These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10466#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 752 fasta sequence [CGCTCTTGGGCATTTAGGTATTTGATACTTCAACGGTTATCATGACCTTGTTCAGCCGGAGATGTGCTCTTAATCTTTCTCCTCTAGTTGAGGTTGCAGCTGCAAAGTTGCATTTGGGACACTACAATTCAAATTATAAACTAGTTGTTAATCCTCATGAAGAAAATACGACTAAAAGTGCCTTTGAGAATGTGACTAGATGGCTTATATTAGCAGATATTTTGAGAGGTCTACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAA-GGACAACTAGATATGATATTGATATGACCAAGTGCATTTATTGCGGGTTTTGCCAGGAAGCGTGTCCAGTAGACGCCATCGTAGAGGGACCAAACTTCGAATATTCTACTGAAACACATGAAGAATTACTATATAATAAAGAAAAATTGCTGCAAAATGGTGATA-GGTGGGAAGTCGAAATCTCAGAAAACCTAAAAGCAGATTATGTATATCGATGAAGTA-TTACTTGGTTCATTTGGTTTTTAAA-TGATC-TAATTCGCAGGATCTTTATGGACTACTAATTTCATATTTAAACAACCAATATTACC] [+] EMBL CD188296 [CGCTCTTGGGCATTTAGGTATTTGATACTTCAACGGCTATCATGACCTTGTTCAGCCGGAGATGTGCTCTTAATCTTTCTCCTCTAGTTGAGGTTGCAGCTGCAAAGTTGCATTTGGGACACTACAATTCAAATTATAAACTAGTTGTTAATCCTCATGAAGAAAATACGACTAAAAGTGCCTTTGAGAATGTGACTAGATGGCTTATATTAGCAGATATTTTGAGAGGTCTACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAA GGACAACTAGATATGATATTGATATGACCAAGTGCATTTA ] [+] EMBL CD094750 [ TATTTGATACTTCAACGGTTATCATGACCTTGTTCAGCCGGAGATGTGCTCTTAATCTTTCTCCTCTAGTTGAGGTTGCAGCTGCAAAGTTGCATTTGGGACACTACAATTCAAATTATAAACTAGTTGTTAATCCTCATGAAGAAAATACGACTAAAAGTGCCTTTGAGAATGTGACTAGATGGCTTATATTAGCAGATATTTTGGGAGGTCTACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAAGGGAC ACTAGATATGATATTGATATGACC ] [+] EMBL CD183406 [ GGTTATCATGACCTTGTTCAGCCGGAGATGTGCTCTTAATCTTTCTCCTCTAGTTGAGGTTGCAGCTGCAAAGTTGCATTTGGGACACTACAATTCAAATTATAAACTAGTTGTTAATCCTCATGAAGAAAATACGACTAAAAGTGCCTTTGAGAATGTGACTAGATGGCTTATATTAGCAGATATTTTGAGAGGTCTACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAA GGACAACTAGATATGATATTGATATGACCAAGTGCATTTATT ] [+] EMBL CD188397 [ GTTATCATGACCTTGTCCAGCCGGAGATGTGCTCTTAATCTTTCTCCTCTAGTTGAGGTTGCAGCTGCAAAGTTGCATTTGGGACACTACAATTCAAATTATAAACTAGTTGTTAATCCTCATGAAGAAAATACGACTAAAAGTGCCTTTGAGAATGTGACTAGATGGCTTATATTAGCAGATATTTTGAGAGGTCTACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTAGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTAT ] [+] EMBL CD165351 [ GTTATCATGACCTTGTTCAGCCGGAGATGTGCTCTTAATCTTTCTCCTCTAGTTGAGGTTGCAGCTGCAAAGTTGCATTTGGGACACTACAATTCAAATTATAAACTAGTTGTTAATCCTCATGAAGAAAATACGACTAAAAGTGCCTTTGAGAATGTGACTAGATGGCTTATATTAGCAGATATTTTGAGAGGTCTACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAA ] [+] EMBL CD165364 [ GTTATCATGACCTTGTTCAGCCGGAGATGTGCTCTTAATCTTTCTCCTCTAGTTGAGGTTGCGGCTGCAAAGTTGCATTTGGGACACTACAATTCAAATTATAAACTAGTTGTTAATCCTCATGAAGAAAATACGACTAAAAGTGCCTTTGAGAATGTGACTAGATGGCTTATATTAGCAGATATTTTGAGAGGTCTACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCT ] [-] EMBL CD189881 [ GTTATCATGACCTTGTTCAGCCGGAGATGTGCTCTTAATCTTTCTCCTCTAGTTGAGGTTGCAGCTGCAAAGTTGCATTTGGGACACTACAATTCAAATTATAAACTAGTTGTTAATCCTCATGAAGAAAATACGACTAAAAGTGCCTTTGAGAATGTGACTAGATGGCTTATATTAGCAGATATTTTGAGAGGTCTACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAA GGACAACTAGATATGATATTGATATGACCAAGTGCATTTATTG ] [+] EMBL CD078353 [ GCTCTTAATCTTTCTCCTCTAGTTGAGGTTGCAGCTGCAAAGTTGCATTTGGGACACTACAATTCAAATTATAAACTAGTTGTTAATCCTCATGAAGAAAATACGACTAAAAGTGCCTTTGAGAATGTGACTAGATGGCTTATATTAGCAGATATTTTGAGAGGTCTACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAA GGACAACTAGATATGATATTGATATGACCAAGTGCATTTATTGCGGGTTTTGCCAGGAAGCGTGTCCAGTAGACGCCATCGTAGAGGGACCAAACTTCGAATATTCTACTGAAACACATGAAAAATTACTATATAATAAAGAAAAATTGCTGCAAAATGGTGATA GGTGGGAAGTCGAAATCTCAGAAAACCTAAAAGCAGATTATGTATATCGATGAAGTA TTACTTGGNTCATTTGGTTTTTAAA TGATC TAATTCGCNAGATCTTTATGGACTACTAATTTCATATTTAAACATCCATTATTAC ] [+] EMBL CD140744 [ CATTTGGGGCGCTACAATTCAAATTATAAACTACTTGCTAATCCTCATGAAGAAAATACGACTAAAAGTGCCTTTGAGAATGTGACTAGATGGCTTATATTATCAGATATTTTGAGAGGTCTACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAG ] [-] EMBL CD133656 [ aAGCAGATATTTTGAGAGGTCCACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCC TTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAA GGACAACTAGATATGATATTGATATGACCAAGTGCATTTATTG ] [-] EMBL CD072913 [ taTTTGAGAGGTCTACGGTTAACCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAA GGACAACTAGATATGATATTGATATGACCAAGTGCATTTATTGCGGGTTTTGCCAGGAAGCGTGTCCAGTAGACGCCATCGTAGAGGGACCAAACTTCGAATATTCTACTGAAACACATGAAAAATTACTATATAATAAAGAAAAATTGCTGCAAAATGGTGATA GGTGGGAAGTCGAAATCTCAGAAAACCTAAAAGCAGATTATGTATATCGATGAAGTA TTACTTGGTTCATTTGGTTTTTAAA TGATC TAATTCGCAGGATCTTTATGGACTACTAATTTCATATTTAAACAATCAATATTAac] [-] EMBL CD133600 [ taTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGCACCCATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAA GGACAACTAGATATGATATTGATATGACCAAGTGCATTTATTG ] [+] EMBL SM647 [ TTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAA GGACAACTAGATATGATATTGATATGACCAAGTGCATCTATTGCGGGTTTTGNCAGGAAGCGTGTCCAGTAGACGCCATCGTAGAGGGACCAAACTTCGNATATTCTACTGAAACACATGAAGAATTACTATATAATAAAGAAAAATTGCTGCAAAATGGNGATA GGTGGNAAGTCGAANTCTCAGAAAACCTAAAAGCAGATTATGTNTNTCGATGAAGTA TTACTTGGg ] [+] EMBL SM659 [ TTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAA GGACAACTAGATATGATATTGATATGACCAAGTGCATTTATTGCGGGTTTTGGCAGGAAGCGTGTCCAGTAGACGCCATCGTAGAGGGACCAAACTTCGAATATTCTACTGAAACACATGAAGAATTACTATATAATAAAGAAAAATNGCTGCAAAATGGTGATAGGGTGGGAAGTCGAAATCTCAGAAAACCNAAAAGCAGGTTATGTNTNTCGATGAAGTATTTACTGGGTCCATTGGGTTTTTAAATTGATCTTAATCCGCAGGATCTTTATGGNCTACTAA TTCA NTTTAAACAANCAA ] [-] EMBL CD061108 [ TGAGGCTGAGCCAAGAGCTGATGGAAGTAGAA GGACAACTAGATATGATATTGATATGACCAAGTGCATTTATTGCGGGTTTTGCCAGGAAGCGTGTCCAGTAGACGCCATCGTAGAGGAACCAAACTTCGAATATTCTACTGAAACACATGAAGAATTACTATATAATAAAGAAAAATTGCTGCAAAATGGTGATA GGTGGGAAGTCGAAATCTCAGAAAACCTAAAAGCAGATTATGTATATCGAT ] consensusID : consensus_10466#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence [CTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAAGGACAACTAGATATGATATTGATATGACCAAGTGCATTTATTGCGGGTTTTGCCAGGAAGCGTGTCCAGTAGACGCCATCGTAGAGGTAACCAATTTGTTCTTTTAAAGTTTTTACTATACTCGTAGTAACAAAGAGCATCTGGCTGGTTCTCTGGCCTGCGTACCAATTTCTCATTAACATATCTTTGAGTTTATTTTATTGCTTATCAGTTCACAACAGCAAAATCCAAATCTACTAGCAAATAATTAGTAATACTTTGTAAACGTTTTAAATTAAGAACCAATAGTTGACTTG] [-] EMBL CD111502 [CTTTCGAGAAGGGTCCTCTCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGTGCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTGAGCCAAGAGCTGATGGAAGTAGAAGGACAACTAGATATGATATTGATATGACCAAGTGCATTTATTGCGGGTTTTGCCAGGAAGCGTGTCCAGTAGACGCCATCGTAGAGGTAACCAATTTGTTCTTTTAAAGTTTTTACTATACTCGTAGTAACAAAGAGCATCTGGCTGGTTCTCTGGCCTGCGTACCAATTTCTCATTAACATATCTTTGAGTTTATTTTATTGCTTATCAGTTCACAACAGCAAAATCCAAATCTACTAGCAAATAATTAGTAATACTTTGTAAACGTTTTAAATTAAGAACCAATAGTTGACTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10466#0 CGCTCTTGGGCATTTAGGTATTTGATACTTCAACGGTTATCATGACCTTGTTCAGCCGGA 60 consensus_10466#1 ------------------------------------------------------------ consensus_10466#0 GATGTGCTCTTAATCTTTCTCCTCTAGTTGAGGTTGCAGCTGCAAAGTTGCATTTGGGAC 120 consensus_10466#1 ------------------------------------------------------------ consensus_10466#0 ACTACAATTCAAATTATAAACTAGTTGTTAATCCTCATGAAGAAAATACGACTAAAAGTG 180 consensus_10466#1 ------------------------------------------------------------ consensus_10466#0 CCTTTGAGAATGTGACTAGATGGCTTATATTAGCAGATATTTTGAGAGGTCTACGGTTAA 240 consensus_10466#1 ------------------------------------------------------------ consensus_10466#0 CCTTTGGTATGATTTTCAAGGAGCCTGCAACCTTAAACTACCCTTTCGAGAAGGGTCCTC 300 consensus_10466#1 ------------------------------------------CTTTCGAGAAGGGTCCTC 18 ****************** consensus_10466#0 TCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGT 360 consensus_10466#1 TCAGTCCTAGATTTCGTGGTGAGCATGCTCTACGTAGGTACCCTAGTGGTGAGGAACGGT 78 ************************************************************ consensus_10466#0 GCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTG 420 consensus_10466#1 GCATCGCTTGCAAACTTTGCGAAGCTATATGTCCAGCCCAAGCAATCACTATTGAGGCTG 138 ************************************************************ consensus_10466#0 AGCCAAGAGCTGATGGAAGTAGAAGGACAACTAGATATGATATTGATATGACCAAGTGCA 480 consensus_10466#1 AGCCAAGAGCTGATGGAAGTAGAAGGACAACTAGATATGATATTGATATGACCAAGTGCA 198 ************************************************************ consensus_10466#0 TTTATTGCGGGTTTTGCCAGGAAGCGTGTCCAGTAGACGCCATCGTAGAGGGACCAAACT 540 consensus_10466#1 TTTATTGCGGGTTTTGCCAGGAAGCGTGTCCAGTAGACGCCATCGTAGAGGTAACCAATT 258 *************************************************** * * ** * consensus_10466#0 TCGAATATTCTACTGAAACACATGAAGAATTACTATATAATAAAGAAAAATTG-CTGCAA 599 consensus_10466#1 T-----GTTCTTTTAAAGTTTTTACTATACTCGTA-GTAACAAAGAGCATCTGGCTGGTT 312 * **** * ** * * * ** *** ***** * ** *** consensus_10466#0 AATGGTGATAGGTGGGAAGTCGAAATCTCAGAAAACCTAAAAGCAGATTATGTATATCGA 659 consensus_10466#1 CTCTGGCCTGCGTACCAATTTCTCATT--AACATATCTTTGAGTTTATTTTAT-TGCTTA 369 * * ** ** * ** * * * ** ** *** * * * * consensus_10466#0 TGAAGTATTACTTGGTTCATTTGGTTTTTAAATGATCTAATTCGCAGGATCTTTATGGAC 719 consensus_10466#1 TCAGTTCACAACAGCAAAATCCAAATCTACTAGCAAATAATTAGTAATA-CTTTGTAAAC 428 * * * * * ** * * * * ***** * * * **** * ** consensus_10466#0 TACTAATTTCATATTTAAACAACCAATATTACC 752 consensus_10466#1 GTTTTAAATTAAGAACCAATAGTTGACTTG--- 458 * * * * ** * * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||