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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10445#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 846 fasta sequence
[GCCCATTCAGAAACTATTAAATTACATCAAGAAGCAGAAGCACATATTTGTCAATTAGAAATAGATATAACAGAACTAAATAATTTGGTATCTGAAACTGCAACCACTTTACAGATATGCGAAAGTCGTCGATCTGCTTTATCAAACGAAGTAGAAAGCTTAAGAAGTCAATTGGAAATCACAGAAAGATTAAAACGAAAGTTGGAAGAAGAGTCATCGGAGAATATGACAAAATTTGGTGGTTTGACAATACAAGTGAATAATTTGACAGCAGAAAAGAGAAAACTTGAAGGTCAGATAGCTGTGCTTGAAGGTGATTTGGACGATGCGACAGGTGCAAAAGATGTTGCTACAGAGAGAGCAGACAGACTTCAAAACGAAGTTAACCGTCTAGCTCAAGAACTTCAAACTGAACAGGAGTCGTCACGTCGAGCAGATACTGCAAG-AAGGCAATTGGAAGCTGAACTGAAAG-ACTGTAATGCTAAGATTTTGGAAAGCCGAAGAGCAGCTGATGCAGCAGAACGTGAAGCTGATGATG-CCAAAAGTCAAGCCGAGACTAAAATACGAGAATTGCAGCTAGC-TTTAGAAGAGGGATCTAGAAAGTCAAGAGAGGCCCAAACTCAACTAAGAAAATGTGAGAGAGCACTCAAAGAATCAGTACAAGCTGAACAAGATGCTGGACATATGATAAATGAACTACGTGAAGTGGTTGAACGAGCTCAAACAAAACTGAAACAAACCAGGAAACAGTTAGAAGAAGCAGAANATGCTGCTCAAACTGCTTCAATGAAATATCGTANAGCTCAACAACAAGTGGATGATGCAGATTTACGTGNCTCAATGGCT]
[+] EMBL CD188342 [GCCCATTCAGAAACTATTAAATTACATCAAGAAGCAGAAGCACATATTTGTCAATTAGAAATAGATATAACAGAACTAAATAATTTGGTATCTGAAACTGCAACCACTTTACAGATATGCGAAAGTCGTCGATCTGCTTTATCAAACGAAGTAGAAAGCTTAAGAAGTCAATTGGAAATCACAGAAAGATTAAAACGAAAGTTGGAAGAAGAGTCATCGGAGAATATGACAAAATTTGGTGGTTTGACAATACAAGTGAATAATTTGACAGCAGAAAAGAGAAAACTTGAAGGTCAGATAGCTGTGCTTGAAGGTGATTTGGACGATGCGACAGGTGCA ]
[-] EMBL CD064254 [ AGAAACTATTAAATTACATCAAGAAGCAGAAGCACATATTTGTCAATTAGAAATAGATATAACAGAACTAAATAATTTGGTATCTGAAACTGCAACCACTTTACAGATATGCGAAAGTCGTCGATCTGCTTTATCAAACGAAGTAGAAAGCTTAAGAAGTCAATTGGAAATCACAGAAAGATTAAAACGAAAGTTGGAAGAAGAGTCATCGGAGAATATGACAAAATTTGGTGGTTTGACAATACAAGTGAATAATTTGACAGCAGAAAAGAGAAAACTTGAAGGTCAGATAGCTGTGCTTGAAGGTGATTTGGACGATGCGACAGGTGCAAAAGATGTTGCTACAGAGAGAGCAGACAGACTTC AAACGAAGTTAACCGTCTAGCTCAAGAACTTCAAACTGAACAGGAGTCGTCACGTCGAGCAGATACTGCAAG AAGGC ATTGGAAGCTGAACTGAAAG ACTGTAATGCgtgat ]
[+] EMBL CD132871 [ TAAATTACATCAAGAAGCAGAAGCACATATTTGTCAATTAGAAATAGATATAACAGAACTAAATAATTTGGTATCTGAAACTGCAACCACTTTACAGATATGCGAAAGTCGTCGATCTGCTTTATCAAACGAAGTAGAAAGCTTAAGAAGTCAATTGGAAATCACAGAAAGATTAAAACGAAAGTTGGAAGAAGAGTCATCGGAGAATATGACAAAATTTGGTGGTTTGACAATACAAGTGAATAATTTGACAGCAGAAAAGAGAAAACTTGAAGGTCAGATAGCTGTGCTTGAAGGTGATTTGGACGATGCGACAGGTGCAAAAGATGTTGCTACAGAGAGAGCAGACAGACTTCAAAACGAAGTTAACCGTCTAGCTCAAGAACTTCAAACTGATCAGGAGTCGTCACGTCGAGCAGATACTGCAAG AAGGCAATTGGAAGCTGAACTGANAG ACTGTAATGCTAAGATTTTGGAAAGCCGAAGAGCAGCTGATGCAGCAGAACGTGAAGCTGATGATG CCAAAAGT ]
[-] EMBL CD139486 [ ttnTGGTATCTGAAACTGCAACCACTTTACAGATATGCGAAAGTCGTCGATCTGCTTTATCAAACGAAGTAGAAAGCTTAAGAAGTCAATTGGAAATCACAGAAAGATTAAAACGAAAGTTGGAAGAAGAGTCATCGGAGAATATGACAAAATTTGGTGGTTTGACAATACAAGTGAATAATTTGACAGCAGAAAAGAGAAAACTTGAAGGTCAGATAGCTGTGCTTGAAGGTGATTTGGACGATGCGACAGGTGCAAAAGATGTTGCTACAGAGAGAGCAGACAGACTTCAAAACGAAGTTAACCGTCTAGCTCAAGAACTTCAAACTGAACAGGAGTCGcc ]
[+] EMBL CD195397 [ CGAAGTAGAAAGCTTAAGAAGTCAATTGGAAATCACAGAAAGATTAAAACGAAAGTTGGAAGAAGAGTCATCGGAGAATATGACAAAATTTGGTGGTTTGACAATACAAGTGAATAATTTGACAGCAGAAAAGAGAAAACTTGAAGGTCAGATAGCTGTGCTTGAAGGTGATTTGGACGATGCGACAGGTGCAAAAGATGTTGCTACAGAGAGAGCAGACAGACTTCAAAACGAAGTTAACCGTCTAGCTCAAGAACTTCAAACTGAACAGGAGTCGTCACGTCGAGCAGATACTGCAAG AAGGCAATTGGAAGCTGAACTGAAAG ACTGTAATGCTAAGATTTTGGATAGCCGAAGAGCAGCTGATGCAGC ]
[-] EMBL CD159919 [ AAATCACAGAAAGATTAAAACGAAAGTTGGAAGAAGAGTCATCGGAGAATATGACAAAATTTGGTGGTTTGACAATACAAGTGAATAATTTGACAGCAGAAAAGAGAAAACTTGAAGGTCAGATAGCTGTGCTTGAAGGTGATTTGGACGATGCGACAGGTGCAAAAGATGTTGCTACAGAGAGAGCAGACAGACTTCAAAACGAAGTTAACCGTCTAGCTCAAGAACTTCAAACTGAACAGGAGTCGTCACGTCGAGCAGATACTGCAAG AAGGCAATTGGAAGCTGAACTGAAAG ACTGTAATGCTAAGATTTTGGAAAGCCGAAGAGCAGCTGATGCAGCAGAACGTGAAGCTGATGATG CCAAAAGTCAAGCCGAGACTAAAATACGGGAATTGC ]
[+] EMBL CD144297 [ GACAAAATTTGGTGGTTTGACAATACAAGTGAATAATTTGACAGCAGAAAAGAGAAAACTTGAAGGTCAGATAGCTGTGCTTGAAGGTGATTTGGACGATGCGACAGGTGCAAAAGATGTTGCTACAGAGAGAGCAGACAGACTTCAAAACGAAGTTAACCGTCTAGCTCAAGAACTTCAAACTGAACAGGAGTCGTCACGTCGAGCAGATACTGCAAGAAAGGC ATTGGAAGCTGAACTGAAAGAACTGT ATGC ]
[+] EMBL CD182999 [ TTTGGTGGTTTGACAATACAAGTGAATAATTTGACAGCAGAAAAGAGAAGACTTGAAGGTCAGATAGCTGTGCTTGATGGTGATTTGGACGATGCGACAGGTGCAAAAGATGTTGCTACAGAGAGAGCAGACAGACTTCAAAACGAAGTTAACCGTCTAGCTCAAGAACTTCAAACTGAACAGGAGTCGTCACGTCGAGCAGATACTGCAAG AAGGCAATTGGAAGCTGAACTGAAAG ACTGTAATGCTAAGA TTTGGAAAGCCGAAGAGCAGCTGATGCAGCAGAACGTGAAGCTGATGATGCCCCAAAGTC AGCCGAGACTAAAATACGAGATTNGCAGCTAGCTTTTAG AGAGGGATCTAGGAAGTCA ]
[+] EMBL CD182978 [ TTTGGTGGTTTGACAATACAAGTGAATAATTTGACAGCAGAAAAGAGAAAACTTGAAGGTCAGATAGCTGTGCTTGAAGGTGATTTGGACGATGCGACAGGTGCAAAAGATGTTGCTACAGAGAGAGCAGACAGACTTCAAAACGAAGTTAACCGTCTAGCTCAAGAACTTCAAACTGAACAGGAGTCGTCACGTCGAGCAGATACTGCAAG AAGGCAATTGGAAGCTGAACTGAAAG ACTGTAATGCTAAGATTTTGGAAAGCCGAAGAGCAGCTGATGCAGCAGAACGTGAAGCTGATGATG CCAAAAGTCAAGCCGAGACT AAATACGAGAA TGCAGCTAGC TTTAGAAGA GGATCTAG AAGTCAAGAGA ]
[+] EMBL CD183137 [ TTTGGTGGTTTGACAATACAAGTGAATAATTTGACAGCAGAAAAGAGAAAACTTGAAGGTCAGATAGCTGTGCTTGAAGGTGATTTGGACGATGCGACAGGTGCAAAAGATGTTGCTACAGAGAGAGCAGACAGACTTCAAAACGAAGTTAACCGTCTAGCTCAAGAACTTCAAACTGAACAGGAGTCGTCACGTCGAGCAGATACTGCAAG AAGGCAATTGGAAGCTGAACTGAAAG ACTGTAATGCTAAGATTTTGGAAAGCCGAAGAGCAGCTGATGCAGCAGAACGTGAAGCTGATGATG CCAAAAGTCAAGCCGAGACTAAAATACGAGATTGGCAGCTAGC TTTAGAAGAGGGATCTAGAAAGTCA ]
[+] EMBL CD183017 [ TTTGGTGGTTTGACAATACAAGTGAATAATTTGACAGCAGAAAAGAGAAAACTTGAAGGTCAGATAGCTGTGCTTGAAGGTGATTTGGACGATGCGACAGGTGCAAAAGATGTTGCTACAGAGAGAGCAGACAGACTTCAAAACGAAGTTAACCGTCTAGCTCAAGAACTTCAAACTGAACAGGAGTCGTCACGTCGAGCAGATACTGCAAG AAGGCAATTGGAAGCTGAACTGAAAG ACTGTAAT ]
[+] EMBL CD202847 [ GATGTTGCTACAGAGAGAGCAGACAGACTTCAAAACGAAGTTAACCGTCTAGCTCAAGAACTTCAAACTGAACAGGAGTCGTCACGTCGAGCAGATACTGCAAG AAGGCAATTGGAAGCTGAACTGAAAG ACTGTAATGCTAAGATTTTGGAAAGCCGAAGAGCAGCTGATGCAGCAGAACGTGAAGCTGATGATG CCAAAAGTCAAGCCGAGACTAAAATACGAGAATTGCAGCTAGC TTTAGAAGAGGAATCTAGAAAGTCAAGAGAGGCCCAAACTCAACTAAGAAAATGTGAGAGAGCACTCAAAGAATCAGTACAAGCTGAACAAGATGCTGGACATATGATAAATGAACTACGTGAAGTGGTTGAACGAGCTCAAACAAAACTGAAACAAACCAGGAAACAGTTAGAAGAAGCAGAANATGC ]
[+] EMBL CD181674 [ CTGTAATGCTAAGATTTTGGAAAGCCGAAGAGCAGCTGATGCAGCAGAACGTGAAGCTGATGATG CCAAAAGTCAAGCCGAGACTAAAATACGAGAATTGCTGCTAGC TTTAGAAGAGGAATCTAGAAAGTCAAGAGAGGCCCAAACTCAACTAAGAAAATGTGAGAGAGCACTCAAAGAATCAGTACAAGCTGAACAAGATGCTGGACATATGATAAATGAACTACGTGAAATGGTTGAACGAGCTCAAACAAAACTGAAACAAACCAGGAAACAGTTAGAAGAAGCAGAAAATGCTGCTCAAACTGCTTCAATGAAATATCGTANAGCTCAACAACAAGTGGATGATGCAGATTTACGTGNCTCAATGGCT]
consensusID : consensus_10445#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 461 fasta sequence
[CTTTACATTTATCACAGGTTGCTACAGAGAGAGCAGACAGACTTCAAAACGAAGTTAACCGTCTAGCTCAAGAACTTCAAACTGAACAGGAGTCGTCACGTCGAGCAGATACTGCAAGAAGGCAATTGGAAGCTGAACTGAAAGACTGTAATGCTAAGATTTTGGAAAGCCGAAGAGCAGCTGATGCAGCAGAACGTGAAGCTGATGATGCCAAAAGTCAAGCCGAGACTAAAATACGAGAATTGCAGCTAGCTTTAGAAGAGGAATCTAGAAAGTCAAGAGAGGCCCAAACTCAACTAAGGTTAGGCAGTTCAATTTATTAGATATTTTCTCAAGTTTCGAGCTTTATTAGCGCCTAAGAAGGTCTGATGAATTACAACAACACTATTATTCCATCACGATCCGTAAAATTCTATTACATTGGAGGTTCTAAGGCTGGTGGTAAGGTTCCAGAGTATTTT]
[-] EMBL CD156079 [CTTTACATTTATCACAGGTTGCTACAGAGAGAGCAGACAGACTTCAAAACGAAGTTAACCGTCTAGCTCAAGAACTTCAAACTGAACAGGAGTCGTCACGTCGAGCAGATACTGCAAGAAGGCAATTGGAAGCTGAACTGAAAGACTGTAATGCTAAGATTTTGGAAAGCCGAAGAGCAGCTGATGCAGCAGAACGTGAAGCTGATGATGCCAAAAGTCAAGCCGAGACTAAAATACGAGAATTGCAGCTAGCTTTAGAAGAGGAATCTAGAAAGTCAAGAGAGGCCCAAACTCAACTAAGGTTAGGCAGTTCAATTTATTAGATATTTTCTCAAGTTTCGAGCTTTATTAGCGCCTAAGAAGGTCTGATGAATTACAACAACACTATTATTCCATCACGATCCGTAAAATTCTATTACATTGGAGGTTCTAAGGCTGGTGGTAAGGTTCCAGAGTATTTT]
[-] EMBL CD156224 [CTTTACATTTATCACAGGTTGCTACAGAGAGAGCAGACAGACTTCAAAACGAAGTTAACCGTCTAGCTCAAGAACTTCAAACTGAACAGGAGTCGTCACGTCGAGCAGATACTGCAAGAAGGCAATTGGAAGCTGAACTGAAAGACTGTAATGCTAAGATTTTGGAAAGCCGAAGAGCAGCTGATGCAGCAGAACGTGAAGCTGATGATGCCAAAAGTCAAGCCGAGACTAAAATACGAGAATTGCAGCTAGCTTTAGAAGAGGAATCTAGAAAGTCAAGAGAGGCCCAAACTCAACTAAGGTTAGGCAGTTCAATTTATTAGATATTTTCTCAAGTTTCGAGCTTTATTAGCGCCTAAGAAGGTCTGATGAATTACAACAACACTATTATTCCATCACGATCCGTAAAATTCTATTACATTGGAGGTTCTAAGGCTGGTGGTAAGGTTCCAGAGTATTTT]
[-] EMBL CD156256 [CTTTACATTTATCACAGGTTGCTACAGAGAGAGCAGACAGACTTCAAAACGAAGTTAACCGTCTAGCTCAAGAACTTCAAACTGAACAGGAGTCGTCACGTCGAGCAGATACTGCAAGAAGGCAATTGGAAGCTGAACTGAAAGACTGTAATGCTAAGATTTTGGAAAGCCGAAGAGCAGCTGATGCAGCAGAACGTGAAGCTGATGATGCCAAAAGTCAAGCCGAGACTAAAATACGAGAATTGCAGCTAGCTTTAGAAGAGGAATCTAGAAAGTCAAGAGAGGCCCAAACTCAACTAAGGTTAGGCAGTTCAATTTATTAGATATTTTCTCAAGTTTCGAGCTTTATTAGCGCCTAAGAAGGTCTGATGAATTACAACAACACTATTATTCCATCACGATCCGTAAAATTCTATTACATTGGAGGTTCTAAGGCTGGTGGTAAGGTTCCAGAGTATTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10445#0 GCCCATTCAGAAACTATTAAATTACATCAAGAAGCAGAAGCACATATTTGTCAATTAGAA 60
consensus_10445#1 ------------------------------------------------------------
consensus_10445#0 ATAGATATAACAGAACTAAATAATTTGGTATCTGAAACTGCAACCACTTTACAGATATGC 120
consensus_10445#1 ------------------------------------------------------------
consensus_10445#0 GAAAGTCGTCGATCTGCTTTATCAAACGAAGTAGAAAGCTTAAGAAGTCAATTGGAAATC 180
consensus_10445#1 ------------------------------------------------------------
consensus_10445#0 ACAGAAAGATTAAAACGAAAGTTGGAAGAAGAGTCATCGGAGAATATGACAAAATTTGGT 240
consensus_10445#1 ------------------------------------------------------------
consensus_10445#0 GGTTTGACAATACAAGTGAATAATTTGACAGCAGAAAAGAGAAAACTTGAAGGTCAGATA 300
consensus_10445#1 ------------------------------------------------------------
consensus_10445#0 GCTGTGCTTGAAGGTGATTTGGACGATGCGACAGGTGCAAAAGATGTTGCTACAGAGAGA 360
consensus_10445#1 ----------------------------CTTTACATTTATCACAGGTTGCTACAGAGAGA 32
* * * * * * ***************
consensus_10445#0 GCAGACAGACTTCAAAACGAAGTTAACCGTCTAGCTCAAGAACTTCAAACTGAACAGGAG 420
consensus_10445#1 GCAGACAGACTTCAAAACGAAGTTAACCGTCTAGCTCAAGAACTTCAAACTGAACAGGAG 92
************************************************************
consensus_10445#0 TCGTCACGTCGAGCAGATACTGCAAGAAGGCAATTGGAAGCTGAACTGAAAGACTGTAAT 480
consensus_10445#1 TCGTCACGTCGAGCAGATACTGCAAGAAGGCAATTGGAAGCTGAACTGAAAGACTGTAAT 152
************************************************************
consensus_10445#0 GCTAAGATTTTGGAAAGCCGAAGAGCAGCTGATGCAGCAGAACGTGAAGCTGATGATGCC 540
consensus_10445#1 GCTAAGATTTTGGAAAGCCGAAGAGCAGCTGATGCAGCAGAACGTGAAGCTGATGATGCC 212
************************************************************
consensus_10445#0 AAAAGTCAAGCCGAGACTAAAATACGAGAATTGCAGCTAGCTTTAGAAGAGGGATCTAGA 600
consensus_10445#1 AAAAGTCAAGCCGAGACTAAAATACGAGAATTGCAGCTAGCTTTAGAAGAGGAATCTAGA 272
**************************************************** *******
consensus_10445#0 AAGTCAAGAGAGGCCCAAACTCAACTAAGAAAATGTGAGAGAGCACTCAAAGAATCAGTA 660
consensus_10445#1 AAGTCAAGAGAGGCCCAAACTCAACTAAG-----GTTAGGCAG--TTCAATTTATTAGAT 325
***************************** ** ** ** **** ** **
consensus_10445#0 CAAGCTGAACAAGATGCTGGACATATGATAAATGAACTACGTGAAGTGGTTGAACGAGCT 720
consensus_10445#1 --ATTTTCTCAAGTTTCGAGCTTTATTAG--------CGCCTAAGAAGGTCTGATGAATT 375
* * **** * * * *** * * * * *** * ** *
consensus_10445#0 CAAACAAAACTGAAACAAACCAGGAAACAGTTAGAAGAAGCAGAANATGCTGCTCAAACT 780
consensus_10445#1 ACAACAACACT--ATTATTCCATC--ACGATCCGTAAAATTCTATTACATTGG------A 425
***** *** * * *** ** * * * ** * * **
consensus_10445#0 GCTTCAATGAAATATCGTANAGCTCAACAACAAGTGGATGATGCAGATTTACGTGNCTCA 840
consensus_10445#1 GGTTCTAAGGCTGGTGGTAAGGTTCCAGAGTATTTT------------------------ 461
* *** * * * *** * ** * * * *
consensus_10445#0 ATGGCT 846
consensus_10445#1 ------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||