These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10481#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1121 fasta sequence [AATGACAGATAGATACGTTGAAATATAATGATCGATCTTATGTAAGTGTCAAAGAGTTCAAAAATTCAGAATTTATCATGGGTCAACATTCATGTGAATCTTTTACAGAACATTGTTAAGTTAGCACTGGATCAGAACTATCAGAGTTTGATGTGGATTCGAATTTATTCACCATATTTTCCAGAGGTTTGTTGTTAAGAGTTTGTGTTATTTTTTCAGAGGAAAATTCACGTGGTAAAGTCCATACTTTTTTTGGTATTTGTAAATGACCTTGGTCAATTTCAGTTCCCAAAAGCTTCGATGTCAACTTCCGAGGCAAAGTATTTATCTTTCCATTTTTTTAGAGAAGACATCACAACAATAATTGCGTTTCAGCCTTGGGAAAGCTACCCTTAACCCGGACATCAATGGAGAGTGTAGTACAACAGCTGCAACTCGATGAAGAGTAGCCAGATGTATTGTCGGTACAGTCCCAATGCTCTGGCCGTACAAAACAATTTGGTTTAAAGGGACAGAATACTTCGTCCTTAAAACATTTAGTGCACACTCAGCATCAGCATAAAGGTTTTTTTCCAATGGCTTTCCAGAAGATGCTCCATAGCCTGAATAATCGTAACACATGATGTTAACGTTTAACTTGCTACCCAGTTCATACATGAAGTGAAGCATCAGACCCAAGTCCACGGCATTTCCATGGCTTAACAAGAATGTTAGCTTAGATGACGAATTGATAGGCATATAAAGAATCGCGATATTATTCCCCCTTCTAGTTGTAGCCTTCATTGACTCCATGTTTTCCGGGACAAAATGGATAAATGAATCTTTCAAGTATGAAGCCAGAGTAAAGCGGTATGTAGTATGTCCTCCTTCAGTATGTTCTGTCAGTTTATAACTGGAAGGCGGAGGCATAAATGCCAACTTAGCTGCAATTTTGGATGGTAATGGAGGACAACACAATAGTTGACAAATACTGTTGCAGCTTAAATCATTCATCAGTCTGCAATAATGTTGCAAACAAAGCTTTCACTGGGAAACGAAGATGTGCCAAAAGAGCCTTGCGTTCAGTGGTTTTTTCAACATCATTGTCATGAGGAGGAGTTCATAGTTAAATAGAATGATAT] [+] EMBL CD062393 [AATGACAGATAGATACGTTGAAATATAATGATCGATCTTATGTAAGTGTCAAAGAGTTCAAAAATTCAGAATTTATCATGGGTCAACATTCATGTGAATCTTTTACAGAACATTGTTAAGTTAGCACTGGATCAGAACTATCAGAGTTTGATGTGGATTCGAATTTATTCACCATATTTTCCAGAGGTTTGTTGTTAAGAGTTTGTGTTATTTTTTCAGAGGAAAATTCACGTGGTAAAGTCCATACTTTTTTTGGTATTTGTAAATGACCTTGGTCAATTTCAGTTCCCAAAAGCTTCGATGTCAACTTCCGAGGCAAAGTATTTATCTTTCCATTTTTTTAGAGAAGACATCACAACAATAATTGCGTTTCAGCCTTGGGAAAGCTACCCTTAACCCGGACATCAATGGAGAGTGTAGTACAACAGCTGCAACTCGATGAAGAGTAGCCAGATGTATTGTCGGTACAGTCCCAATGCTCTGGCCGTACAAAACAATTTGGTTTAAAGGGACCGAATACTTCGTCCTT ] [-] EMBL SM58060 [ ttACCCGGACATCAATGGAGAGTGTAGTACAACAGCTGCAACRCGATGAAGAGTAGCCAGATGTATTGTCGGTACAGTCCCAATGCTCTGGCCGTACAAAACAATTTGGTTTAAAGGGACAGAATKC TCGTCCRTAAAACATTTAGTGCACACTCAGCATCAGCATAAAGGTTTTTTTCCAATGGCTTTCCAGAAGATGCTCCATAGCCTGAATAATCGTAACACATGATGTTAACGTTTAACTTGCTACCCAGTTCATACATGAAGTGAAGCATCAGACCCAAGTCCACGGCATTTCCAT GCTTAACAAGAATGTTAGCTTAGATGACGAATTGATAGGCATATAAAGAATCGCGATATTATTCCCCCTTCTAGTTGT ] [-] EMBL CD192696 [ GTAGTACAACAGCTGCAACTCGATGAAGAGTAGCCAGATGTATTGTCGGTACAGCCCCAATGCTCTGGCCGTACAAAACAATTTGGTTTAAAGGGACAGAATACTTCGTCCTTAAAACATTTAGTGCACACTCAGCATCAGCATAAAGGTTTTTTTCCAATGGCTTTCCAGAAGATGCTCCATAGCCTGAATAATCGTAACACATGATGTTAACGTTTAACTTGCTACCCAGTTCATACATGAAGTGAAGCATCAGACCCAAGTCCACGGCATTTCCATGGCTTAACAAGAATGTTAGCTTAGATGACGAATTGATAGGCATATAAAGAATCGCGATATTATTC ] [-] EMBL AI975703 [ GCCTGAATAATCGTAACACATGATGTTAACGTTTAACTTGCTACCCAGTTCATACATGAAGTGAAGCATCAGACCCAAGTCCNCGGCATTTCCATGGCTTAACAAGAATGTTAGCTTAGATGACGAATTGATAGGCATATAGAGAATCGCGATATTATTCCCCCTTCTAGTTGTAGCCTTCATTGACTCCATGTTTTCCGGGACAAAATGGATAAATGAATCTTTCAAGTATGAAGCCAGAGTAAAGCGGTATGTAGTATGTCCTCCTTCAGTATGTTCTGTCAGTTTATAACTGGAAGGCGGAGGCATAAATGCCAACTTAGCTGCAATTTTGGATGGTAATGGAGGACAACACAATAGTTGACAAATACTGTTGCAGCTTAAATCATTCATCAGTCTGCAATAATGTTGCAAACAAAGCTTTCACTGGGAAACGAAGATGTGCCAAAAGAGCCTTGCGTTCAGTGGTTTTTTCAACATCATTGTCATGAGGAGGAGTTCATAGTTAAATAGAATGATAT] consensusID : consensus_10481#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1054 fasta sequence [TTCGAATTTATTCACCATATTTTCCAGAGGTTTGTTGTTAAGAGTTTGTGTTATTTTTTTCAGAGGAAAATTCACGTGGTAAAGTCCATACTTTTTTTTGGTATTTGTAAATGACCTTGGTCAATTTCAGTTCCCAAAAGCTTCGATGTCAACTTCCGAGGCAAAGTATTTATCTTTCCATTTTTCTGAGTATGTAAAGACCACAATAATTCAGACGATTGGAAAAAATCCGAATCACCGTTTGTAGGTGGCGGAGGAGGTGGAGGAAGAGTAAGGTTACAAATGTCAGATGGAAGTGAATGCAAATCATCAAGTGAAATGCTAGACAGACAATCAGTTGTAACTACTGAAAACTGGGAAACAACAGCTTCATTCTGATCCATGCACTTTTCCACAGCAATCTGGCTTCCTACTTGTACATCAGAATCGTTATGGTGTCTACTAACACCAATCAGACAGGTACTAGGATCATCAACGGACTTAAAGCACTTTTGTGATGATAACGATGGAGTTGGGCTGGTTCGTTGAGGAGAATGAATGATTTCATCAGGAGGTATCTGTTCGCAAACGTTACTTACACTGAGCCTGCTAGACATTGAGTCCGAAGTAAGGTTCCAAGAAGGACGTGAGAAAAAAAGCTTTGTTGATTTATCTTCCTCTCCCCCTACTGTATTGCCATTCATGCTAAAATACCCATGAGAATTTAGTGAAACCGGTACAGAGTTCGAACTAGATAAATCTGACTGACTATCCTCTTTAACTGTCGCTTTATCCAGTAGTCTAGACGACTCTACTTCCGTATCTCCTACTTCAGAAACATTTTGTGAACAATTAGAATTCAACAGTAATCGAGGTAATTCCACAGTAACCAACTTAGTTAGGCGCAAAAGACACTGAGGGAAAAGTTCGCAGTCATTGTGTCCGGCTCCATCAATGAAAAGAGGATCCAACAATAGATTACCTGCTACAGCAGAACATATACGGTAACCGTGAGTAACGTTCACAACCTCATCACGTGTCCCATGAATCACTAATGTAGGTGAGATAATTTTCG] [-] EMBL CD194928 [TTCGAATTTATTCACCATATTTTCCAGAGGTTTGTTGTTAAGAGTTTGTGTTATTTTTTTCAGAGGAAAATTCACGTGGTAAAGTCCATACTTTTTTTTGGTATTTGTAAATGACCTTGGTCAATTTCAGTTCCCAAAAGCTTCGATGTCAACTTCCGAGGCAAAGTATTTATCTTTCCATTTTTCTGAGTATGTAAAGACCACAATAATTCAGACGATTGGAAAAAATCCGAATCACCGTTTGTAGGTGGCGGAGGAGGTGGAGGAAGAGTAAGGTTACAAATGTCAGATGGAAGTGAATGCAAATCATCAAGTGAAATGCTAGACAGACAATCAGTTGTAACTACTGAAAACTGGGAAAC ] [-] EMBL CD195107 [ GGTGNCGGAGNAGGTGGAGNAAGAGTAAGGTTACAAATGTCAGATGGAAGTGAATGCAAATCATCAAGTGAAATGCTAGACAGACAATCAGTTGTAACTACTGAAAACTGGGAAACAACAGCTTCATTCTGATCCATGCACTTTTCCACAGCAATCTGGCTTCCTACTTGTACATCAGAATCGTTATGGTGTCTACTAACACCAATCAGACAGGTACTAGGATCATCAACGGACTTAAAGCACTTTTGTGATGATAACGATGGAGTTGGGCTGGTTCGTTGAGGAGAATGAATGATTTCATCAGGAGGTATCTGTTCGCAAACGTTACTTACACTGAGCCTGCTAGACATTGAGTCCGAAGTAAGGTTCCAAGAAGGACGTGAGAAAAAAAGCTTTGTTGATTTATCTTCCTCTCCCCCTACTGTATTGCCATTCATGCTAAAATACCCATGAGAATTTAGTGAAACCGGTAC ] [+] EMBL CD182369 [ GGTTACAAATGTCAGATGGAAGTGAATGCAAATCATCAAGTGAAATGCTAGACAGACAATCAGTTGTAACTACTGAAAACTGGGAAACAACAGCTTCATTCTGATCCATGCACTTTTCCACAGCAATCTGGCTTCCTACTTGTACATCAGAATCGTTATGGTGTCTACTAACACCAATCAGACAGGTACTAGGATCATCAACGGACTTAAAGCACTTTTGTGATGATAACGATGGAGTTGGGCTGGTTCGTTGAGGAGAATGAATGATTTCATCAGGAGGTATCTGTTCGC AACGTTACTTACACTGAGCCTGCTAGACATTGAGTCCGAAGTAAGGTTCC AGAAGGACGTGAGAAAAAAAGCTTTTGTGA ] [-] EMBL CD190599 [ CAGAATCGTTATGGTGTCTACTAACACCAATCAGACAGGTACTAGGATCATCAACGGACTTAAAGCACTTTTGTGATGATAACGATGAAGTTGGGCTGGTTCGTTGAGGAGAATGAATGA TTCATCAGGAGGTATCTGTTCGCAAACGTTACTTACACTGAGCCTGCTAGACATTGAGTCCGAAGTAAGGTTCCAAGAAGGACGTGAGAAAAAAAGCTTTGTTGATTTATCTTCCTCTCCTCCTACTGTATTGCCATTCATGCTAAAATACCCATGAGAATTTAGTGAAACCGGTACAGAGTTCGAACTAGATAAATCTGACTGACTATCCTCTTTAACTGTCGCTTTATCCAGTAGTCTAGACGACTCTACTTCCGTATCTCCTACTTCAGAAACATTTTGTGAACAATTAGAATTCAACAGTAATCGAGGTAATTCCACAGTAACCAACTTAGTTAGGCGCAAAAGACACTGAGGGAAAAGTTCGCAGTCATTGTGTCCGGCTCCATCAATGAAAAGAGGATCCAACAATAGATTACCTGCTACAGCAGAACATAT ] [-] EMBL CD124802 [ GTCGCTTTATCCAGTAGTCTAGACGACTCTACTTCCGTATCTCCTACTTCAGAAACATTTTGTGAACAATTAGAATTCAACAGTAATCGAGGTAATTCCACAGTAACCAACTTAGTTAGGCGCAAAAGATACTGAGGGAAAAGTTCGCAGTCATTGTGTCCGGCTCCATCAATGAAAAGAGGATCCAACAATAGATTACCTGCTACAGCAGAACATATACGGTAACCGTGAGTAACGTTCACAACCTCATCACGTGTCCCATGAATCACTAATGTAGGTGAGATAATTTTCG] consensusID : consensus_10481#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 879 fasta sequence [CGGAGCCATTAATTCGGCACGCAGGTTCATGTTGAAGTGGATGGCCCCGGTGTACCAAATCATTCCCAAGAATCGAATTCAACTAATAGGAATATACGGTTCAGTAATGGACTATTGAAATACTTTTGTCGGAATCGCAAATCTTCTGAAAATAATTCAAAACAAATCTCATCAATCCAAATTTCACGGAAATCCAAATCACCAAAAGACGAATTACATAAACAGTCTGATGTATGTATATCTGATGCATCTAATTGTCATGAGAAAACACTGACCTCAATCACTCCTATGTGGATGCGAAAACGAGGACTTCATGGTTCATATAGATATGTCAGTAACTCTAGAACTGATAAGCGCAGATGTAAACGAATTCATTCCTTATCCGTTAATCCACCGAGTAAGCCCTCTGATCAGTTAGAGGCTAGTGTAATTCCAGAAAGAGCTGATATCAAGTTAGAATGTGTGGATCACGGTGGTTTACTCGACGAGTCGGATAATAAGACATCGAAACTAATAACGAATATATAGAATAGTAGCTGCTAAGTTCCTTCCTTGAGATTC-TTTTTTTTCCCGAGAGAAACTATTTGAAGTGTCTTCCGGTCTCACTGATTCGAAAATTTAATATTGTAATAGGTAAAGACTTCTACTGAATTTTTAGGATTTTCCTTAACAAAAAGCTCAGTGATTGACTACCGCTACATCTTAAATGTACATAATTTTGCTTTTGATGTTAGATTTTGTTTCAATGTTTCCTATTTCATAATGAAACGGTATTATTTTCATAATTGTATATACATATTCAATAAAATGTGAACTTCTATGAATAATTATTATGNCG-TTAATACTATTAGATTATTTCAGTTAATTAAAGTTGTATCA] [+] EMBL CD081783 [CGGAGCCATTAATTCGGCACGCAGGTTCATGTTGAAGTGGATGGCCCCGGTGTACCAAATCATTCCCAAGAATCGAATTCAACTAATAGGAATATACGGTTCAGTAATGGACTATTGAAATACTTTTGTCGGAATCGCAAATCTTCTGAAAATAATTCAAAACAAATCTCATCAATCCAAATTTCACGGAAATCCAAATCACCAAAAGACGAATTACATAAACAGTCTGATGTATGTATATCTGATGCATCTAATTGTCATGAGAAAACACTGACCTCAATCACTCCTATGTGGATGCGAAAACGAGGACTTCATGGTTCATATAGATATGTCAGTAACTCTAGAACTGATAAGCGCAGATGTAAACGAATTCATTCCTTATCCGTTAATCCACCGAGTAAGCCCTCTGATCAGTTAGAGGCTAGTGTAATTCCAGAAAGAGCTGATATCAAGTTAGAATGTGTGGATCACGGTGGTCTACTCGACGAGTCGGATAATAAGACATCGAAACTAATAACGAATATATAGAATAGTAGCTGCTAAGTTCCTTCCTTGAGATTC TTTTTTTTCCCGAGAGAAACTATTTGAAGTGTCTTCCGGTCTCACTGATTCGAAAATTTAATATTGTAATAGGTAAAGACTTCTACTGAATTTTTAGGATTTTCCTTAACAAAAAGCTCAGTGATTGACTACCGCTACATCTTANATGTACACAATTTTGCTTTTGATGTTAGATTTTGTTTCAATGTTTCCTATTTCATAATGAAACGGTATTATTTTCATAATTGTATATACATATTCAATAAAATGTGAACTTCTATGAATAATTATTATGNCG TTAATACTATTAGATTATTTCAGTTAATTAAAGTTGTATC ] [-] EMBL CD075514 [ TTCAAAACAAATCTCATCAATCCAAATTTCACGGAAATCCAAATCACCAAAAGACGAATTACATAAACAGTCTGATGTATGTATATCTGATGCATCTAATTGTCATGAGAAAACACTGACCTCAATCACTCCTATGTGGATGCGAAAACGAGGACTTCATGGTTCATATAGATATGTCAGTAACTCTAGAACTGATAAGCGCAGATGTAAACGAATTCATTCCTTATCCGTTAATCCACCGAGTAAGCCCTCTGATCAGTTAGAGGCTAGTGTAATTCCAGAAAGAGCTGATATCAAGTTAGAATGTGTGGATCACGGTGGTTTACTCGACGAGTCGGATAATAAGACATCGAAACTAATAACGAATATATAGAATAGTAGCTGCTAAGTTCCTTCCTTGAGATTC TTTTTTTTCCCGAGAGAAACTATTTGAAGTGTCTTCCGGTCTCACTGATTCGAAAATTTAATATTGTAATAGGTAAAGACTTCTACTGAATTTTTAGGATTTTCCTTAACAAAAAGCTCAGTGATTGACTACCGCTACATCTTAAATGTACATAATTTTGCTTTTGATGTTAGATTTTGTTTCAATGTTTCCTATTTCATAATGAAACGGTATTATTTTCATAATTGTATATACATATTCAATAAAATGTGAACTTCTATGAATAATTATTATG CGTTTAATACTATTAGATTATTTCAGTTGATTAAAGTTGTATCA] [-] EMBL CD075136 [ ATAAACAGTCTGATGTATGTATATCTGATGCATCTAATTGTCATGAGAAAACACTGACCTCAATCACTCCTATGTGGATGCGAAAACGAGGACTTCATGGTTCATATAGATATGTCAGTAACTCTAGAACTGATAAGCGCAGATGTAAACGAATTCATTCCTTATCCGTTAATCCACCGAGTAAGCCCTCTGATCAGTTAGAGGCTAGTGTAATTCCAGAAAGAGCTGATATCAAGTTAGAATGTGTGGATCACGGTGGTTTACTCGACGAGTCGGATAATAAGACATCGAAACTAATAACGAATATATAGAATAGTAGCTGCTAAGTTCCTTCCTTGAGATTCTTTTTTTTTCCCGAGAGAAACTATTTGAAGTGTCTTCCGGTCTCACTGATTCGAAAATTTAATATTGTAATAGGTAAAGACTTTTACTGAATTTTTAGGATTTTCCTTAACAAAAAGCTCAGTGATTGACTACCGCTACATCTTAAATGTACATAATTTTGCTTTTGATGTTAGATTTTGTTTCAATGTTTCCTATTTCATAATGAAACGGTATTATTTTCATAATTGTATATACATATTCAATAAAATGTGA ] [-] EMBL CD073052 [ GTGGATGCGAAAACGAGGACTTCATGGTTCATATAGATATGTCAGTAACTCTAGAACTGATAAGCGCAGATGTAAACGAATTCATTCCTTATCCGTTAATCCACCGAGTAAGCCCTTTGATCAGTTAGAGGGTAGTGTAATTCCAGAAAGAGCTGATATCAAGTTAGAATGTGTGGATCACGGTGGTTTACTCGACGAGTCGGATAATAAGACATCGAAACTAATAACGAATATATAGAATAGTAGCTGGTAAGTTCCTTCCTTGAGATTCTTTTTTTTTCCCGAGAGAAACTATTTGAAGTGTTTTCCGGTTTCACTGATTTGAAAATTTAATATTGTAATAGGTAAAGACTTTTACTGAATTTTTAGGATTTTCCTTAACAAAAAGCTCAGTGATTGACTACCGCTACATTTTAAATGTACATAATTTTGCTTTTGATGTTAGATTTTGTTTCAATGTTTCCTATTTCATAATGAAACGGTATTATTTTCATAATTGTATATACATATTCAATAAAATGTGA ] consensusID : consensus_10481#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 830 fasta sequence [CCTCCGAGGCCAGAATTCGGCACGAGGCTTATCCGCTTAGAATACTTAGTTCATGTTGAAGTGGATGGCCCCGGTGTACCAAATCATTCCCAAGAATCGAATTCAACTAATAGGAATATACGGTTCAGTAATGGACTATTGAAATACTTTTGTCGGAATCGCAAATCTTCTGAAAATAATTCAAAACAAATCTCATCAATCCAAATTTCACGGAAATCCAAATCACCAAAAGACGAATTACATAAACAGTCTGATGTATGTATATCTGATGCATCTAATTGTCATGAGAAAACACTGACCTCAATCACTCCTATGTGGATGCGAAAACGAGGACTTCATGGTTCATATAGATATGTCAGTAACTCTAGAACTGATAAGCGCAGATGTAAACGAATTCATTCCTTATCCGTTAATCCACCGAGTAAGCCCTCTGATCAGTTAGAGGCTAGTGTAATTCCAGAAAGAGCTGATATCAAGTTAGAATGTGTGGATCACGGTGGTCTACTCGACGAGTCGGATAATAAGACATCGAAACTAATAACGAATATATAGAATAGTAGCTGCTAAGTTCCTTCCTTGAGATTCTTTTTTTTTCCCGAGAGAAACTATTTGAAGTGTCTTCCGGTCTCACTGATTCGAAAATTTAATATTGTAATAGGTAAAGACTTCTACTGAATTTTTAGGATTTTCCTTAACANAAAGCTCAGTGATTGACTACCGCTACATCTTAAATGTACATAANNTTTGCTTTTGATGTAGATTTTGTTNCAATGTTTCCCTATTCATATGAAACGGNATATTTTATAATGGATATCATATTCAATAAAGTG] [+] EMBL CD081304 [CCTCCGAGGCCAGAATTCGGCACGAGGCTTATCCGCTTAGAATACTTAGTTCATGTTGAAGTGGATGGCCCCGGTGTACCAAATCATTCCCAAGAATCGAATTCAACTAATAGGAATATACGGTTCAGTAATGGACTATTGAAATACTTTTGTCGGAATCGCAAATCTTCTGAAAATAATTCAAAACAAATCTCATCAATCCAAATTTCACGGAAATCCAAATCACCAAAAGACGAATTACATAAACAGTCTGATGTATGTATATCTGATGCATCTAATTGTCATGAGAAAACACTGACCTCAATCACTCCTATGTGGATGCGAAAACGAGGACTTCATGGTTCATATAGATATGTCAGTAACTCTAGAACTGATAAGCGCAGATGTAAACGAATTCATTCCTTATCCGTTAATCCACCGAGTAAGCCCTCTGATCAGTTAGAGGCTAGTGTAATTCCAGAAAGAGCTGATATCAAGTTAGAATGTGTGGATCACGGTGGTCTACTCGACGAGTCGGATAATAAGACATCGAAACTAATAACGAATATATAGAATAGTAGCTGCTAAGTTCCTTCCTTGAGATTCTTTTTTTTTCCCGAGAGAAACTATTTGAAGTGTCTTCCGGTCTCACTGATTCGAAAATTTAATATTGTAATAGGTAAAGACTTCTACTGAATTTTTAGGATTTTCCTTAACANAAAGCTCAGTGATTGACTACCGCTACATCTTAAATGTACATAANNTTTGCTTTTGATGTAGATTTTGTTNCAATGTTTCCCTATTCATATGAAACGGNATATTTTATAATGGATATCATATTCAATAAAGTG] [+] EMBL CD078587 [ CTTATCCGCTTAGAATACTTAGTTCATGTTGAAGTGGATGGCCCCGGTGTACCAAATCATTCCCAAGAATCGAATTCAACTAATAGGAATATACGGTTCAGTAATGGACTATTGAAATACTTTTGTCGGAATCGCAAATCTTCTGAAAATAATTCAAAACAAATCTCATCAATCCAAATTTCACGGAATTCCAAATCACCAAAAGACGAATTACATAAACAGTCTGATGTATGTATATCTGATGCATCTAATTGTCATGAGAAAACACTGACCTCAATCACTCCTATGTGGATGCGAAAACGAGGACTTCATGGTTCATATAGATATGTCAGTAACTCTAGAACTGATAAGCGCAGATGTAAACGAATTCATTCCTTATCCGTTAATCCACCGAGTAAGCCCTCTGATCAGTTAGAGGCTAGTGTAATTCCAGAAAGAGCTGATATCAAGTTAGAATGTGTGGATCACGGTGGTCTACTCGACGAGTCGGATAATAAGACATCGAAACTAATAACGAATATATAGAATAGTAGCTGCTAAGTTCCTTCCTTGAGATTCTTTTTTTTTCCCGAGAGAAACTATTTGAAGTGTCTTCCGGTCTCACTGATTCGAAAATTTAATATTGGTATAGGTAAAGACTTCTACTGAATT ] consensusID : consensus_10481#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 639 fasta sequence [GCTTTCCCAAGGCTGAAACGCAATTATTGTTGTGATGTCTTCTCTAACTATGTACGTGCTCCTCGGATCATTTCACCAACATTGATTATTCATGGCACTGAAGATGAAATAATCGATCGAGTTCATGCCCAGAGGTTGTACGAACGTATTCCTAATACTTTGGAACCACTATTTATTCGTGGAGCTGGTCATAATGATTGTGAACTGTATGAAGAATATCTTATCCGCTTAGAATACTTAGTTCATGTTGAAGTGGATGGCCCCGGTGTACCAAATCATTCCCAAGAATCGAATTCAACTAATAGGAATATACGGTTCAGTAATGGACTATTGAAATACTTTTGTCGGAATCGCANATCTTCTGANAATAATTCAAAACAAATCTCATCAATCCAAATTTCACGGAAATCCANATCACCAAAAGACGAATTACATAAACAGTCTGATGTATGTATATCTGATGCATCTAATTGTCATGAGAAAACACTGACCTCAATCACTCCTATGTGGATGCGAAAACGAGGACTTCATGGNTCATATAGATATGTCAGTAACTCTAGAACTGANTAGCGCAGATGTAAACGAATTCATTCTTNATNNCCGGTATCCACCGAAGTAGCCCTCTGATCAGTTAGAGGC] [+] EMBL CD132902 [GCTTTCCCAAGGCTGAAACGCAATTATTGTTGTGATGTCTTCTCTAACTATGTACGTGCTCCTCGGATCATTTCACCAACATTGATTATTCATGGCACTGAAGATGAAATAATCGATCGAGTTCATGCCCAGAGGTTGTACGAACGTATTCCTAATACTTTGGAACCACTATTTATTCGTGGAGCTGGTCATAATGATTGTGAACTGTATGAAGAATATCTTATCCGCTTAGAATACTTAGTTCATGTTGAAGTGGATGGCCCCGGTGTACCAAATCATTCCCAAGAATCGAATTCAACTAATAGGAATATACGGTTCAGTAATGGACTATTGAAATACTTTTGTCGGAATCGCANATCTTCTGANAATAATTCAAAACAAATCTCATCAATCCAAATTTCACGGAAATCCANATCACCAAAAGACGAATTACATAAACAGTCTGATGTATGTATATCTGATGCATCTAATTGTCATGAGAAAACACTGACCTCAATCACTCCTATGTGGATGCGAAAACGAGGACTTCATGGNTCATATAGATATGTCAGTAACTCTAGAACTGANTAGCGCAGATGTAAACGAATTCATTCTTNATNNCCGGTATCCACCGAAGTAGCCCTCTGATCAGTTAGAGGC] [+] EMBL CD119265 [ GAAATAATCGATCGAGTTCATGCCCAGAGGTTGTACGAACGTATTCCTAATACTTTGGAACCACTATTTATTCGTGGAGCTGGTCATAATGATTGTGAACTGTATGAAGAATATCTTATCCGCTTAGAATACTTAGTTCATGTTGAAGTGGATGGCCCCGGTGTACCAAATCATTCCCAAGAATCGAATTCAACTAATAGGAATATACGGTTCAGTAATGGACTATTGAAATACTTTTGTCGGAATCGCAAATCTTCTGAAAATAATTCAAAACAAATCTCATCAATCCAAATTTCACGGAAATCCAAATCACCAAAAGACGAATTACATAAACAGTCTGATGTATGTATATCTGATGCATCTAATTGTCATGAGAAAACACTGACCTCAATCACTCCTATGTGGATGCGAAAACGAGGACTTCATGGTTCATATAGATATGTCAGTAACTCTAGAACTGATAAGCGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10481#2 ------------------------------------------------------------ consensus_10481#3 ------------------------------------------------------------ consensus_10481#4 -----GCTTTCCCAAGGCTGAAACGCAATTATTGTTGTGATGTCTTCTCTAACTATGTAC 55 consensus_10481#0 AATGACAGATAGATACGTTGAAATATAATGATCGATCTTATGTAAGTGTCAAAGAGTTCA 60 consensus_10481#1 ------------------------------------------------------------ consensus_10481#2 ------------------------------------------------------------ consensus_10481#3 ------------------------------------------------------------ consensus_10481#4 GTGCTCCTCGGATCATTTCACCAACATTGATTATTCATGGCACTGAAGATGAAATAATCG 115 consensus_10481#0 AAAAT--TCAGAATTTATCATGGGTCAACATTCATGTGAATCTTTTACAGAACATTGTTA 118 consensus_10481#1 ------------------------------------------------------------ consensus_10481#2 ------------------------------------------------------------ consensus_10481#3 ------------------------------------------------------------ consensus_10481#4 ATCGAGTTCATGCCCAGAGGTTGTACGAACGTATTCCTAATACTTTGGAACCACTATTTA 175 consensus_10481#0 AGTTAGCACTGGATCAGAACTATCAGAGTTTGATGTGGATTCGAATTTATTCACCATATT 178 consensus_10481#1 ---------------------------------------TTCGAATTTATTCACCATATT 21 consensus_10481#2 ---------------------------------------CGGAG-----CC-ATTAATTC 15 consensus_10481#3 ------------CCTCCGAGGCCAGAATTCGGCA-----CGAGG-----CTTATCCGCTT 38 consensus_10481#4 TTCGTGGAGCTGGTCATAATGATTGTGAACTGTA-----TGAAGAATATCTTATCCGCTT 230 consensus_10481#0 TTCCAGAGGTTTGTTGTTAAGAGTTTGTGTTATTTTTT-CAGAGGAAAATTCACGTGGT- 236 consensus_10481#1 TTCCAGAGGTTTGTTGTTAAGAGTTTGTGTTATTTTTTTCAGAGGAAAATTCACGTGGT- 80 * * * consensus_10481#2 GGCACGCA-GGTTCATGT-TGAA---GTGGATGGCCCCGGTGTACCAAATCATTCCCAAG 70 consensus_10481#3 AGAATACTTAGTTCATGT-TGAA---GTGGATGGCCCCGGTGTACCAAATCATTCCCAAG 94 consensus_10481#4 AGAATACTTAGTTCATGT-TGAA---GTGGATGGCCCCGGTGTACCAAATCATTCCCAAG 286 consensus_10481#0 AAAGTCCATACTTTTTTT-GGTATTTGTAAATGACCTTGGTCAATTTCAGTTCCCAAAAG 295 consensus_10481#1 AAAGTCCATACTTTTTTTTGGTATTTGTAAATGACCTTGGTCAATTTCAGTTCCCAAAAG 140 * ** * * * * ** *** ** *** * * * *** consensus_10481#2 AATCGAATTCAACTAATAGGAATATACGGTTCAGTAATGGACTATTGAAATACTTTTGTC 130 consensus_10481#3 AATCGAATTCAACTAATAGGAATATACGGTTCAGTAATGGACTATTGAAATACTTTTGTC 154 consensus_10481#4 AATCGAATTCAACTAATAGGAATATACGGTTCAGTAATGGACTATTGAAATACTTTTGTC 346 consensus_10481#0 CTTCGATGTCAACTTCC-GAGGCAAAGTATTTATCTTTCCATTTTTTTAGAGAAGACATC 354 consensus_10481#1 CTTCGATGTCAACTTCC-GAGGCAAAGTATTTATCTTTCCATTTTTCTGAGTATGTAAAG 199 **** ****** * * * ** * * * * ** consensus_10481#2 GGAATCGCAAAT---CTTCTGAAAATAATTCAAAACAAATCTCATCAATCCA-----AAT 182 consensus_10481#3 GGAATCGCAAAT---CTTCTGAAAATAATTCAAAACAAATCTCATCAATCCA-----AAT 206 consensus_10481#4 GGAATCGCANAT---CTTCTGANAATAATTCAAAACAAATCTCATCAATCCA-----AAT 398 consensus_10481#0 ACAACAATAATT---GCGTTTCAGC---CTTGGGAAAGCTACCCTTAACCCG-----GAC 403 consensus_10481#1 ACCACAATAATTCAGACGATTGGAAAAAATCCGAATCACCGTTTGTAGGTGGCGGAGGAG 259 * * * * * * * * consensus_10481#2 TTCACGGAAATCCAAATC-ACCA----AAAGACGAATTACATAAACAGTCTGATGTATGT 237 consensus_10481#3 TTCACGGAAATCCAAATC-ACCA----AAAGACGAATTACATAAACAGTCTGATGTATGT 261 consensus_10481#4 TTCACGGAAATCCANATC-ACCA----AAAGACGAATTACATAAACAGTCTGATGTATGT 453 consensus_10481#0 ATCAATGGAGAGTGTAGT-ACAA----CAGCTGCAACTCGATGAAGAGTA-GCCAGATGT 457 consensus_10481#1 GTGGAGGAAGAGTAAGGTTACAAATGTCAGATGGAAGTGAATGCAAATCA--TCAAGTGA 317 * * * ** * * ** * ** * * ** consensus_10481#2 ATATCTGATGCA-TCTAATTGTCATGAGAAAACACTGACCTCAATCA---CTCCTATGTG 293 consensus_10481#3 ATATCTGATGCA-TCTAATTGTCATGAGAAAACACTGACCTCAATCA---CTCCTATGTG 317 consensus_10481#4 ATATCTGATGCA-TCTAATTGTCATGAGAAAACACTGACCTCAATCA---CTCCTATGTG 509 consensus_10481#0 ATTGTCGGTACAGTCCCAATGCTCTGGCCGTACAAAA----CAATTT---GGTTTAAAGG 510 consensus_10481#1 AATGCTAG-ACAGACAATCAGTTGTAACTACTGAAAACTGGGAAACAACAGCTTCATTCT 376 * ** * * * * ** * consensus_10481#2 GATGCGAAAACGAGGACTTCATGGTTCATATAGATATGTCAGTAACTCTAGAA--CTGAT 351 consensus_10481#3 GATGCGAAAACGAGGACTTCATGGTTCATATAGATATGTCAGTAACTCTAGAA--CTGAT 375 consensus_10481#4 GATGCGAAAACGAGGACTTCATGGNTCATATAGATATGTCAGTAACTCTAGAA--CTGAN 567 consensus_10481#0 GACAGAATACTTCGTCCTTAAAACATTTAGTGCACAC-TCAGCATCAGCATAA--AGGTT 567 consensus_10481#1 GATCCATGCACTTTTCCACAGCAATCTGGCTTCCTACTTGTACATCAGAATCGTTATGGT 436 ** * * * * * * * * consensus_10481#2 AAGCGCAGATG-TAAACGAATTCATTCCTT-ATCCGTTA-ATCCACCGAGTAA----GCC 404 consensus_10481#3 AAGCGCAGATG-TAAACGAATTCATTCCTT-ATCCGTTA-ATCCACCGAGTAA----GCC 428 consensus_10481#4 TAGCGCAGATG-TAAACGAATTCATTCTTN-ATNNCCGGTATCCACCGAAGTA----GCC 621 consensus_10481#0 TTTTTCCAATGGCTTTCCAGAAGATGCTCC-ATAGCCTGAATAATCGTAACAC----ATG 622 consensus_10481#1 GTCTACTAACACCAATCAGACAGGTACTAGGATCATCAACGGACTTAAAGCACTTTTGTG 496 * * * * * ** * consensus_10481#2 CTCTGATCAGTTAGAGGC--TAGTGTAATTCC--AGAAAGAGCTGA--TATCAA-----G 453 consensus_10481#3 CTCTGATCAGTTAGAGGC--TAGTGTAATTCC--AGAAAGAGCTGA--TATCAA-----G 477 consensus_10481#4 CTCTGATCAGTTAGAGGC------------------------------------------ 639 consensus_10481#0 ATGTTAACGTTTAACTTG--CTACCCAGTTCA--TACATGAAGTGAAGCATCAG-----A 673 consensus_10481#1 ATGATAACGATGGAGTTGGGCTGGTTCGTTGAGGAGAATGAATGATTTCATCAGGAGGTA 556 * * * * consensus_10481#2 TTAGAATGTG--TGG-ATCACGGT--GGTTTACTCGACGAGTCGGATAATAAGAC--ATC 506 consensus_10481#3 TTAGAATGTG--TGG-ATCACGGT--GGTCTACTCGACGAGTCGGATAATAAGAC--ATC 530 consensus_10481#4 ------------------------------------------------------------ consensus_10481#0 CCCAAGTCCA--CGGCATTTCCAT--GGCTTAACAAGAATGTTAGCTTAGATGACGAATT 729 consensus_10481#1 TCTGTTCGCAAACGTTACTTACACTGAGCCTGCTAGACATTGAGTCCGAAGTAAGGTTCC 616 consensus_10481#2 GAAA--CTAATAACGAA-------TATATAGAATAGTAGCTGCTA-AGTTCCTTCCTT-- 554 consensus_10481#3 GAAA--CTAATAACGAA-------TATATAGAATAGTAGCTGCTA-AGTTCCTTCCTT-- 578 consensus_10481#4 ------------------------------------------------------------ consensus_10481#0 GATAGGCATATAAAGAA-------TCGCGATATTATTCCCCCTTCTAGTTGTAGCCTT-- 780 consensus_10481#1 AAGAAGGACGTGAGAAAAAAAGCTTTGTTGATTTATCTTCCTCTCCCCCTACTGTATTGC 676 consensus_10481#2 GAGATTCTTTTTTTT-CCCGAGAGAAACTATTTGAAGTGTCTT----CCGGTCTCACTGA 609 consensus_10481#3 GAGATTCTTTTTTTTTCCCGAGAGAAACTATTTGAAGTGTCTT----CCGGTCTCACTGA 634 consensus_10481#4 ------------------------------------------------------------ consensus_10481#0 CATTGACTCCATGTTTTCCGGGACAAAATGGATAAATGAATCT----TTCAAGT--ATGA 834 consensus_10481#1 CATTCATGCTAAAATACCCATGAGAATTTAGTGAAACCGGTACAGAGTTCGAACTAGATA 736 consensus_10481#2 TTCGAAAATTTAATATTGTAATAGGTAAAGACTTCTACTGAATTTTTAGGATTTTCCTTA 669 consensus_10481#3 TTCGAAAATTTAATATTGTAATAGGTAAAGACTTCTACTGAATTTTTAGGATTTTCCTTA 694 consensus_10481#4 ------------------------------------------------------------ consensus_10481#0 AGCCAGAG--TAAAGCGGTATGTAGTATGTCCTCCTTCAGTATGTTCTGTCAGTTTATAA 892 consensus_10481#1 AATCTGACTGACTATCCTCTTTAACTGTCGCTTTATCCAGTAGTCTAGACGACTCTACTT 796 consensus_10481#2 ACAAAAAGCTCAGT-GATTGACTACCGCTACATCTT-AAATGTACATAATTTT-GCTTTT 726 consensus_10481#3 ACANAAAGCTCAGT-GATTGACTACCGCTACATCTT-AAATGTACATAANNTTTGCTTTT 752 consensus_10481#4 ------------------------------------------------------------ consensus_10481#0 CTGGAAGGCGGAGG-CATAAATGCCAACTTAGCTGC-AATTTTGGATGGTAATGGAGGAC 950 consensus_10481#1 CCGTATCTCCTACTTCAGAAACATTTTGTGAACAATTAGAATTCAACAGTAATCGAGG-T 855 consensus_10481#2 GATGTTAGATTTTGTTT-CAATGTTTCCTATTTCATAATGAAACGGTATTATTTTCAT-A 784 consensus_10481#3 GATGT-AGATTTTGTTN-CAATGTTTCCCTATTCATA-TGAAACGGNATA--TTTTAT-A 806 consensus_10481#4 ------------------------------------------------------------ consensus_10481#0 AACACAATAGTTGACAAATACTGTTGCAGCTTAAATCATTCATCAGTCTG-CAATAAT-G 1008 consensus_10481#1 AATTCCACAGTAACCAACTTAGTTAGGCGCAAAAGACACTGAGGGAAAAGTTCGCAGTCA 915 consensus_10481#2 ATTGTATATACATATTCAATAAAATGTGAACTTCTATGAATAATTATTATGNCGTTAATA 844 consensus_10481#3 AT-GGATAT-CATATTCAATAAAGTG---------------------------------- 830 consensus_10481#4 ------------------------------------------------------------ consensus_10481#0 TTGCAAACAAAGCTTTCACTGGGAAACGAAGATGTGCCAAAAGAGCCTTGCGTTCAGTGG 1068 consensus_10481#1 TTGTGTCCGGCTCCATCAATGAAAA--GAGGATCCAACAATAGA---TTACCTGCTACAG 970 consensus_10481#2 CTATTAGATTATTTCAGTTAATTAAAGTTGTATCA------------------------- 879 consensus_10481#3 ------------------------------------------------------------ consensus_10481#4 ------------------------------------------------------------ consensus_10481#0 TTTTTTCAACATCATTGTCATGAGGAGGAGTTCATAGTTAAATAGAATGATAT------- 1121 consensus_10481#1 CAGAACATATACGGTAACCGTGAGTAAC-GTTCACAACCTCATCACGTGTCCCATGAATC 1029 consensus_10481#2 ------------------------- consensus_10481#3 ------------------------- consensus_10481#4 ------------------------- consensus_10481#0 ------------------------- consensus_10481#1 ACTAATGTAGGTGAGATAATTTTCG 1054 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||