These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 592 fasta sequence [TATTGTGATGGACGGGGGGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG-AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGACCCACCAATGGCATTCAATACCATGTACAAACTAAAGAAAGTCGAATTCCCTCTTGGTAATCTTACTGATCCTGTCACAGGACTACGTTCCGAAGGTCCTGAGTATTCAATTGAAACACTGAGGTCTATTCTGAATCGAGAAAAGTGTTGAAAACCAAATTCATTTCTACTTTGTTTTGCGATAAATGATCACTTTTTTCAATATACGA] [-] EMBL BG930796 [TATTGTGATGGACGGGGGTTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGAg ] [+] EMBL CD083737 [ aGGGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGACCCACCAATGGCATTCAATACCATGTACAAACTAAAGAAAGTCGAATTCCCTCTTGGTAATCTTACTGATCCTGTCACAGGACTACGTTCCGAAGGTCCTGAGTATTCAATTGAAACACTGAGGTCTTTTCTGAATCGAGAAAAGTGTTGAAAACCAAATTCATTTCTACTTTG ] [-] EMBL BG931052 [ GGATCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTT CCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTCTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGAC ] [+] EMBL BG930408 [ GGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGGAAAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGA ] [+] EMBL BG930833 [ GTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAGCATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGA ] [+] EMBL BG930498 [ tTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGACCCCCCAtctat ] [-] EMBL BG930826 [ TCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGAC ] [-] EMBL BG930391 [ TCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGATCCCCCGTCGGCATT ] [-] EMBL BG931094 [ TCCGATATTGGTAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGAC ] [-] EMBL BG930993 [ TTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATCACGGGG ATAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAACCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGATTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGAg ] [-] EMBL BG930736 [ GCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGA AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAAAAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGAg ] [-] EMBL BG930148 [ CTTGAAGGTATTTCCCCCCAGCATGCTAGTATAACGGGA AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGAC ] [-] EMBL BG931279 [ AAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACGAAGTTTAACATGGTCATTCCCAGATATTGTAAAGGTCCGCTCGCACAAGCTCTGTTCGCATCGTTTCCTGATGAAGTATTTTTATCAGACAGCAACATACGGGGTTCATACACAAGATTATTTGGTCAACGCTGGAGACATCGTGCTTATTGAAAAAGCTGAC ] [-] EMBL CD170602 [ TGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGACCCACCAATGGCATTCAATACCATGTACAAACTAAAGAAAGTCGAATTCCCTCTTGGTAATCTTACTGATCCTGTCACAGGACTACGTTCCGAAGGTCCTGAGTATTCAATTGAAACACTGAGGTCTATTCTGAATCGAGAAAAGTGTTGAAAACCAAATTCATTTCTACCTTGTTTTGCGATAAATGATCACTTTTTTCAATATACGA] [-] EMBL CD170498 [ TGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGACCCACCAATGGCATTCAATACCATGTACAAACTAAAGAAAGTCGAATTCCCTCTTGGTAATCTTACTGATCCTGTCACAGGACTACGTTCCGAAGGTCCTGAGTATTCAATTGAAACACTGAGGTCTATTCTGAATCGAGAAAAGTGTTGAAAACCAAATTCATTTCTACTTTGTTTTGCGATAAATGATCACTTTTTTCAATATACGA] consensusID : consensus_10501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence [GCGGCCAAGATTCGGCACGAGGGTGCGACGCTGAAGAGACCTTGAGAATGGACAACCACTGAGGGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGNCACATACTGGGTTCATACACAA] [+] EMBL CD077433 [GCGGCCAAGATTCGGCACGAGGGTGCGACGCTGAAGAGACCTTGAGAATGGACAACCACTGAGGGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGNCACATACTGGGTTCATACACAA] consensusID : consensus_10501#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 230 fasta sequence [GTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAACGCTGAGCTTGGAGGTATTTCCCCAGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTGCCAAACGATTATGCAATTGGGAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCAGATATTGTAAAGGTCGCTTCTGACAACGACTGTTTGATGTTCTGAGAGT] [+] EMBL AA566160 [GTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAACGCTGAGCTTGGAGGTATTTCCCCAGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTGCCAAACGATTATGCAATTGGGAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCAGATATTGTAAAGGTCGCTTCTGACAACGACTGTTTGATGTTCTGAGAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10501#1 GCGGCCAAGATTCGGCACGAGGGTGCGACGCTGAAGAGACCTTGAGAATGGACAACCACT 60 consensus_10501#2 ------------------------------------------------------------ consensus_10501#0 ----------------------------------------------TATTGTGATGGACG 14 consensus_10501#1 GAGGGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATT 120 consensus_10501#2 --------------------------------------------GTGGCTTAAAAATATT 16 consensus_10501#0 GGGGGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATT 74 **************** consensus_10501#1 CAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGG 180 consensus_10501#2 CAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAACGCTGAGCTTGGAGG 76 consensus_10501#0 CAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGG 134 ********************************************* ************* consensus_10501#1 TATTTCCCCCCAGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTGCCTTTCGATTATGC 240 consensus_10501#2 TATTTCCCC--AGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTGCCAAACGATTATGC 134 consensus_10501#0 TATTTCCCCCCAGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTGCCTTTCGATTATGC 194 ********* ************************************* ********* consensus_10501#1 AATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAA 300 consensus_10501#2 AATTGGG-AAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCC-AGATATTGTAAA 192 consensus_10501#0 AATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAA 254 ******* *************************************** ************ consensus_10501#1 GGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGN 360 consensus_10501#2 GGTCGCTTCTGACAACGACTGTTTGA----TGTTCTGA--GAGT---------------- 230 consensus_10501#0 GGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGC 314 **** * **** ******** * * **** *** consensus_10501#1 CACATACTGGGTTCATACACAA-------------------------------------- 382 consensus_10501#2 ------------------------------------------------------------ consensus_10501#0 AACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGA 374 consensus_10501#1 ------------------------------------------------------------ consensus_10501#2 ------------------------------------------------------------ consensus_10501#0 AAAAGCTGACCCACCAATGGCATTCAATACCATGTACAAACTAAAGAAAGTCGAATTCCC 434 consensus_10501#1 ------------------------------------------------------------ consensus_10501#2 ------------------------------------------------------------ consensus_10501#0 TCTTGGTAATCTTACTGATCCTGTCACAGGACTACGTTCCGAAGGTCCTGAGTATTCAAT 494 consensus_10501#1 ------------------------------------------------------------ consensus_10501#2 ------------------------------------------------------------ consensus_10501#0 TGAAACACTGAGGTCTATTCTGAATCGAGAAAAGTGTTGAAAACCAAATTCATTTCTACT 554 consensus_10501#1 -------------------------------------- consensus_10501#2 -------------------------------------- consensus_10501#0 TTGTTTTGCGATAAATGATCACTTTTTTCAATATACGA 592 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||