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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10525#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1045 fasta sequence
[CAGCTGCATGGCATG----TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAGGCAAATATATTAACAAATAAATTATTGATCATATTGTAGGAAAAAACACAAAATTTGGACTCGTTCAGAAAACACATCACCAGTAATTAAATGGTTATTGATTGACTTCTCATAATAAAATACTGACTGAGGATCATTTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAGTAGTACACACGCACAGAAGAAAAAAAGGGAATCATTGGAAGTTGAGAAAAGATCAAATGAAACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGATTTAAACAAGCTAATTGAAGAACAGGTATTAAAAGATTTGATGCATTTTTTAGATAATTTTGTGCATTACTACATTCTAACAATAAATTTGAAATATATTGACTTCTTGATAATTGGGTCGTGATAGTGGTAGCAACGTTGGGATTTGACTCTTCTTGTTGTTCAAATACTTCTGTTGACTTTTTCACATGTAAACTTTTTATATTTTTAATGAATTCTTGAGAAAGGCAAACT-TGAGCTTCACCAGAGATTCGGAAGAAGCAAGCTAAGATTTGTGATAATTCTACAAAATCTATATCAGTCTTATGTATATGAACTAAAATACACTCAGAGAATTTATGTAAATATTCTAAATAAGCCGAAGTGAATTGTGCCAATGAAGAAATTGATTGAAAGTAAATTTCTTCAATCGATAACTTCTCCAATTTTTCGCCGTCGCACATTTCCCAAACATTAGTTACAGCTTCTAAAAATCGTCCATTTGGATAGATTGAGTTTAAACAATCAGATGTTTCAGTTATTTCGCACCATAATTGAACAGTTCGACTACTTAAACTCTTTGGCAATCGTTGGTCAGATTTATCATGTTTGACATGATTATAATTGTTAGGGAGTTTAGTTTTGAATTTCTTCATTAAGAATGCATATGAA-TATATGTTGGAGAAATTCCGGTGGCAGCAGTACT]
[+] EMBL AI067943 [CAGCTGCATGGCATGTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAGGCAAATATATTAACAAATAAATTATTGATCATATTGTAGGAAAAAACACAAAATTTGGACTCGTTCAGAAAACACATCACCAGTAATTAAATGGTTATTGATTGACTTCTCATAATAAAATACTGACTGAGGATCATTTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAGTAGTACACACGCACAGAAGAAAAAAAGGGAATCATTGGCAGTTGAGAAAAGATCAAATGAAACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGATTTAAACAAGCTAATTGAAGAACAGGTATTAAAAGATTTGATGCATTTTTTAGATAATTTTGTGCATTACTACATTCTAACAATAAATTTGAAATATATTGACTTCTTGATAATTGGGTCGTGATAGTGGTAGCAACGTTGGGATTTGACTCTTCTTGTTGTTCAAATACTTCTGTTGACTTTTTCACATGTAAACTT ]
[+] EMBL AI068170 [CAGCTGCATGGCATG TCTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTAGAAAGGCAAATATATTAACAAATAAATTATTGATCATATTGTAGGAAAAAACACAAAATTTGGACTCGTTCACAAAACACATCACCAGTAATTAAATGGTTATTGATTGACTTCTCATAATAACATACTGACTGACGATCATTTATCTGTGTTAAAAAGGACAAACCGTTTAACTTACTACTACACACGCACACAAGAAAAAAAGGGAATCATTGGAAGTTGAGAAAAGATCAAATGAAACCTAGATATTACTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAG ]
[+] EMBL AI067648 [CAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAGGCAAATATATTAACAAATAAATTATTGATCATATTGTAGGAAAAAACACAAAATTTGGACTCGTTCAAAAAACACATCACCAGTAATTAAATGGTTATTGATTGACTTCTCATAATAAAATACTGACTGAGGATCATTTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAGTAGTACACACGCACAGAAGAAAAAAAGGGAATCATTGGAAGTTGAGAAAAGATCAAATGAAACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAG ]
[+] EMBL AI067730 [CAGCTGCATGGCATG TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAGGCAAATATATTAACAAATAAATTATTGATCATATTGTAGGAAAAAACACAAAATTTGGACTCGTTCAGAAAACACATCACCAGTAATTAAATGGTTATTGATTGACTTCTCATAATAAAATACTGACTGAGGATCATTTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAGTAGTACACACGCACAGAAGAAAAAAAGGGAATCATTGGAAGTTGAGAAAAGATCAAATGAAACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGATTTAAACAAGCTAATTGAAGAACAGGTATTAAAAGATTTGATGCATTTTTTAGATAATTTTGTGCATTACTACATTCT ]
[+] EMBL AI068174 [CAGCTGCATGGCATG TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAGGCAAATATATTAACAAATAAATTATTGATCATATTGTAGGAAAAAACACAAAATTTGGACTCGTTCAGAGAACACATCACCAGTAATTAAATGGTTATTGATTGACTTCTCATAATAAAATACTGACTGAGGATCATTTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAGTAGTACACACGCACAGAAGAAAAAAAGGGAATCATTGGAAGTTGAGAAAAGATCAAATGAAACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGATTTAAACAAGCTAATTGAAGAACAGGTATTAAAAGATTTGATGCATTTTTTAGATAATTTTGTGCATTACTACATTC ]
[+] EMBL AI067507 [CAGCTGCATGGCATGTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAGGCAAATATATTAACAAATAAATTATTGATCATATTGTAGGAAAAAACACAAAATTTGGACTCGTTCAGAAAACACATCACCAGTAATTAAATGGTTATTGATTGACTTCCCATAATAAAATACTGACTGAGGATCATTTAACTGTGTTAAAAAGGACAAACCGTTTAACTTAGTAGTACACACGCACAGAAGAAAAAAAGGGAATCACTGGAAGTTGAGAAAAGATCAAATGAAACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGATTTAAACAAGCTAATTGAAGAACAGGTATTAAAA ]
[+] EMBL AI067653 [CAGCTGCATGGCATG TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAGGCAAATATATTAACAAATAAATTATTGATCATATTGTAGGAAAAAACACAAAATTTGGACTCGTTCAGAAAACACATCACCAGTAATTAAATGGTTATTGATTGACTTCTCATAATAAAATACTGACTGAGGATCATTTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAGTAGTACACACGCACAGAAGAAAAAAAGGGAATCATTGGAAGTTGAGAAAAGATCAAATGAAACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGATTTAAACAAGCTAATTGAAGAACAGGTATTAAAAGATTTGATGCATTTTTTAGATAATTTTGT ]
[+] EMBL AI066982 [ AATATATTAACAAATAAATTATTGATCATATTGTAGGAAAAAACACAAAATTTGGACTCGTTCAGAAAACACATCACCAGTAATTAAATGGTTATTGATTGACTTCTCATAATAAAATACTGACTGAGGATCATTTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAGTAGTACACACGCACAGAAGAAAAAAAGGGA ]
[+] EMBL SMT14614 [ TAAATNATTGATCATATTGTAGGAAAAAACACAAAATTNGGACTCGTTCAGAAAACACATCACCAGTAATTAAATGGTTATTGATTGACTTCTCATAATAAAATACTGACTGAGGNTCATTTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAGTAGTACACACGCACAGAAGAAAAAAAGGGAATCATTGGAAGTTGAGAAAAGATCAAATGAAACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGAT ]
[+] EMBL CD140721 [ atatGGGATCATTGGAAGTTGAGAAAAGATCAAATGAAACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGATTTAAACAAGCTAATTGAAGAACAGGTATTAAAAGATTTGATGCATTTTTTAGATAATTTTGTGCATTACTACATTCTAACAATAAATTTGAAATATATTGACTTCTTGATAATTGGGTCGTGATAGTGGTAGCAACGTTGGGATTTGACTCTTCTTGTTGTTCAAATACTTCTGTTGACTTTTTCACATGTAAACTTTTTATATTTTTAATGAATTCTTGAGAAAGGCAAACT TGAGCTTCACCAGAGATTCGGAAGAAGCAAGCTAAGATTTGTGATAATTCTACAAAATCTATATCAGTCTTATGTATATGAACTAAAATACA ]
[+] EMBL CD140798 [ AGAAAAGATCAAATGAAACGTAGAT TTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGATTTAAACAAGCTAATTGAAGAACAGGTATTAAAAGATTTGATGCATTTTTTAGATAATTTTGTGCATTACTACATTCTAACAATAAATTTGAAATATATTGACTTCTTGATAATTGGGTCGTGATAGTGGTAGCAACGTTGGGATTTGACTCTTCTTGTTGTTCAAATACTTCTGTTGACTTTTTCACATGTAAACTTTTTATATTTTTAATGAATTCTTGAGAAAGGCAAACT TGAGCTTCACCAGAGATTCGGAAGAAGCAAGCTAAGATTTGTGATAATTCTACAAAATCTATATCAGTCTTATGTATATGAACTAAAATACACTCAGAGAATTTATGTAAATATTCTAAATAAGCCGAAGTGAATTG ]
[+] EMBL CD190683 [ GTCGTGATAGTGGTAGCAACGTTGGGATTTGACTCTTCTTGTTGTTCAAATACTTCTGTTGACTTTTTCACATGTAAACTTTTTATATTTTTAATGAATTCTTGAGAAAGGCAAACT TGAGCTTCACCAGAGATTCGGAAGAAGCAAGCTAAGATTTGTGATAATTCTACAAAATCTATATCAGTCTTATGTATATGAACTAAAATACACTCAGAGAATTTATGTAAATATTCTAAATAAGCCGAAGTGAATTGTGCCAATGAAGAAATTGATTGAAAGTAAATTTCTTCAATCGATAACTTCTCCAATTTTTCGCCGTCGCACATTTCCCAAACATTAGTTAC ]
[-] EMBL CD190766 [ TCGTGATAGTGGTAGCAACGTTGGGATTTGACTCTTCTTGTTGTTCAAATACTTCTGTTGACTTTTTCACATGTAAACTTTTTATATTTTTAATGAATTCTTGAGAAAGGCAAACT TGAGCTTCACCAGAGATTCGGAAGAAGCAAGCTAAGATTTGTGATAATTCTACAAAATCTATATCAGTCTTATGTATATGAACTAAAATACACTCAGAGAATTTATGTAAATATTCTAAATAAGCCGAAGTGAATTGTGCCAATGAAGAAATTGATTGAAAGTAAATTTCTTCAATCGATAACTTCTCCAATTTTTCGCCGTCGCACATTTCCCAAACATTAGTTACAGCTTCTAAAAATCG ]
[-] EMBL CD140727 [ GAAAGGC AACTGTGAGCTTCACCAGAGATTCGGAAGAAGCAAGCTAAGATTTGTGATAATTCTACAAAATCTATATCAGTCTTATGTATATGAACTAAAATACACTCAGAGAATTTATGTAAATATTCTAAATAAGCCGAAGTGAATTGTGCCAATGAAGAAATTGATTGAAAGTAAATTTCTTCAATCGATAACTTCTCCAATTTTTCGCCGTCGCACATTTCCCAAACATTAGTTACAGCTTCTAAAAATCGTCCATTTGGATAGATTGAGTTTAAACAATCAGATGTTTCAGTTATTTCGCACCATAATTGAACAGTTCGACTACTTAAACTCTTTGGCAATCGTTGGTCAGATTTATCATGTTTGACATGATTATAATTGTTAGGGAGTTTAGTTTTGAATTTCTTCATTAAGAATGCATATGAA TATATGTTGGAGAAATTCCGGTGGCAGCAGTACT]
[-] EMBL CD140723 [ TCGGAAGAAGCAAGCTAAGATTTGTGATAATTCTACAAAATCTATATCAGTCTTATGTATATGAACTAAAATACACTCAGAGAATTTATGTAAATATTCTAAATAAGCCGAAGTGAATTGTGCCAATGAAGAAATTGATTGAAAGTAAATTTCTTCAATCGATAACTTCTCCAATTTTTCGCCGTCGCACATTTCCCAAACATTAGTTACAGCTTCTAAAAATCGTCCATTTGGATAGATTGAGTTTAAACAATCAGATGTTTCAGTTATTTCGCACCATAATTGAACAGTTCGACTACTTAAACTCTTTGGCAATCGTTGGTCAGATTTATCATGTTTGACATGATTATAATTGTTAGGGAGTTTAGTTTTGAATTTCTTCATTAAGAATGCATATGAA TATATGTTGGAGAAATTCCGGTGGCAGCAGTACT]
[-] EMBL CD140783 [ AAGAAGCAAGCTAAGATTTGTGATAATTCTACAAAATCTATATCAGTCTTATGTATATGAACTAAAATACACTCAGAGAATTTATGTAAATATTCTAAATAAGCCGAAGTGAATTGTGCCAATGAAGAAATTGATTGGAAGTAAATTTCTTCAATCGATAACTTCTCCAATTTTTCGCCGTCGCACATTTCCCAAACATTAGTTACAGCTTCTAAAAATCGTCCATTTGGATAGATTGAGTTTAAACAATCAGATGTTTCAGTTATTTCGCACCATAATTGAACAGTTCGACTACTTAAACTCTTTGGCAATCGTTGGTCAGATTTACCATGTTTGACATGATTATAATTGTTAGGGAGTTTAGTTTTGAATTTCTTCATTAAGAATGCATATGAATTATATGTTGGAGAAATTCCGGTGGCAGCAGTACT]
consensusID : consensus_10525#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 459 fasta sequence
[TTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAGTAGTACACACGCTCAGAAGAAAAAAAGGGAATCATTGGAAGTTGAGAAAAGATCAAATGAAACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGATTTAAACAAGCTAATTGAAGAACAGGTATTAAAAGATTTGATGCATTTTTTAGATAATTTTGTGCATTACTACATTCCAACAATAAATTTGAAATATATTGACTTCTTGATAATTGGGTCGTGATAGTGGTAGCAACGTTGGGATTTGACTCTTCTTGTTGTTCAAATACTTCTGTTGACTTTTTCACATGTAAACTTTTTATATTTTTAATGAATTCTTGAGAAAGGCAAACTTGAGCTTCACCAGAGATTCGGAAGAAGCTATTATTAATGCAGAAAATAAAGACAAAGAAATTAAATTCA]
[-] EMBL CD124562 [TTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAGTAGTACACACGCTCAGAAGAAAAAAAGGGAATCATTGGAAGTTGAGAAAAGATCAAATGAAACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGATTTAAACAAGCTAATTGAAGAACAGGTATTAAAAGATTTGATGCATTTTTTAGATAATTTTGTGCATTACTACATTCCAACAATAAATTTGAAATATATTGACTTCTTGATAATTGGGTCGTGATAGTGGTAGCAACGTTGGGATTTGACTCTTCTTGTTGTTCAAATACTTCTGTTGACTTTTTCACATGTAAACTTTTTATATTTTTAATGAATTCTTGAGAAAGGCAAACTTGAGCTTCACCAGAGATTCGGAAGAAGCTATTATTAATGCAGAAAATAAAGACAAAGAAATTAAATTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10525#0 CAGCTGCATGGCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 60
consensus_10525#1 ------------------------------------------------------------
consensus_10525#0 TAGAAAGGCAAATATATTAACAAATAAATTATTGATCATATTGTAGGAAAAAACACAAAA 120
consensus_10525#1 ------------------------------------------------------------
consensus_10525#0 TTTGGACTCGTTCAGAAAACACATCACCAGTAATTAAATGGTTATTGATTGACTTCTCAT 180
consensus_10525#1 ------------------------------------------------------------
consensus_10525#0 AATAAAATACTGACTGAGGATCATTTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAG 240
consensus_10525#1 ------------------------TTATCTGTGTTAAAAAGGACAAACCGTTTAACTTAG 36
************************************
consensus_10525#0 TAGTACACACGCACAGAAGAAAAAAAGGGAATCATTGGAAGTTGAGAAAAGATCAAATGA 300
consensus_10525#1 TAGTACACACGCTCAGAAGAAAAAAAGGGAATCATTGGAAGTTGAGAAAAGATCAAATGA 96
************ ***********************************************
consensus_10525#0 AACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGA 360
consensus_10525#1 AACGTAGATATTATTTGTCCTTAGTTTTTTTGTGTGAGCAATGTGGATGGGTACTTAAGA 156
************************************************************
consensus_10525#0 TTTAAACAAGCTAATTGAAGAACAGGTATTAAAAGATTTGATGCATTTTTTAGATAATTT 420
consensus_10525#1 TTTAAACAAGCTAATTGAAGAACAGGTATTAAAAGATTTGATGCATTTTTTAGATAATTT 216
************************************************************
consensus_10525#0 TGTGCATTACTACATTCTAACAATAAATTTGAAATATATTGACTTCTTGATAATTGGGTC 480
consensus_10525#1 TGTGCATTACTACATTCCAACAATAAATTTGAAATATATTGACTTCTTGATAATTGGGTC 276
***************** ******************************************
consensus_10525#0 GTGATAGTGGTAGCAACGTTGGGATTTGACTCTTCTTGTTGTTCAAATACTTCTGTTGAC 540
consensus_10525#1 GTGATAGTGGTAGCAACGTTGGGATTTGACTCTTCTTGTTGTTCAAATACTTCTGTTGAC 336
************************************************************
consensus_10525#0 TTTTTCACATGTAAACTTTTTATATTTTTAATGAATTCTTGAGAAAGGCAAACTTGAGCT 600
consensus_10525#1 TTTTTCACATGTAAACTTTTTATATTTTTAATGAATTCTTGAGAAAGGCAAACTTGAGCT 396
************************************************************
consensus_10525#0 TCACCAGAGATTCGGAAGAAGCAA--GCTAAGATTTGTGATAATTCTACAAAATCTATAT 658
consensus_10525#1 TCACCAGAGATTCGGAAGAAGCTATTATTAATGCAGAAAATAAAGACAAAGAAATTAAAT 456
********************** * *** **** * * ** ** **
consensus_10525#0 CAGTCTTATGTATATGAACTAAAATACACTCAGAGAATTTATGTAAATATTCTAAATAAG 718
consensus_10525#1 TCA--------------------------------------------------------- 459
consensus_10525#0 CCGAAGTGAATTGTGCCAATGAAGAAATTGATTGAAAGTAAATTTCTTCAATCGATAACT 778
consensus_10525#1 ------------------------------------------------------------
consensus_10525#0 TCTCCAATTTTTCGCCGTCGCACATTTCCCAAACATTAGTTACAGCTTCTAAAAATCGTC 838
consensus_10525#1 ------------------------------------------------------------
consensus_10525#0 CATTTGGATAGATTGAGTTTAAACAATCAGATGTTTCAGTTATTTCGCACCATAATTGAA 898
consensus_10525#1 ------------------------------------------------------------
consensus_10525#0 CAGTTCGACTACTTAAACTCTTTGGCAATCGTTGGTCAGATTTATCATGTTTGACATGAT 958
consensus_10525#1 ------------------------------------------------------------
consensus_10525#0 TATAATTGTTAGGGAGTTTAGTTTTGAATTTCTTCATTAAGAATGCATATGAATATATGT 1018
consensus_10525#1 ------------------------------------------------------------
consensus_10525#0 TGGAGAAATTCCGGTGGCAGCAGTACT 1045
consensus_10525#1 ---------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||