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Schistosoma mansoni
cluster # 10520 cluster # 10520       Sequences # 17       consensus # 9


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10520#0 length = 868 sequences # 5  
consensus_10520#1 length = 561 sequences # 1  
consensus_10520#2 length = 560 sequences # 1  
consensus_10520#3 length = 473 sequences # 2  
consensus_10520#4 length = 398 sequences # 2  
consensus_10520#5 length = 323 sequences # 1  
consensus_10520#6 length = 255 sequences # 2  
consensus_10520#7 length = 251 sequences # 2  
consensus_10520#8 length = 91 sequences # 1  

consensusID : consensus_10520#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 868
fasta sequence
                              [CAAGTGTAACTGAAATTTCCTTACATGACGTTTCTTTAGCCGCAGTTTCAGATGTAAATGTAACAGAATTAAAACCTATAGACGCCAATGTATTAACACAGGAAGAAAAACAAAAAATTGCCTGAAAAAGAATATCAAATTCAATCAAATGATATTACGGGTGAAGAAACATCTGACAAACAAATGAAAAATGAAATTCAAGCCGAACAAACTGAAATGACAGAGCAGGTAACGGAAGTCGGAGACACAGTGACCGAGAAGACCGCCGAGGTCATTGTTC-AAGAAGGGAAGGAGTCTGTGTCACAGACCATGGAGTGGGTTTCAGAGGGTGTTGGTGAATTGGAGGAATCCGACCGTCAGGATAGTGCCCGTGTTGTGGAGCAGCCGAGTGAAGTAAGTGTGGCCGTTTCTGAAAAGCCCACGGAACTGGAGGCACGTGAGGAGGTCTCTGTGAAGGAGGCCGTGGTCGACAAGACCCCAGTGGAATCGGAGACAGTCCCGGTCTCAATTGTGAGCAAAGGAGTGGTAGAGGTAACGGACGTGAAGAGCACAGTTGGAGTGGCAGAGGAATCTGGTAGTGTGGCGGAACAGGAGACTTTGGTTGTGGAGCAGGTGGCGGAGTCCAAGGAGACTGTGACTGTTAAGATGGAGGAGCGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGCGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACG]

[+] EMBL CD163262             [CAAGTGTAACTGAAATTTCCTTACATGACGTTTCTTTAGCCGCAGTTTCAGATGTAAATGTAACAGAATTAAAACCTATAGACGCCAATGTATTAACACAGGAAGAAAAACAAAAAATTGCCTGAAAAAGAATATCAAATTCAATCAAATGATATTACGGGTGAAGAAACATCTGACAAACAAATGAAAAATGAAATTCAAGCCGAACAAACTGAAATGACAGAGCAGGTAACGGAAGTCGGAGACACAGTGACCGAGAAGACCGCCGAGGTCATTGTTCAAAGAAGGGAAGGAGTCTGTGTCACAGACCATGGAGTGGGTTTCAGAGGGTGTTGGTGAATTGGAGGAATCCGACCGTCAGGATAGTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD163162             [CAAGTGTAACTGAAATTTCCTTACATGACGTTTCTTTAGCCGCAGTTTCAGATGTAAATGTAACAGAATTAAAACCTATAGACGCCAATGTATTAACACAGGAAGAAAAACAAAAAATTGCCTGAAAAAGAATATCAAATTCAATCAAATGATATTACGGGTGAAGAAACATCTGACAAACAAATGAAAAATGAAATTCAAGCCGAACAAACTGAAATGACAGAGCAGGTAACGGAAGTCGGAGACACAGTGACCGAGAAGACCGCCGAGGTCATTGTTC AAGAAGGGAAGGAGTCTGTGTCACAGACCATGGAGTGGGTTTCAGAGGGTGTAGGTGAATTGGAGGAATCCGACCGTCAGGATAGTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD163530             [ AAGTGTAACTGAAATTTCCTTACATGACGTTTCTTTAGCCGCAGTTTCAGATGTAAATGTAACAGAATTAAAACCTATAGACGCCAATGTATTAACACAGGAAGAAAAAC AAAAATTGCCTGAAAAAGAATATCAAATTCAATCAAATGATATTACGGGTGAAGAAACATCTGACAAACAAATGAAAAATGAAATTCAAGCCGAACAAACTGAAATGACAGAGCAGGTAACGGAAGTCGGAGACACAGTGACCGAGAAGACCGCCGAGGTCATTGTTC AAGAAGGGAAGGAGTCTGTGTCACAGACCATGGAGTGGGTTTCAGAGGGTGTTGGTGAGTTGGAGGAATCCGACCGTCAGGATAGTGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD187847             [                                                                                                                                                                       AACATCTGACAAACAAATGAAAAATGAAATTCAAGCCGAACAAACTGAAATGACAGAGCAGGTAACGGAAGTCGGAGACACAGTGACCGAGAAGACCGCCGAGGTCATTGTTC AAGAAGGGAAGGAGTCTGTGTCACAGACCATGGAGTGGGTTTCAGAGGGTGTTGGTGAATTGGAGGAATCCGACTGTCAGGATAGTGCCCGTGTTGTGGAGCAGCCGAGTGAAGTAAGTGTGGCCGTTTCTGAAAAGCCCACGGAACTGGAGGCACGTGAGGAGGTCTCTGTGAAGGAGGCCGTGGTCGACAAGACCCCAGTGGAATCGGAGACAGTCCCGGTCTCAATTGTGAGCAAAGGAGTGGTAGAGGTAACGGACGTGAAGAGCACAGTTGGAGTGGCAGAGGAATCTGGTAGTGTGGCGGAACAGGAGA                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD071112             [                                                                                                                                                                                                                                                                                                                                                                                CCCGTGTTGTGGAGCAGCCGAGTGAAGTAAGTGTGGCCGTTTCTGAAAAGCCCACGGAACTGGAGGCACGTGAGGAGGTCTCTGTGAAGGAGGCCGTGGTCGACAAGACCCCAGTGGAATCGGAGACAGTCCCGGTCTCAATTGTGAGCAAAGGAGTGGTAGAGGTAACGGACGTGAAGAGCACAGTTGGAGTGGCAGAGGAATCTGGTAGTGTGGCGGAACAGGAGACTTTGGTTGTGGAGCAGGTGGCGGAGTCCAAGGAGACTGTGACTGTTAAGATGGAGGAGCGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGCGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACG]


>consensus_10520#0 CAAGTGTAACTGAAATTTCCTTACATGACGTTTCTTTAGCCGCAGTTTCAGATGTAAATG TAACAGAATTAAAACCTATAGACGCCAATGTATTAACACAGGAAGAAAAACAAAAAATTG CCTGAAAAAGAATATCAAATTCAATCAAATGATATTACGGGTGAAGAAACATCTGACAAA CAAATGAAAAATGAAATTCAAGCCGAACAAACTGAAATGACAGAGCAGGTAACGGAAGTC GGAGACACAGTGACCGAGAAGACCGCCGAGGTCATTGTTCAAGAAGGGAAGGAGTCTGTG TCACAGACCATGGAGTGGGTTTCAGAGGGTGTTGGTGAATTGGAGGAATCCGACCGTCAG GATAGTGCCCGTGTTGTGGAGCAGCCGAGTGAAGTAAGTGTGGCCGTTTCTGAAAAGCCC ACGGAACTGGAGGCACGTGAGGAGGTCTCTGTGAAGGAGGCCGTGGTCGACAAGACCCCA GTGGAATCGGAGACAGTCCCGGTCTCAATTGTGAGCAAAGGAGTGGTAGAGGTAACGGAC GTGAAGAGCACAGTTGGAGTGGCAGAGGAATCTGGTAGTGTGGCGGAACAGGAGACTTTG GTTGTGGAGCAGGTGGCGGAGTCCAAGGAGACTGTGACTGTTAAGATGGAGGAGCGGATT GATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAG CGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCA CGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGCGATTTGTTCTAACGTACAGAAA AGAGACAGTGAAAAACAGTGTGAATACG



consensusID : consensus_10520#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 561
fasta sequence
                              [GGTCGATGTAGTTGACTTGAGTTTTCTACTTATAAGTAATTGTGAGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGCGGACATATGACGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGCATATCGAGATTGTCTGTTGATTG]

[+] EMBL CD084671             [GGTCGATGTAGTTGACTTGAGTTTTCTACTTATAAGTAATTGTGAGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATATCGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGCGGACATATGACGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGCATATCGAGATTGTCTGTTGATTG]


>consensus_10520#1 GGTCGATGTAGTTGACTTGAGTTTTCTACTTATAAGTAATTGTGAGGTGTGTGTTGTGTG GTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTGAAT ACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGGCATAT CGAGATTGTCTGTTGATTGTGCCAGGTGTCGTGATGGTCGATGTAGTTGACTTGAGTTTT CTACTTATGAGTAATTGTGAGGTGATAGTGTGTGGATTGATGGTATTGGATCAGGAAGCG AGAGGGAGAGAGAGATTGAGTAGTTTGTGGTTCATCAGCGATTGGCAATGCGGACATATG ACGTGGTCTAGTGAAGCGATCCTATCGGTCATGCGTCACGATGATACCGGTGTGTGTTGT GTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAAGAGACAGTGAAAAACAGTGTG AATACGAAGGAATGCAACATAGAGTATATGTGAGATTGTGAACTTGATTTTGGATTGCAT ATCGAGATTGTCTGTTGATTG



consensusID : consensus_10520#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 560
fasta sequence
                              [GAAAGAAAGCATGAAATATAATGGACAGCTACGATGTAGTGAAACGATCTAGACTTCGCAGATGATCTGGATTTTCTATCACACATACAACAACAAATGCAGGAGAAGACGACAAGTGTAGCAGCAGCCTCAGTACCAGTATGTCTCAATATACACAAAGAGAAAAGCAAGATTCATCGATACAATACAACATGCACCAATCAAATCATACATGACGGAGAAGCGTTGGAAGATGTAAAAACCTTTACATATCTGGGCAGTATCAATCATGAACACGGTAGATCTCATGCAGATGTCAAGGCAAAGCAAGAGCAGCACATTTACAACTAAAGAACGTCTGCAACTCAAAACAACTGTCTGCGAACCAACACCAAGATCGAAATTCTAAATACAAATGTCAAGATAGTTCTACTGTATGGAGGTGGAAACTTGGAGAACTACGAAAGCCATCATCCAGAAGATACAAGTATTGATTAACAGGGAAATATTAGTTNTTGATTGAGATAATAAACCGATCGATCTTATACCACCGTTGAAAACCTGGAAGCACTGGATGGCCT]

[+] EMBL CD086818             [GAAAGAAAGCATGAAATATAATGGACAGCTACGATGTAGTGAAACGATCTAGACTTCGCAGATGATCTGGATTTTCTATCACACATACAACAACAAATGCAGGAGAAGACGACAAGTGTAGCAGCAGCCTCAGTACCAGTATGTCTCAATATACACAAAGAGAAAAGCAAGATTCATCGATACAATACAACATGCACCAATCAAATCATACATGACGGAGAAGCGTTGGAAGATGTAAAAACCTTTACATATCTGGGCAGTATCAATCATGAACACGGTAGATCTCATGCAGATGTCAAGGCAAAGCAAGAGCAGCACATTTACAACTAAAGAACGTCTGCAACTCAAAACAACTGTCTGCGAACCAACACCAAGATCGAAATTCTAAATACAAATGTCAAGATAGTTCTACTGTATGGAGGTGGAAACTTGGAGAACTACGAAAGCCATCATCCAGAAGATACAAGTATTGATTAACAGGGAAATATTAGTTNTTGATTGAGATAATAAACCGATCGATCTTATACCACCGTTGAAAACCTGGAAGCACTGGATGGCCT]


>consensus_10520#2 GAAAGAAAGCATGAAATATAATGGACAGCTACGATGTAGTGAAACGATCTAGACTTCGCA GATGATCTGGATTTTCTATCACACATACAACAACAAATGCAGGAGAAGACGACAAGTGTA GCAGCAGCCTCAGTACCAGTATGTCTCAATATACACAAAGAGAAAAGCAAGATTCATCGA TACAATACAACATGCACCAATCAAATCATACATGACGGAGAAGCGTTGGAAGATGTAAAA ACCTTTACATATCTGGGCAGTATCAATCATGAACACGGTAGATCTCATGCAGATGTCAAG GCAAAGCAAGAGCAGCACATTTACAACTAAAGAACGTCTGCAACTCAAAACAACTGTCTG CGAACCAACACCAAGATCGAAATTCTAAATACAAATGTCAAGATAGTTCTACTGTATGGA GGTGGAAACTTGGAGAACTACGAAAGCCATCATCCAGAAGATACAAGTATTGATTAACAG GGAAATATTAGTTNTTGATTGAGATAATAAACCGATCGATCTTATACCACCGTTGAAAAC CTGGAAGCACTGGATGGCCT



consensusID : consensus_10520#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 473
fasta sequence
                              [TTAAGACGAATATTAGTACAGATCTCGGATTTACAGTCTGATTCTGTTAGAAGCTCAGAAACCTCAGCAATGTCTACTTCTGCCGAGTCATCAGTTGGATTCTGTAGTTTTTTAAAATCATTTCCTTTGCTCTGACAATTGAAAGCATTAAGTGCAGGAGGACTGAACAGACAATGGATTTGGCACTGATGAGCCTGAAACTGATTGCGATAGACTGCATTCTTTACTTTTGGTTCAAAATAAATCATGTAGGCAGTGAGACCATCACCTACCATTACCAAAGTAGCCCATAAACGACGCCATTTAGAGAATCCAGATGGTCGACACGTAGAGGATGGATTGTAAAACATTTGTTTTGTAGCTGTTGATCCTGAGACAATCACTGAAGAACCAGATAGAGAGGAATTAGAAGCATGCACTGATGATGTAAACATAGGACTATTTGAACAAACTGTGTCAAAACTTTGGTTGGT]

[+] EMBL CD171058             [TTAAGACGAATATTAGTACAGATCTCGGATTTACAGTCTGATTCTGTTAGAAGCTCAGAAACCTCAGCAATGTCTACTTCTGCCGAGTCATCAGTTGGATTCTGTAGTTTTTTAAAATCATTTCCTTTGCTCTGACAATTGAAAGCATTAAGTGCAGGAGGACTGAACAGACAATGGATTTGGCACTGATGAGCCTGAAACTGATTGCGATAGACTGCATTCTTTACTTTTGGTTCAAAATAAATCATGTAGGCAGTGAGACCATCACCTACCATTACCAAAGTAGCCCATAAACGACGCCATTTAGAGAATCCAGATGGTCGACACGTAGAGGATGGATTGTAAAACATTTGTTTTGTAG                                                                                                                ]
[-] EMBL CD130182             [                                                                                                                                                                     AACAGACAATGGATTTGGCACTGATGAGCCTGAAACTGATTGCGATAGACTGCATTCTTNACTTNTGGTTCAAAATAAATCATGTAGGCAGTGAGACCATCACCTACCATTACCAAAGTAGCCCATAAACGACGCCATTTAGAGAATCCAGATGGTCGACACGTAGAGGATGGATTGTAAAACATTTGTTTTGTAGCTGTTGATCCTGAGACAATCACTGAAGAACCAGATAGAGAGGAATTAGAAGCATGCACTGATGATGTAAACATAGGACTATTTGAACAAACTGTGTCAAAACTTTGGTTGGT]


>consensus_10520#3 TTAAGACGAATATTAGTACAGATCTCGGATTTACAGTCTGATTCTGTTAGAAGCTCAGAA ACCTCAGCAATGTCTACTTCTGCCGAGTCATCAGTTGGATTCTGTAGTTTTTTAAAATCA TTTCCTTTGCTCTGACAATTGAAAGCATTAAGTGCAGGAGGACTGAACAGACAATGGATT TGGCACTGATGAGCCTGAAACTGATTGCGATAGACTGCATTCTTTACTTTTGGTTCAAAA TAAATCATGTAGGCAGTGAGACCATCACCTACCATTACCAAAGTAGCCCATAAACGACGC CATTTAGAGAATCCAGATGGTCGACACGTAGAGGATGGATTGTAAAACATTTGTTTTGTA GCTGTTGATCCTGAGACAATCACTGAAGAACCAGATAGAGAGGAATTAGAAGCATGCACT GATGATGTAAACATAGGACTATTTGAACAAACTGTGTCAAAACTTTGGTTGGT



consensusID : consensus_10520#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 398
fasta sequence
                              [CGGGATGACACCCAGTACAACAACACCAACAATTTGAAAAACGAAACAGTCACTCACACTCCTCTTCTTAGTAGCCATTGGTTACGCCACCGCCTACACCACATCACATGACTATTCGGGTGAGTACGGTGGCGGTTGCTATGGTAGCGATTGTGATAGCGGTTATGGCCATGGTGGAGGTTGCAGTGGTGGAGATTGTGGTAATTACGGTGGTGGCTATGGTGGTGATTGCAATGGCGGAGATTGTGGTAATTACGGCGGTGGCTATGGTGGTGGGAATGGTGGAGGTTGCAGTGGTGGATCATTCTAATTTGTTTGTGTCACACTCTCCACTGTCCTATTTTTCTACACACCTCTCAATTCAACTCACTGTAATATAGTCGTGTTTGAATTCGAGA]

[+] EMBL CD129734             [CGGGATGACACCCAGTACAACAACACCAACAATTTGAAAAACGAAACAGTCACTCACACTCCTCTTCTTAGTAGCCATTGGTTACGCCACCGCCTACACCACATCACATGACTATTCGGGTGAGTACGGTGGCGGTTGCTATGGTAGCGATTGTGATAGCGGTTATGGCCATGGTGGAGGTTGCAGTGGTGGAGATTGTGGTAATTACGGTGGTGGCTATGGTGGTGATTGCAATGGCGGAGATTGTGGTAATTAC                                                                                                                                              ]
[+] EMBL CD127233             [                                                                                                                                                                           TGGTGGAGGTTGCAGAGATGGAGATTGTGGTAATTACGGTGGTGGCTATGGTGGTGATTGCAATGGTGGAGATTGTGGTAATTACGGCGGTGGCTATGGTGGTGGGAATGGTGGAGGTTGCAGTGGTGGATCATTCTAATTTGTTTGTGTCACACTCTCCACTGTCCTATTTTTCTACACACCTCTCAATTCAACTCACTGTAATATAGTCGTGTTTGAATTCGAGA]


>consensus_10520#4 CGGGATGACACCCAGTACAACAACACCAACAATTTGAAAAACGAAACAGTCACTCACACT CCTCTTCTTAGTAGCCATTGGTTACGCCACCGCCTACACCACATCACATGACTATTCGGG TGAGTACGGTGGCGGTTGCTATGGTAGCGATTGTGATAGCGGTTATGGCCATGGTGGAGG TTGCAGTGGTGGAGATTGTGGTAATTACGGTGGTGGCTATGGTGGTGATTGCAATGGCGG AGATTGTGGTAATTACGGCGGTGGCTATGGTGGTGGGAATGGTGGAGGTTGCAGTGGTGG ATCATTCTAATTTGTTTGTGTCACACTCTCCACTGTCCTATTTTTCTACACACCTCTCAA TTCAACTCACTGTAATATAGTCGTGTTTGAATTCGAGA



consensusID : consensus_10520#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence
                              [ATAGCTACCTAACTACTACGAATATTTAGCATTACTTAACTACCCATAACTTAGAAGCGTTTAAATACTCAACATGACTGGGAACAGGACCAGTCATCACTTTCGCTCGATGCCGCGCGCTGTGGAATTCAGCACGACANGATATTGCAGTTAGAATGGTCAACCGTACAGAGGCGTGCACAACTTTGTGAAGCACCTTGNTTGTGATAAACGTGGAAAAACTTAGTCCTCCAAGGAGTTAATTGGAATTTTTGCACACCGGTTACACTGTCCATTCAAAGGAAGATCTAGTTGAGAAGTTTATCAGTCGTGGCACGACAAAG]

[+] EMBL AA999279             [ATAGCTACCTAACTACTACGAATATTTAGCATTACTTAACTACCCATAACTTAGAAGCGTTTAAATACTCAACATGACTGGGAACAGGACCAGTCATCACTTTCGCTCGATGCCGCGCGCTGTGGAATTCAGCACGACANGATATTGCAGTTAGAATGGTCAACCGTACAGAGGCGTGCACAACTTTGTGAAGCACCTTGNTTGTGATAAACGTGGAAAAACTTAGTCCTCCAAGGAGTTAATTGGAATTTTTGCACACCGGTTACACTGTCCATTCAAAGGAAGATCTAGTTGAGAAGTTTATCAGTCGTGGCACGACAAAG]


>consensus_10520#5 ATAGCTACCTAACTACTACGAATATTTAGCATTACTTAACTACCCATAACTTAGAAGCGT TTAAATACTCAACATGACTGGGAACAGGACCAGTCATCACTTTCGCTCGATGCCGCGCGC TGTGGAATTCAGCACGACANGATATTGCAGTTAGAATGGTCAACCGTACAGAGGCGTGCA CAACTTTGTGAAGCACCTTGNTTGTGATAAACGTGGAAAAACTTAGTCCTCCAAGGAGTT AATTGGAATTTTTGCACACCGGTTACACTGTCCATTCAAAGGAAGATCTAGTTGAGAAGT TTATCAGTCGTGGCACGACAAAG



consensusID : consensus_10520#6
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 255
fasta sequence
                              [ACCACGTCCGTTGTGAGATATCAACTCACTGAAGACAATTGGTGAATGATTGCTCAACTTCGTGGATCAGTTGAAGTTAGACATTAACTGTTTCAAATAGTTGCTGCTGGAAGGCTAGCATCTGTTGTTGCCGGTGCTCTAATATTATCAGCGCCTGTTCTACAGAAATCGTCATTTTTTTTACTGATAATAATAATAATTCCAAAAATTCGCCGGCAATTACAGCTTGTTTGATTCCAAAATCACGTCTCGATT]

[+] EMBL CD165129             [ACCACGTCCGTTGTGAGATATCAACTCACTGAAGACAATTGGTGAATGATTGCTCAACTTCGTGGATCAGTTGAAGTTAGACATTAACTGTTTCAAATAGTTGCTGCTGGAAGGCTAGCATCTGTTGTTGCCGGTGCTCTAATATTATCAGCGCCTGTTCTACAGAAATCGTCATTTTTTTTACTGATAATAATAATAATTCCAAAAATTCGCCGGCAATTACAGCTTGTTTGATTCCAAAATCACGTCTCGATT]
[+] EMBL CD165119             [ACCACGTCCGTTGTGAGATATCAACTCACTGAAGACAATTGGTGAATGATTGCTCAACTTCGTGGATCAGTTGAAGTTAGACATTAACTGTTTCAAATAGTTGCTGCTGGAAGGCTAGCATCTGTTGTTGCCGGTGCTCTAATATTATCAGCGCCTGTTCTACAGAAATCGTCATTTTTTTTACTGATAATAATAATAATTCCAAAAATTCGCCGGCAATTACAGCTTGTTTGATTCCAAAATCACGTCTCGATT]


>consensus_10520#6 ACCACGTCCGTTGTGAGATATCAACTCACTGAAGACAATTGGTGAATGATTGCTCAACTT CGTGGATCAGTTGAAGTTAGACATTAACTGTTTCAAATAGTTGCTGCTGGAAGGCTAGCA TCTGTTGTTGCCGGTGCTCTAATATTATCAGCGCCTGTTCTACAGAAATCGTCATTTTTT TTACTGATAATAATAATAATTCCAAAAATTCGCCGGCAATTACAGCTTGTTTGATTCCAA AATCACGTCTCGATT



consensusID : consensus_10520#7
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 251
fasta sequence
                              [CCCACCATTTCCAGAATTCATTTTCCACCAGTCGCCATAACCGCTATCACAATCGCTACCATAGCAACCGCCACCGTACCCACCCGAATAGTCATGTGATGTGGTGTGGGCGGTGGCGTAACC-AT-GCTACTAAGAAGACGAGTGTGAGTGACTGTTTCATTTTTCAAATTGTTGGTGTTGTTGTACTGGGTGTGATGATCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGATGATAGTG]

[-] EMBL CD128658             [CCCACCATTTCCAGAATTCATTTTCCACCAGTCGCCATAACCGCTATCACAATCGCTACCATAGCAACCGCCACCGTACCCACCCGAATAGTCATGTGATGTGGTGTGGGCGGTGGCGTAACC AT GCTACTAAGAAGACGAGTGTGAGTGACTGTTTCA                                                                                            ]
[+] EMBL CD128662             [                               TCGCCATAACCGCTATCACAATCGCTACCATAGCAACCGCCACCGTACCCACCCGAATAGTCATGTGATGTGGTGTGGGCGGTGGCGTAACCAATGGCTACTAAGAAGACGAGTGTGAGTGACTGTTTCATTTTTCAAATTGTTGGTGTTGTTGTACTGGGTGTGATGATCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGATGATAGTG]


>consensus_10520#7 CCCACCATTTCCAGAATTCATTTTCCACCAGTCGCCATAACCGCTATCACAATCGCTACC ATAGCAACCGCCACCGTACCCACCCGAATAGTCATGTGATGTGGTGTGGGCGGTGGCGTA ACCATGCTACTAAGAAGACGAGTGTGAGTGACTGTTTCATTTTTCAAATTGTTGGTGTTG TTGTACTGGGTGTGATGATCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTG AGATGATAGTG



consensusID : consensus_10520#8
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 91
fasta sequence
                              [ACTGTTCCTGTTCCAGTCATGTTGATTATTTAAATGCTTCTAAGTTATGGGTAGNTAAGTAATGNTAAATAATCGTAGTAGTTAGGTAGCT]

[+] EMBL SM660                [ACTGTTCCTGTTCCAGTCATGTTGATTATTTAAATGCTTCTAAGTTATGGGTAGNTAAGTAATGNTAAATAATCGTAGTAGTTAGGTAGCT]


>consensus_10520#8 ACTGTTCCTGTTCCAGTCATGTTGATTATTTAAATGCTTCTAAGTTATGGGTAGNTAAGT AATGNTAAATAATCGTAGTAGTTAGGTAGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10520#0      CAAGTGTAACTGAAATTTCCTTACATGACGTTTCTTTAGCCGCAGTTTCAGATGTAAATG 60
consensus_10520#1      ------------------------------------------------------------
consensus_10520#8      ------------------------------------------------------------
consensus_10520#7      ------------------------------------------------------------
consensus_10520#2      ------------------------------------------------------------
consensus_10520#4      ------------------------------------------------------------
consensus_10520#3      ------------------------------------------------------------
consensus_10520#5      ------------------------------------------------------------
consensus_10520#6      ------------------------------------------------------------
                                                                                   

consensus_10520#0      TAACAGAATTAAAACCTATAGACGCCAATGTATTAACACAGGAAGAAAAACAAAAAATTG 120
consensus_10520#1      ------------------------------------------------------------
consensus_10520#8      ------------------------------------------------------------
consensus_10520#7      ------------------------------------------------------------
consensus_10520#2      ------------------------------------------------------------
consensus_10520#4      ------------------------------------------------------------
consensus_10520#3      ------------------------------------------------------------
consensus_10520#5      ------------------------------------------------------------
consensus_10520#6      ------------------------------------------------------------
                                                                                   

consensus_10520#0      CCTGAAAAAGAATATCAAATTCAATCAAATGATATTACGGGTGAAGAAACATCTGACAAA 180
consensus_10520#1      ------------------------------------------------------------
consensus_10520#8      ------------------------------------------------------------
consensus_10520#7      ------------------------------------------------------------
consensus_10520#2      ------------------------------------------------------------
consensus_10520#4      ------------------------------------------------------------
consensus_10520#3      ------------------------------------------------------------
consensus_10520#5      ------------------------------------------------------------
consensus_10520#6      ------------------------------------------------------------
                                                                                   

consensus_10520#0      CAAATGAAAAATGAAATTCAAGCCGAACAAACTGAAATGACAGAGCAGGTAACGGAAGTC 240
consensus_10520#1      ------------------------------------------------------------
consensus_10520#8      ------------------------------------------------------------
consensus_10520#7      ------------------------------------------------------------
consensus_10520#2      ------------------------------------------------------------
consensus_10520#4      ------------------------------------------------------------
consensus_10520#3      ------------------------------------------------------------
consensus_10520#5      ------------------------------------------------------------
consensus_10520#6      ------------------------------------------------------------
                                                                                   

consensus_10520#0      GGAGACACAGTGACCGAGAAGACCGCCGAGGTCATTGTTCAAGAAGGGAAGGAGTCTGTG 300
consensus_10520#1      ------------------------------------------------------------
consensus_10520#8      ------------------------------------------------------------
consensus_10520#7      ------------------------------------------------------------
consensus_10520#2      ------------------------------------------------------------
consensus_10520#4      ------------------------------------------------------------
consensus_10520#3      ------------------------------------------------------------
consensus_10520#5      ------------------------------------------------------------
consensus_10520#6      ------------------------------------------------------------
                                                                                   

consensus_10520#0      TCACAGACCATGGAGTGGGTTTCAGAGGGTGTTGGTGAATTGGAGGAATCCGACCGTCAG 360
consensus_10520#1      ------------------------------------------------------------
consensus_10520#8      ------------------------------------------------------------
consensus_10520#7      ------------------------------------------------------------
consensus_10520#2      ------------------------------------------------------------
consensus_10520#4      ------------------------------------------------------------
consensus_10520#3      ------------------------------------------------------------
consensus_10520#5      ------------------------------------------------------------
consensus_10520#6      ------------------------------------------------------------
                                                                                   

consensus_10520#0      GATAGTGCCCGTGTTGTGGAGCAGCCGAGTGAAGTAAGTGTGGCCGTTTCTGAAAAGCCC 420
consensus_10520#1      ------------------GGTCGATGTAGTTGACTTGAGTTTTCTACTTATAAGTAATT- 41
consensus_10520#8      ------------------------------------------------------------
consensus_10520#7      ------------------------------------------------------------
consensus_10520#2      ---------------GAAAGAAAGCATGAAATATAATGGACAGCTACGATGTAGTGAAAC 45
consensus_10520#4      ------------------------------------------------------------
consensus_10520#3      ------------------------------------------------------------
consensus_10520#5      ------------------------------------------------------------
consensus_10520#6      ------------------------------------------------------------
                                                                                   

consensus_10520#0      ACGGAACTGGAGGCACGTGAGGAGGTCTCTGTGAAGGAGGCCGTGGTCGACAAGACCCCA 480
consensus_10520#1      GTGAGGTGTGTGTTGTGTGGTGTTGGCTGAGTGATTTGTTCTAACGTACAGAAAA----G 97
consensus_10520#8      ------------------------------------------------------------
consensus_10520#7      ------------------------------------------------------------
consensus_10520#2      GATCTAGACTTCGCAGATGATCTGGATTTTCTATCACACATACAACAACAAATGCAGGAG 105
consensus_10520#4      ------------------------------------------------------------
consensus_10520#3      ----TTAAGACGAATATTAGTACAGATCTCGGATTTACAGTCTGATTCTGTTAGAAGCTC 56
consensus_10520#5      ------------------------------------------------------------
consensus_10520#6      ------------------------------------------------------------
                                                                                   

consensus_10520#0      GTGGAATCGGAGACAGTCCCGGTCTCAATTGTGAGCAAAGGAGTGGTAGAGGTAACGGAC 540
consensus_10520#1      AGACAGTGAAAAACAGTGT-GAATACGAAGGAATGCAACATAG-AGTATATGTGA-GATT 154
consensus_10520#8      ------------------------------------------------------------
consensus_10520#7      ------------------------------------------------------------
consensus_10520#2      AAGACGACAAGTGTAGCAGCAGCCTCAGTACCAGTATGTCTCAATATACACAAAGAGAAA 165
consensus_10520#4      -CGGGATGACACCCAGTAC-AACAACACCAACAATTTGAAAAACGAAACAGTCACTCACA 58
consensus_10520#3      AGAAACCTCAGCAATGTCTACTTCTGCCGAGTCATCAGTTGGATTCTGTAGTTTTTTAAA 116
consensus_10520#5      ------------------------------------------------------------
consensus_10520#6      ------------------------------------------------------------
                                                                                   

consensus_10520#0      GTGAAGAGCACAGTTGGAGTGGCAGAGGAATCTGGTAGTGTGGC-GGAACAGGAGACTTT 599
consensus_10520#1      GTGAACTTGATT-TTGGATTGGCATATCGAGATTGTCTGTTGAT-TGTGCCAGGTGTCGT 212
consensus_10520#8      ------------------------------------------------------------
consensus_10520#7      ------------------------------------------------------------
consensus_10520#2      AGCAAGATTCATCGATACAATACAACATGCACCAATCAAATCAT-ACATGACGGAGAAGC 224
consensus_10520#4      CTCCTCTTCTTAGTAGCCATTGGTTACGCCACCGCCTACACCAC-ATCACATGACTATTC 117
consensus_10520#3      ATCATTTCCTTTGCTCTGACAATTGAAAGCATTAAGTGCAGGAGGACTGAACAGACAATG 176
consensus_10520#5      ------------ATAGCTACCTAACTACTACGAATATTTAGCATTACTTAACTACCCATA 48
consensus_10520#6      ------------------------------------------------------------
                                                                                   

consensus_10520#0      GGTTGTGGA-GCAGGTGGC---GGAGTCCAAGGAGACTGTGACTGTTAAGATGGAG-GAG 654
consensus_10520#1      GATGGTCGATGTAGTTGACTTGAGTTTTCTACTTATGAGTAATTGTGAGGTGATAGTGTG 272
consensus_10520#8      ------------------------------------------------------------
consensus_10520#7      -----------CCCACCATTTCCAGAATTCATTTTCCACCAGTCGCCATAACCGCT-ATC 48
consensus_10520#2      GTTGGAAGATGTAAAAACCTTTACATATCTGGGCAGTATCAATCATGAACACGGTAGATC 284
consensus_10520#4      GGGTGAGTACGGTGGCGGTTGCTATGGTAGCGATTGTGATAGCGGTTATGGCCATG-GTG 176
consensus_10520#3      GATTTGGCACTGATGAGCCTGAAACTGATTGCGATAGACTGCATTCTTTACTTTTGGTTC 236
consensus_10520#5      ACTTAGAAGCGTTTAAATACTCAACATGACTGGGAACAGGACCAGTCATCACTTTCGCTC 108
consensus_10520#6      --------------------------------ACCACGTCCGTTGTGAGATATCAACTCA 28
                                                                                   

consensus_10520#0      CGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTT 714
consensus_10520#1      TGGATTGATGGTATTGGATCAGGAAGCGAGAGGGAGAGAGAGATTGAGTAGTTTGTGGTT 332
consensus_10520#8      ------------------------------------------------------------
consensus_10520#7      ACAATCGCTACCATAGCAACCGCCACCGTACCCACCCGAATAGTCATGTGATGTGGTGTG 108
consensus_10520#2      TCATGCAGATGTCAAGGCAAAGCAAGAGCAGCACATTTACAACTAAAGAACGTCTGCAAC 344
consensus_10520#4      GAGGTTGCAGTGGTGGAGATTGTGGTAATTACGGTGGTGGCTATGGTGGTGATTGCAATG 236
consensus_10520#3      AAAATAAATCATGTAGGCAGTGAGACCATCACCTACC-ATTACCAAAGTAGCCCATAAAC 295
consensus_10520#5      GATGCCGCGCGCTGTGGAATTCAGCACGACANGATATTGCAGTTAGAATGGTCAACCGTA 168
consensus_10520#6      CTGAAGACAATTGGTGAATGATTGCTCAACTTCGTGGATCAGTTGAAGTTAGACATTAAC 88
                                                                                   

consensus_10520#0      CATCAGCGATTGGCAATGTGGACATATGATGTGGTCTAGTGAAGCGATCCTATCGGTCAT 774
consensus_10520#1      CATCAGCGATTGGCAATGCGGACATATGACGTGGTCTAGTGAAGCGATCCTATCGGTCAT 392
consensus_10520#8      ------------------------------------------------------------
consensus_10520#7      GGCGGTGGCGTAACCATGCTACTAAGAAGACGAGTGTGAGTGACTGTTTCATTTTTCAAA 168
consensus_10520#2      TCAAAACAACTGTC--TGCGAACCAACACCAAGATCGAAATTCTAAATACAAATGTCAAG 402
consensus_10520#4      GCGGAGATTGTGGTAATTACGGCGGTGGCTATGGTGGTGGGAATGGTGGAGGTTGCAGTG 296
consensus_10520#3      GACGCCATTTAGAGAATCCAGATGGTCGACACGTAGAGGATGGATTGTAAAACATTTGTT 355
consensus_10520#5      CAGAGGCGTGCA-CAACTTTGTGAAGCACCTTGNTTGTGATAAACGTGGAAAAACTTAGT 227
consensus_10520#6      TGTTTCAAATAGTTGCTGCTGGAAGGCTAGCATCTGTTGTTGCCGGTGCTCTAATATTAT 148
                                                                                   

consensus_10520#0      GCGTCACGATGATACCGGTGTGTGTTGTG-TGGTGTTGGCTGAGC----GATTTGTTCTA 829
consensus_10520#1      GCGTCACGATGATACCGGTGTGTGTTGTG-TGGTGTTGGCTGAGT----GATTTGTTCTA 447
consensus_10520#8      --------ACTGTTCCTGTTCCAGTCATG-TTG-ATTATTTAAAT----GCTTCTAAGTT 46
consensus_10520#7      TTGTTGGTGTTGTTGTACTGGGTGTGATGATCGATGTAGTTGACTTGA-GTTTTCTACTT 227
consensus_10520#2      ATAGTTCTACTGTATGGAGGTGGAAACTTGGAGAACTACGAAAGCCATCATCCAGAAGAT 462
consensus_10520#4      GTGGATCATTCTAATTTGTTTGTGTCACACTCTCCACTGTCCTAT-----TTTTCTACAC 351
consensus_10520#3      TTGTAGCTGTTGATCCTGAGACAATCACTGAAGAACCAGATAGAGAGGAATTAGAAGCAT 415
consensus_10520#5      CC---TCCAAGGAGTTAATTGGAATTTTT-GCACACCGGTTACACTGTCCATTCAAAGGA 283
consensus_10520#6      CAGCGCCTGTTCTACAGAAATCGTCATTTTTTTTACTGATAATAATAATAATTCCAAAAA 208
                                                                                   

consensus_10520#0      ACGTACAGAAAAGAGACAGTGAAAAACAGT-GTGAATACG-------------------- 868
consensus_10520#1      ACGTACAGAAAAGAGACAGTGAAAAACAGT-GTGAATACGAAGGAATGCAACATAGAGTA 506
consensus_10520#8      ATGGGTAGNTAAGTAATGNTAAATAATCGTAGTAGTTAGGTAGCT--------------- 91
consensus_10520#7      ATGAGTAATTGTGAGATGATAGTG------------------------------------ 251
consensus_10520#2      ACAAGTATTGATTAACAGGGAAATATTAGTTNTTGATTGAGATAATAAACCGATCGATCT 522
consensus_10520#4      ACCTCTCAATTCAACTCACTGTAATATAGTCGTGTTTGAATTCGAGA------------- 398
consensus_10520#3      GCACTGATGATGTAAACATAGGACTATTTGAACAAACTGTGTCAAAACTTTGGTTGGT-- 473
consensus_10520#5      AGATCTAGTTGAGAA--GTTTATCAGTCGTGGCACGACAAAG------------------ 323
consensus_10520#6      TTCGCCGGCAATTACAGCTTGTTTGATTCCAAAATCACGTCTCGATT------------- 255
                                                                                   

consensus_10520#0      -------------------------------------------------------
consensus_10520#1      TATGTGAGATTGTGAACTTGATTTTGGATTGCATATCGAGATTGTCTGTTGATTG 561
consensus_10520#8      -------------------------------------------------------
consensus_10520#7      -------------------------------------------------------
consensus_10520#2      TATACCACCGTTGAAAACCTGGAAGCACTGGATGGCCT----------------- 560
consensus_10520#4      -------------------------------------------------------
consensus_10520#3      -------------------------------------------------------
consensus_10520#5      -------------------------------------------------------
consensus_10520#6      -------------------------------------------------------
                                                                              




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)