These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10547#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 526 fasta sequence [TGACACACGAAACCGTACGAGCAGTCTAGAGTACGTATCGGCCCTGCGATCTGCTTAGCCCAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAACACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAGTCAAGGTCAAAATAAGCTAATGATAAGAGAAATACAAATATGAATAGTTCAGTTACGTAATAACTGTACAATAGGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTACCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTG-AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC-AACTAAAATTGTC-GGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT-ATCTTTTGTTTATCCTGTGTTAGATC] [+] EMBL CD158262 [TGACACACGAAACCGTACGAGCAGTCTAGAGTACGTATCGGCCCTGCGATCTGCTTAGCCCAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAACACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAGTCAAGGTCAAAATAAGCTAATGATAAGAGAAATACAAATATGAATAGTTCAGTTACGTAATAACTGTACAATAGGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTACCATTCGTAATTCACCGNGGNATATA ] [+] EMBL CD158165 [TGACACACGAAACCGTACGAGCAGTCTAGAGTACGTATCGGCCCTGCGATCTGCTTAGCCCAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAACACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAGTCAAGGTCAAAATAAGCTAATGATAAGAGAAATACAAATATGAATAGTTCAGTTACGTAATAACTGTACAATAGGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTACCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTG AACTANATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC AACTAANATTGTC GGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT ATCTTTTGTT ] [+] EMBL CD158297 [TGACACACGAAACCGTACGAGCAGTCTAGAGTGCGTATCGGCCCTGCGATCTGCTTAGCCCAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAACACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAGTCAAGGTCAAAATAAGCTAATGATAAGAGAAATACAAATATGAATAGTTCAGTTACGTAATAACTGTACAATAGGAGATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTACCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTGAAACT AATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAA CACTAAA ] [+] EMBL CD158250 [TGACACACGAAACCGTACGAGCAGTCTAGAGTACGTATCGGCCCTGCGATCTGCTTAGCCCAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAACACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGA ] [+] EMBL CD158163 [gGACACACGAAACCGCACGAGCAGTCGAGAGTACGTATCGGCCCTGAGATCTGCTTAGCCCAGCGAGTTAAGTCCAAAACACCAATAACAGCCTCAGAGGAATGAATCATTATTTACAAACACGCTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATATCTCAAGAACCGTATGATAATAAGTCAAGGTCAAAATACGCTATGGATAAGAGAAATACAAATATGAATAGTTCGGTTACGTAATAACTGTACAGTAGGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTACCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGACCTAGAAACCCTCTACTTATCTCTG AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAACAAACT AAATTGTCGGGTC AAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGTNATC TTTGTT ] [+] EMBL CD156654 [ TGCGATCTGCTTAGCCCAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAACACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAGTCAAGGTCAAAATAAGCTAATGATAAGAGAAATACAAATATGAATAGTTCAGTTACGTAATAACTGTACAATAGGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTACCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTG AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC AACTAAAATTGTC GGTCAAAAGAACGGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT ATCTTTTGTTT ] [+] EMBL CD156755 [ TGCGATCTGCTTAGCCCAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAACACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAGTCAAGGTCAAAATAAGCTAATGATAAGGGAAATACAAATATGAATAGTTCAGTTACGTAATAACTGTACAATAGGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTACCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTG AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC AACTAAAATTGTC GGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT ATCTTTTGTTT ] [+] EMBL CD156743 [ TGCGATCTGCTTAGCCCAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAACACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAGTCAAGGTCAAAATAAGCTAATGATAAGAGAAATACAAATATGAATAGTTCAGTTACGTAATAACTGTACAATAGGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTACCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTG AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC AACTAAAATTGTC GGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT ATCTTTTGTTT ] [+] EMBL CD156638 [ TGCGATCTGCTTAGCCCAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAACACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAGTCAAGGTCAAAATAAGCTAATGATAAGAGAAATACAAATATGAATAGTTCAGTTACGTAATAACTGTACAATAGGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTACCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTG AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC AACTAAAATTGTC GGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT ATCTTTTGGTT ] [+] EMBL CD156661 [ TGCGATCTGCTTAGCCCAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAACACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAGTCAAGGTCAAAATAAGCTAATGATAAGAGAAATACAAATATGAATAGTTCAGTTACGTAATAACTGTACAATAGGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTACCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTG AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC AACTAAAATTGTC GGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT ATCTTTTGTTT ] [+] EMBL CD156746 [ TGCGATCTGCTTAGCCCAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAACACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAGTCAAGGTCAAAATAAGCTAATGATAAGAGAAATACAAATATGAATAGTTCAGTTACGTAATAACTGTACAATAGGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTAGCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTG AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC AACTAAAATTGTC GGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT ATCTTTTGTTT ] [-] EMBL CD158083 [ ACTGTACAATAGGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTACCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTG AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC AACTAAAATTGTC GGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT ATCTTTTGTTT ] [-] EMBL CD156614 [ GGAAATAGGCATATTACATTGATCCATAAATAGACCTAAAAGCTGCCATTCGTAATTCACCGGGGGATATAGCAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTG AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC AACTAGAATTGTC GGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT ATCTTTTGTTTA ] [-] EMBL CD158089 [ TATAACAGAATACGAAATGTCATTGGCCCAGAAACCCTCTACTTATCTCTG AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC AACTAAAATTGTC GGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT ATCTTTTGTTT ] [-] EMBL CD158245 [ TATAACAGAATACGAAATGTCATTGACCCAGAAACCCTCTACTTATCTCTG AACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAACATAAGAAC AACTAAAATTGTC GGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAACGGTAGTCGATTTGTGAAACCGT ATCTTTTGTTT ] [-] EMBL CD157920 [ ATGTTTGGTACTTCGGTTGCAACATAAGATC AACTATAATTGTC GGTCAAAAGAACAGGTAATATTAGTTTAACGTATCAACGGTAGTCGATTTGTGAACCCGT ATCTTTTGTTTATCCTGTGTTAGATC] [-] EMBL CD157917 [ GGTATTTCGGTTGAAACATAAGAAC AACTAAAATTGTC GGTCAAAAGAACAGGTAATATTAGTTAAACGTAACAACGGTAGTCGATTTGTGAATCCGT ATCTTTTGTTT ] consensusID : consensus_10547#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 223 fasta sequence [TCATTATTTACAAACATACTGGGTTTTTATACAAACCATAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAATCAAAGATCAAAATAAAGCTAATGATAAGAGAAACACGAATATGAATAGTTTAGTTACGTAACAATTGCACAATAGGAAATAGGCATAATACATTGATCGATAAATAGTCCTTAGAGTTACCATTCATAATTCACCAG] [+] EMBL CD167146 [TCATTATTTACAAACATACTGGGTTTTTATACAAACCATAGTAATCAATAAACTGATTATAACTCAAGAATCGTATGATAATAAATCAAAGATCAAAATAAAGCTAATGATAAGAGAAACACGAATATGAATAGTTTAGTTACGTAACAATTGCACAATAGGAAATAGGCATAATACATTGATCGATAAATAGTCCTTAGAGTTACCATTCATAATTCACCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_10547#0 TGACACACGAAACCGTACGAGCAGTCTAGAGTACGTATCGGCCCTGCGATCTGCTTAGCC 60 consensus_10547#1 ------------------------------------------------------------ consensus_10547#0 CAGCCAGTTAAGTCCAAAACACCAATAACAGCCTCAGTGGTATGAATCATTATTTACAAA 120 consensus_10547#1 ----------------------------------------------TCATTATTTACAAA 14 ************** consensus_10547#0 CACACTGGGTTTTTATACAAACCAAAGTAATCAATAAACTGATTATAACTCAAGAATCGT 180 consensus_10547#1 CATACTGGGTTTTTATACAAACCATAGTAATCAATAAACTGATTATAACTCAAGAATCGT 74 ** ********************* *********************************** consensus_10547#0 ATGATAATAAGTCAAGG-TCAAAATAA-GCTAATGATAAGAGAAATACAAATATGAATAG 238 consensus_10547#1 ATGATAATAAATCAAAGATCAAAATAAAGCTAATGATAAGAGAAACACGAATATGAATAG 134 ********** **** * ********* ***************** ** *********** consensus_10547#0 TTCAGTTACGTAATAACTGTACAATAGGAAATAGGCATATTACATTGATCCATAAATAGA 298 consensus_10547#1 TTTAGTTACGTAACAATTGCACAATAGGAAATAGGCATAATACATTGATCGATAAATAGT 194 ** ********** ** ** ******************* ********** ******** consensus_10547#0 CCTAAAAGCTACCATTCGTAATTCACCGGGGGATATAACAGAATACGAAATGTCATTGAC 358 consensus_10547#1 CCTTAGAGTTACCATTCATAATTCACCAG------------------------------- 223 *** * ** ******** ********* * consensus_10547#0 CCAGAAACCCTCTACTTATCTCTGAACTAAATGGTAGAATGTTTGGTATTTCGGTTGAAA 418 consensus_10547#1 ------------------------------------------------------------ consensus_10547#0 CATAAGAACAACTAAAATTGTCGGTCAAAAGAACAGGTAATATGAGTTAAACGTAACAAC 478 consensus_10547#1 ------------------------------------------------------------ consensus_10547#0 GGTAGTCGATTTGTGAATCCGTATCTTTTGTTTATCCTGTGTTAGATC 526 consensus_10547#1 ------------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||