAAATATAAAAATTACCATTGAAGGTAAAAAAAACGGGTTTAAGTTTTTCATCTAAAAAATAACGTTTTGTTTGTTGTCAAAGAAATTTA ] consensusID : consensus_10401#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 339 fasta sequence [ATGAATAGGTTCTTTTGGACTGTCACACAATGTACAATTTTGCTAGTTATTATATGTAATTTGAATACAATGAAAGCTACTTCAGCAAATAGTCGTACACATGGAGCAACTTCTACTAGTACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTAC---CAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTGCTAAACCTGCAGCATCTACTCCTAAGAAACCACATGATGAACGTGCT] [+] EMBL BE505109 [ATGAATAGGTTCTTTTGGACTGTCACACAATGTACAATTTTGCTAGTTATTATATGTAATTTGAATACAATGAAAGCTACTTCAGCAAATAGTCGTACACATGGAGCAACTTCTAC TACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCAACTTCTACCATT AACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCACTGAACCTACAGTAACTAC CAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTGCTAAACCTGCAG ] [-] EMBL CD182758 [ AATAGTCGTACACATGGAGCAACTTCTACTAGTACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAATAACTACTCCT ] [-] EMBL CD182811 [ AGTCGTACACATGGAGCAACTTCTACTAGTACACATGGAGCAACTTCTTCTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCAACTTCTTCCATTAAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTTCCATTAAACCTACAGTGACTACCAGCAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTGCTAAACCTGCAGCATCTACTCCTAAGAAACCACATGATGAACGTGCT] [+] EMBL CD182785 [ TGGAGCAACTTCTACTGCTAAACCTGCAGCATCTACTCCTCCTAAAGCAGCAGCACCTTCTACCATTAAACCTACAGTACCTACTCCTAAAGCAGCAGCACCTTCAACCATTAAACCTACAGTACCTACCAGCAAACCTTCACCTGCTAAACCTGCAGCATCTAATAC ] [-] EMBL CD182773 [ AAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTAC CAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTGCTAAACCTGCAGCATCTACTCCTAAGAAACCACATGATGAACGTGCT] [-] EMBL CD183852 [ AGTATTTACTCCTAAAGCAGCAGAAAATTAAACCATTGAACCTACAGTAACTAC CAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTGCTAAACCTGCAGCATCTACTCCTAAGAAACCACATGATGAAC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10401#0 TTGCAAAAAAGAGTATTCAATCATGAATAGGTTCTTTTGGACTGTCACACAATGTACAAT 60 consensus_10401#1 ----------------------ATGAATAGGTTCTTTTGGACTGTCACACAATGTACAAT 38 ************************************** consensus_10401#0 TTTGCTAGTTATTATATGTAATTTGAATACAATGAAAGCTACTTCAGCAAATAGTCGTAC 120 consensus_10401#1 TTTGCTAGTTATTATATGTAATTTGAATACAATGAAAGCTACTTCAGCAAATAGTCGTAC 98 ************************************************************ consensus_10401#0 ACATGGAGCAACTTCTACTCGTACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATC 180 consensus_10401#1 ACATGGAGCAACTTCTACTAGTACACATGGAGCAACTTCTACTGCTAAACCTGCAGCATC 158 ******************* **************************************** consensus_10401#0 TACTCCTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACTCCTAAAGC 240 consensus_10401#1 TACTCCTCCTAAAGCAGCAGCAACTTCTACCATTAAACCTACAGTAACTACTCCTAAAGC 218 ************************************************************ consensus_10401#0 AGCAGCAACTTCTACCACTGAACCTACAGTAACTACTCCTAAAGCAGCAGCAACTTCTAC 300 consensus_10401#1 AGCAGCAACTTCTACCATTAAACCTACAGTAACTAC------------------------ 254 ***************** * **************** consensus_10401#0 CACTGAACCTACAGTAACTACCAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTGC 360 consensus_10401#1 ---------------------CAAACCTTCACCTGCTAAACCTGCAGCATCTAATACTGC 293 *************************************** consensus_10401#0 TAAACCTGCAGCATCTACTCCTAAGAAACCACATGATGAACGTGCTGTGCTGGCTGCGGC 420 consensus_10401#1 TAAACCTGCAGCATCTACTCCTAAGAAACCACATGATGAACGTGCT-------------- 339 ********************************************** consensus_10401#0 GGCTGTCCCTATCGTACTTGGAGTTATTGGGGAAGTGATTGGTTTTATACTACAATACAT 480 consensus_10401#1 ------------------------------------------------------------ consensus_10401#0 AGCTAGCTAAGCCTCAGGCTTTTCTCAATACCTAAATTGCTGAGTATTGCTTCTCAAAAG 540 consensus_10401#1 ------------------------------------------------------------ consensus_10401#0 GAGAGTATTATTACAAAAGTTAACTGAAATATAAAAATTACCATTGAAAGTAAAAAAAAC 600 consensus_10401#1 ------------------------------------------------------------ consensus_10401#0 ATGTTTAACTTTCTCATCTAAAAACTAACGTTTTGTTTGTTGTCAAATAAATTTATTCTG 660 consensus_10401#1 ------------------------------------------------------------ consensus_10401#0 ACTGGAAAAAAAAAAAAAAAAAA 683 consensus_10401#1 ----------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||