These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1374 fasta sequence [AGCTTGCTGNTCTCTGACTCAAAGGATAAGTCGATTTGCTACTCGCTAAGATGGTGGATGGAGATATTACGCCTGAGGATAAGGCAGATATATGTGCTATATTGGTTTTGCTTGCACCACCCTGTGAATTTAATGAAGTATTAGATGATATCCGTTGTTTCGCTGGTGATGATCATCAAATTCAAGAGAAGCTAGCAGCATCAGTAGCGCAGTATAACAAGGACCAAATGATTCATGTGAAGTTACCAAATTGCGAGTATCCGACTCTGATTACTGCATACGCAGACTTGGGAAATGGATATTTTATGTGTCCTAGGTCGCAGTTGACATTTCACTTCGACCATCTCAAGCAGACAGTCAGTGATGTTAAAAGTTTTGACAAGAGTAGCTTTGATAATATAGACTGTGATCTGGAGAGTTGGAGGCGTGCATTAGAAGATAGCGCTACTGTCTATGTAAACGAACATTTCCCTGATGGAGCTGTTGAAGTTTACGCCCTGAGGTCGAATGATGGTGCACGCTCTCTCGTTATGTGCATTGAATCTCACTTCAGTAAACATCAATCAACTGGACGATGGCGATCCGAATGGACCTTCAAGCTAGTTGGACAAAAATCGATGGAGTTTTCGATTCATGGTGTTATTAAGGTTCAGACACATTTATACGAAGAGGGGAATGTTCAATTGATTTCATCCAAAGAAGTTGATTTCATTGTCTCTGAATCTCTCCCTAGAATATTTGCCAGGGAATCAATAAAGAGAATAAAAGAAGCTGACTGTGCATATCAAATTGCCATTGGCGAGAACTTCAAAACAATGTCCGACACAACTTTCAAAGCTCTTCGGCGACAATTGCCTTTAACTCGTTCCAAACTGGATTGGAATAAAATCATCACTTATCAGATAGGTAGCGAACTATCTAGAG-CACCACCAAATTAAAATTATCAGTTGAAGTTAATTTTCTTTTCATTACACACACACACGCACTACTCCTTTTGGCCGATAAGGTAAAATTGGAGACGATTTAATATATTTTGATTTTTGGTGTACAATAAAAATCAAGGAAATTACGAATATTTTGCCTACTCTCTAATGAATTTAATATTATTGAAATATATATATGTTCCTTTTATGAATAGTTTACTAAAAATAAACTTTACCACTATAATGATCAGGAATTGTTTTCAGTTTTGATTTTTTTGCAACTCGATGATTTATCCAAGTCGTCATGTGTATTTTTTTGTTTTCCTCTTTCGTTACT-TTTGATACATCTGTATTTAAAAAAAAGAAAACATCTCTAATTGTGTATGGTAGATGGTACATTTCACCATTAATTTTATTTGTGTTGATTCGATATATACGTTATAATTAATTA] [+] EMBL CD197973 [AGCTTGCTGNTCTCTGACTCAAAGGATAAGTCGATTTGCTACTCGCTAAGATGGTGGATGGAGATATTACGCCTGAGGATAAGGCAGATATATGTGCTATATTGGTTTTGCTTGCACCACCCTGTGAATTTAATGAAGTATTAGATGATATCCGTTGTTTCGCTGGTGATGATCATCAAAT ] [+] EMBL AI975090 [ ACTCGCTAAGATGGTGGATGGAGATATTACGCCTGAGGATAAGGCAGATATATGTGCTAGATTGGTTTTGCTTGCACCACCCTGTGAATTTAATGAAGTATTAGATGATATCCGTTGTTTCGCTGGTGATGATCATCAGATTCAAGAGAAGCTAGCAGCATCAGTAGCGCAGTATAACAAGGACCAAATGATTCATGTGAAGTTACCAAATTGCGAGTATCCGACTCTGATTACTGCATACGCAGACTTGGGAAATGGATATTTTATGTGTCCTAGGTCGCAGTTGACATTTCACTTCGACCATCTCAAGCAGACAGTCAGTGATGTTAAAAGTTTTGACAAGAGTAGCTTTGATAATATAGACTGTGATCTGGAGAGTTGGAGGCGTGCATTAGAAGATAGCGCTACTGTCTATGTAAACGAACATTTCCCTGATGGAGCTGTTGAAGTTTACGCCCTGAGGTCGAATGATGGTGCACGCTCTCTCGTTATGTGCATTGAATCTCACTTCAGTAAACATCAATCAACTGGACGATGGCGATCCGAAT ] [+] EMBL CD078763 [ CGAGTATCCGACTCTGATTACTGCATACGCAGACTTGGGAAATGGATATTTTATGTGTCCTAGGTCGCAGTTGACATTTCACTTCGACCATCTCAAGCAGACAGTCAGTGATGTTAAAAGTTTTGACAAGAGTAGCTTTGATAATATAGACTGTGATCTGGAGAGTTGGAGGCGTGCATTAGAAGATAGCGCTACTGTCTATGTAAACGAACATTTCCCTGATGGAGCTGTTGAAGTTTACGCCCTGAGGTCGAATGATGGTGCACGCTCTCTCGTTATGTGCATTGAATCTCACTTCAGTAAACATCAATCAACTGGACGATGGCGATCCGAATGGACCTTCAAGCTAGTTGGACAAAAATCGATGGAGTTTTCGATTCATGGTGTTATTAAGGTTCAGACACATTTATACGAAGAGGGGAATGTTCAATTGATTTCATCCAAAGAAGTTGATTTCATTGTCTCTGAATCTCTCCCTAGAATATTTGCCAGGGAATCAATANAGAGAATAAAAGAAGCTGACTGTGCATATCANATTGCCATTGGCGAGAACTTCAAAACAATGTCCGACACAACTTTCAAAGCTCTTCGGCG ] [+] EMBL CD183550 [ TATTTTATGTGTCCTAGGTCGCAGTTGACATTTCACTTCGACCATCTCAAGCAGACAGTCAGTGATGTTAAAAGTTTTGACAAGAGTAGCTTTGATAATATAAACTGTGATCTGGAGAGTTGGAGGCGTGCATTAGAAGATAGCGCTACTGTCTATGTAAACGAACATTTCCCTGATGGAGCTGTTGAAGTTTACGCCCTGAGGTCGAATGATGGTGCACGCTCTCTCGTTATGTGCATTGAATCTCACTTCAGTAAACATCAATCAACTGGACGATGGCGATCCGAATGGACCTTCAAGCTAGTTGGACAAAAATCGATGGAGTTTTCGATTCATGGTGTTATTAAGGTTCAGACACATTTATACGAAGAGGGGAATGTTCAATTGATTTCATCCAAAAGAGTTGATTTCATTGTCTCTGAATCTCTCCC ] [+] EMBL CD116184 [ ACCATCTCGAGCAGACAGTCAGTGATGCTAAAAGTTTTGACAAGAGTAGCTTTGATAATATAGACTGTGATCTGGAGAGCTGGAGGCGTGCATTAGAAGATAGCGCTACTGTCTATGTAAACGAACATTTCCCTGATGGAGCTGTTGAAGTTTACGCCCTGAGGTCGAATGATGGTGCACGCTCTCTCGTTATGTGCATTGAATCTCACTTCAGTAAACATCAATCAACTGGACGATGGCGATCCGAATGGACCTTCAAGCTAGTTGGACAAAAATCGATGGAGTTTTCGATTCATGGTGTTATTAAGGTTCAGACACATTTATACGAAGAGGGGAATGTTCAATTGATTTCATCCAAAGAAGTTGATTTCATTGTCTCTGAATCTCTCCCTAGAATATTTGCCAGGGAATCAATANAGAGAATAAAAGAAGCTGACTGTGCATATCANATTGCCATTGGCGAGA ] [+] EMBL CD154582 [ ACCATCTCAAGCAGACAGTCAGTGATGTTAAAAGTTTTGACAAGAGTAGCTTTGATAATATAGACTGTGATCTGGAGAGTTGGAGGCGTGCATTAGAAGATAGCGCTACTGTCTATGTAAACGAACATTTCCCTGATGGAGCTGTTGAAGTTTACGCCCTGAGGTCGAATGATGGTGCACGCTCTCTCGTTATGTGCATTGAATCTCACTTCAGTAAACATCAATCAACTGGACGATGGCGATCCGAATGGACCTTCAAGCTAGTTGGACAAAAATCGATGGAGTTTTCGATTCATGGTGTTATTAAGGTTCAGACACATTTATACGAAG ] [+] EMBL CD189836 [ GGCGTGCATTAGAAGATAGCGCTACTGTCTATGTAAACGAACATTTCCCTGATGGAGCTGTTGAAGTTTACGCCCTGAGGTCGAATGATGGTGCACGCTCTCTCGTTATGTGCATTGAATCTCACTTCAGTAAACATCAATCAACTGGACGATGGCGATCCGAATGGACCTTCAAGCTAGTTGGACAAAAATCGATGGAGTTTTCGATTCATGGTGTTATTAAGGTTCAGACACATTTATACGAAGAGGGGAATGTTCAATTGATTTCATCCAGAGAAGTTGATTTCATTGTCTCTGAATCTCTCCCT ] [+] EMBL CD195023 [ GCATTAGAAGATAGCGCTACTGTCTATGTAAACGAACATTTCCCTGATGGAGCTGTTGAAGTTTACGCCCTGAGGTCGAATGATGGTGCACGCTCTCTCGTTATGTGCATTGAATCTCACTTCAGTAAACATCAATCAACTGGACGATGGCGATCCGAATGGACCTTCAAGCTAGTTGGACAAAAATCGATGGAGTTTTCGATTCATGGTGTTATTAAGGTTCAGACACATTTATACGAAGAGGGGAATGTTCAATTGATTTCATCCAAAGAAGTTGATTTCATTGTCTCTGAATCTCTCCCTAGAATATTTGCCAGGGAATCAATAAAGAGAATAAAAGAAGCTGACTGTGCATATCANATTGCCATTGGCGAGAACTTCAAAACAATGTCCGACACAACTNTCAAAGCTCTTCGGCGACAATTGCCTTTAACTCGTTCNCAACTGGATTGGAAT AAATCAT ] [+] EMBL CD153451 [ AAGTTTACGCCCTGAGGTCCAATGATGGTGCACGCTCTCTCGTTATGTGCATTGAATCTCACTTCAGTAAACATCAATCAACCGGACGATGGCGATCCGAATGGACCTTCAAGCTAGTTGGACAAAAATCGATGGAGTTTTCGATTCATGGTGTTATTAAGGTTCAGACACATTTATACGAAGAGGGGAATGCTCAATTGAT ] [+] EMBL CD141653 [ AATTGATTTCATCCAAAGAAGTTGATTTCATTGTCTCTGAATCTCTCCCTAGAATATTTGCCAGGGAATCAATAAAGAGAATAAAAGAAGCTGACTGTGCATATCAAATTGCCATTGGCGAGAACTTCAAAACAATGTCCGACACAACTTTCAAAGCTCTTCGGCGACAATTGCCTTTAACTCGTTCCAAACTGGATTGGAATAAAATCATCACTTATCAGATAGGTAGCGAACTATCTAGAGCCACCACCAAATTAAAATTATCAGNTGAAGTTAATTTTCTTTTCATTACACACACACACGCACTACTCCTTT ] [+] EMBL CD141435 [ AATTGATTTCATCCAAAGAAGTTGATTTCATTGTCTCTGAATCTCTCCCTAGAATATTTGCCAGGGAATCAATAAAGAGGATAAAAGAAGCTGACTGTGCATATCAAATTGCCATTGGCGAGAACTTCAAAACAATGTCCGACACAACTTTCAAAGCTCTTCGGCGACAATTGCCTTTAACTCGTTCCAAACTGGATTGGAATAAAATCATCACTTATCAGATAGGTAGCGAACTATCTAGAG CACCACCAAATTNAAATTATCAGTTGAAGTTAATTTTCTTTTTATTACACACACACACGCACTACTCCTTTTGGCCGATAAGGTAAAtt ] [+] EMBL CD141271 [ AATTGATTTCATCCAAAGAAGTTGATTTCATTGTCTCTGAATCTCTCCCTAGAATATTTGCCAGGGAATCAATAAAGAGAATAAAAGAAGCTGACTGTGCATATCAAATTGCCATTGGCGAGAACTTCAAAACAATGTCCGACACAACTTTCAAAGCTCTTCGGCGACAATTGCCTTTAACTCGTTCCAAACTGGATTGGAATAAAATCATCACTTATCAGATAGGTAGCGAACTATCTAGAG CACCACCAAATTAAAATTATCAGTTGAAGTTAATTTTCTTTTCATTACACACACACACGCACTACTCCTTTTGNCCGATAAGGTAAAATTGGAGACGATTTAATATATTTTGATTTTT ] [+] EMBL CD135903 [ AGCTGACTGTGCATATCAAATTGCCATTGGCGAGAACTTCAAAACAATGTCCGACACAACTTTCAAAGCTCTTCGGCGACAATTGCCTTTAACTCGTTCCAAACTGGATTGGAATAAAATCATCACTTATCAGATAGGTAGCGAACTATCTAGAG CACCACCAAATTAAAATTATCAGTTGAAGGTAATCGTCTTTGTGTTACACACACACA ] [-] EMBL CD073222 [ TGCCTTTAACTCGTTCCAAACTGGATTGGAATAAAATCATCACTTATCAGATAGGTAGCGAACTATCTAGAG CACCACCAAATTAAAATTATCAGTTGAAGTTAATTTTCTTTTCATTACACACACACACGCACTACTCCTTTTGGCCGATAAGGTAAAATTGGAGACGATTTAATATATTTTGATTTTTGGTGTACAATAAAAATCAAGGAAATTACGAATATTTTGCCTACTCTTTAATGAATTTAATATTATTGAAATATATATATGTTCCTTTTATGAATAGTTTACTAAAAATAAACTTTACCACTATAATGATCAGGAATTGTTTTCAGTTTTGATTTTTTTGCAACTCGATGATTTATCCAAGTCGTCATGTGTATTTTTTTGTTTTCCTCTTTCGTTACT TTTGATACATCTGTATTTAAAAAAAAGAAAACATCTCTAATTGTGTATGGTAGATGGTACATTTCACCATTAATTTTATTTGTGTTGATTCGATATATACGTTATAATTAATTA] [-] EMBL CD141175 [ TAAAAATCAAGGAAATTACGAATATTTTGCCTACTCTCTAATGAATTTAATATTATTGAAATATATATATGTTCCTTTTATGAATAGTTTACTAAAAATAAACTTTACCACTATAATGATCAGGAATTGTTTTCAGTTTTGATTTTTTTGCAACTCGATGA TTATCCAAGTCGTCATGTGTATTT ] [-] EMBL AA999535 [ ACTCTCTAATGAATTTAATATTATTGAAATATATATATGTTCCTTTTATGAATAGTTTACTAAAAATAAACTTTACCACTATAATGATCAGGAATTGTTTTCAGTTTTGATTTTTTTGCAACTCGATGATTTATCCAAGTCGTCATGTGTATTTTTTTGTTTTCCTCTTTCGTTACTGTTTGATACATCTGTATTTAAAAAAAGGAAAACATCTCTAATTGTGTATGGTAGATGGTACATTTCACCATTAATTTTATTTGTGTTGATTCGATATATACGTTA ] consensusID : consensus_10529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [AGCGCGCCGTTCTTGACTCTACGGCTTGTCGATTTGCTACTCGCTAAGATGGTGGATGGAGATATTACGCCTGAGGATAAGGCAGATATATGTGCTAGATTGGTTTTGCTTGCACCACCCTGTGAATTTAATGAAGTATTAGATGATATCCGTTGTTTCGCTGGTGATGATCATCAGATTCAAGAGAAGCTAGCAGCTAGCGCAGTATAACAAGGACCAAATGATTCATGTGAAGTTACCAAATTGCGAGTATCCGACTCTGATTACTGCATACGCAGACTTGGGAAATGGATATTTTATGTGTCCTAGGTCGCAGTTGACATTTCACTTCGACCATCTCAAGCAGACACTTTGATAATATAGACTGTGATCTGGAGAGTTGGAGGCGTGCATTAGAAGATAGCGCTACTGTCTATGNTAACGAACATT] [+] EMBL CD197968 [AGCGCGCCGTTCTTGACTCTACGGCTTGTCGATTTGCTACTCGCTAAGATGGTGGATGGAGATATTACGCCTGAGGATAAGGCAGATATATGTGCTAGATTGGTTTTGCTTGCACCACCCTGTGAATTTAATGAAGTATTAGATGATATCCGTTGTTTCGCTGGTGATGATCATCAGATTCAAGAGAAGCTAGCAGCTAGCGCAGTATAACAAGGACCAAATGATTCATGTGAAGTTACCAAATTGCGAGTATCCGACTCTGATTACTGCATACGCAGACTTGGGAAATGGATATTTTATGTGTCCTAGGTCGCAGTTGACATTTCACTTCGACCATCTCAAGCAGACACTTTGATAATATAGACTGTGATCTGGAGAGTTGGAGGCGTGCATTAGAAGATAGCGCTACTGTCTATGNTAACGAACATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10529#0 AGCTTGCTGNTCTCTGACTCAAAGGATAAGTCGATTTGCTACTCGCTAAGATGGTGGATG 60 consensus_10529#1 AGCGCGCCGTTCT-TGACTCTACGGCTT-GTCGATTTGCTACTCGCTAAGATGGTGGATG 58 *** ** * *** ****** * ** * ******************************* consensus_10529#0 GAGATATTACGCCTGAGGATAAGGCAGATATATGTGCTATATTGGTTTTGCTTGCACCAC 120 consensus_10529#1 GAGATATTACGCCTGAGGATAAGGCAGATATATGTGCTAGATTGGTTTTGCTTGCACCAC 118 *************************************** ******************** consensus_10529#0 CCTGTGAATTTAATGAAGTATTAGATGATATCCGTTGTTTCGCTGGTGATGATCATCAAA 180 consensus_10529#1 CCTGTGAATTTAATGAAGTATTAGATGATATCCGTTGTTTCGCTGGTGATGATCATCAGA 178 ********************************************************** * consensus_10529#0 TTCAAGAGAAGCTAGCAGCATCAGTAGCGCAGTATAACAAGGACCAAATGATTCATGTGA 240 consensus_10529#1 TTCAAGAGAAGCTAGCAGC-----TAGCGCAGTATAACAAGGACCAAATGATTCATGTGA 233 ******************* ************************************ consensus_10529#0 AGTTACCAAATTGCGAGTATCCGACTCTGATTACTGCATACGCAGACTTGGGAAATGGAT 300 consensus_10529#1 AGTTACCAAATTGCGAGTATCCGACTCTGATTACTGCATACGCAGACTTGGGAAATGGAT 293 ************************************************************ consensus_10529#0 ATTTTATGTGTCCTAGGTCGCAGTTGACATTTCACTTCGACCATCTCAAGCAGACAGTCA 360 consensus_10529#1 ATTTTATGTGTCCTAGGTCGCAGTTGACATTTCACTTCGACCATCTCAAGCAGACA---- 349 ******************************************************** consensus_10529#0 GTGATGTTAAAAGTTTTGACAAGAGTAGCTTTGATAATATAGACTGTGATCTGGAGAGTT 420 consensus_10529#1 ----------------------------CTTTGATAATATAGACTGTGATCTGGAGAGTT 381 ******************************** consensus_10529#0 GGAGGCGTGCATTAGAAGATAGCGCTACTGTCTATGTAAACGAACATTTCCCTGATGGAG 480 consensus_10529#1 GGAGGCGTGCATTAGAAGATAGCGCTACTGTCTATGNTAACGAACATT------------ 429 ************************************ ********** consensus_10529#0 CTGTTGAAGTTTACGCCCTGAGGTCGAATGATGGTGCACGCTCTCTCGTTATGTGCATTG 540 consensus_10529#1 ------------------------------------------------------------ consensus_10529#0 AATCTCACTTCAGTAAACATCAATCAACTGGACGATGGCGATCCGAATGGACCTTCAAGC 600 consensus_10529#1 ------------------------------------------------------------ consensus_10529#0 TAGTTGGACAAAAATCGATGGAGTTTTCGATTCATGGTGTTATTAAGGTTCAGACACATT 660 consensus_10529#1 ------------------------------------------------------------ consensus_10529#0 TATACGAAGAGGGGAATGTTCAATTGATTTCATCCAAAGAAGTTGATTTCATTGTCTCTG 720 consensus_10529#1 ------------------------------------------------------------ consensus_10529#0 AATCTCTCCCTAGAATATTTGCCAGGGAATCAATAAAGAGAATAAAAGAAGCTGACTGTG 780 consensus_10529#1 ------------------------------------------------------------ consensus_10529#0 CATATCAAATTGCCATTGGCGAGAACTTCAAAACAATGTCCGACACAACTTTCAAAGCTC 840 consensus_10529#1 ------------------------------------------------------------ consensus_10529#0 TTCGGCGACAATTGCCTTTAACTCGTTCCAAACTGGATTGGAATAAAATCATCACTTATC 900 consensus_10529#1 ------------------------------------------------------------ consensus_10529#0 AGATAGGTAGCGAACTATCTAGAGCACCACCAAATTAAAATTATCAGTTGAAGTTAATTT 960 consensus_10529#1 ------------------------------------------------------------ consensus_10529#0 TCTTTTCATTACACACACACACGCACTACTCCTTTTGGCCGATAAGGTAAAATTGGAGAC 1020 consensus_10529#1 ------------------------------------------------------------ consensus_10529#0 GATTTAATATATTTTGATTTTTGGTGTACAATAAAAATCAAGGAAATTACGAATATTTTG 1080 consensus_10529#1 ------------------------------------------------------------ consensus_10529#0 CCTACTCTCTAATGAATTTAATATTATTGAAATATATATATGTTCCTTTTATGAATAGTT 1140 consensus_10529#1 ------------------------------------------------------------ consensus_10529#0 TACTAAAAATAAACTTTACCACTATAATGATCAGGAATTGTTTTCAGTTTTGATTTTTTT 1200 consensus_10529#1 ------------------------------------------------------------ consensus_10529#0 GCAACTCGATGATTTATCCAAGTCGTCATGTGTATTTTTTTGTTTTCCTCTTTCGTTACT 1260 consensus_10529#1 ------------------------------------------------------------ consensus_10529#0 TTTGATACATCTGTATTTAAAAAAAAGAAAACATCTCTAATTGTGTATGGTAGATGGTAC 1320 consensus_10529#1 ------------------------------------------------------------ consensus_10529#0 ATTTCACCATTAATTTTATTTGTGTTGATTCGATATATACGTTATAATTAATTA 1374 consensus_10529#1 ------------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||