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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10548#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 2087 fasta sequence
[TGAGGGAGGCTGGGCACATTTTCGTGTTTCCTATCTCCACCTTCCAGAGTTCTTTGTTTCTTAGCAATCACAAACATTTCAAAGTATGCCTCTATTTGGTAAGCCAAAAAGCCCTCGTGAATTAATCCAAACTGTTAATGAGAACATAATCATTTTAAGTAACTGTGCCAAAACCGATAAAGAGCGGAAAAAAGCTGTTGAAGATATAGCAAGGGCTTTGACTGCTCTTCGGGAGCTGCTGACGGATAAGTCAGATACTCGATTGACTGGCAAAGAACGTGATTCAGAATTATCGAACTCTGAACGAGCACGAATTAATGAAATCATAACGGATGTAACTCATGAAATCATCAACCTCAATCTTTTGCCGCTTCTTGTAAACAATTTGGATGTCATCGAGTTTGAGAGTTCTAAACATATCGTTGATCTTTTCGGCCATATTATGAGGCGACAGGTAGGATCTTATAATCCTGCAGCTCAATATCTTTTGGCTAACTCTCAAATTTTAATATCTATCCTTCAAGGATACTCCAAACCTGACACTGCTATACACTATGGTGCAATGCTTCGGGATGCATGCCGACATGAATCTTTAGCCAAAGTTGTTCTTCGTTCACCAGAATTTTATCAGTTATTTGAACACGTACAAGGCACAGCATTTGATGTGAGCTCAGATGCTTTCGCTACATTGAAAGATTTGCTTACTCGTCATAAGGCGCTTGTAGCAGATTTTCTAACAGCTAATTATGATGTCTTTTTCGACCATTATATGCATATGATTTTATCAGATAATTACGTCACAAAAAGGCAAGCATTAAAGTTGTTAGGAGAGCTTTTACTTGATCGGCATAACATCTCAATAATGACCAAGTATATTGCAGATCCGGAAAACCTCAAAGTCATTATGAATATGTTGAAAAGTAAAGAAAAGCAAATTGCTTTTGAAGCGTTTCATTGTTTTAAGGTGTTTGTTGCAAATCCAAACAAGCCACCAGCTGTTCATATGATTCTATTTCGTAATCAGGAAAAATTACTATCCTTTCTGACAGATTTTCAAACTGAACGTACAGATGATGGTCAATTCAATGATGAAAAACAGTATTTGATCAAACAAATCAGAGAATTAAAACCAGTGCCTATTTCGTCTAATCCAAATCCCACCTAATTGAGCTCAATTCCGCGTTCTACCTAATAGAAATTTTTGGTCTTATTTCTTGTCTTTATTTAATGTGTCAGATTTGTATAAAATATGGTCTACGCCGTACATTCTTCAATTATAATATGTAGTCAGTACTCGTTCTTAGATCCTCTGACACGCTTTGTGTAATGATGGATAAATATTCTGTCAGTAATTATCTTTATGTTGCAAAGACTTGAATATTTTTGAGAAAACTGTATTATTTACCATAAGCCATTTTCATGTATTATCTCATA-ACTTTACTGACAGGAGAAGAGTAATTTTTAATGCTTCTGTTTGGTGATATTCCTCATGTTGTATACTACACTTGT-TACAGTTATTACCATCATACATTGTTAATCCGAGTTATTGGCTATAAATAATTTTACAACTCTTTCCTCATACAATTTTCTGTTTTTTGCATAGAAATTTTTTCTTTATTTCATTCACTCGAATCATTTATTTTAGTTGTTCATTTGGATTAATGAGGAATATTTTTTATCCGTATTCTGCAATATCTTAATTGGACAAATTAGCTGTATTTTGCAAC-TTTTTTTGTACAACTCTCAAATTTTGTAGAATATAGCATTGAATGTGTATATATACTTCTTTAGACGTCCACCTGTCTTTCCATG-ATAGTTCTGTGTAGTTAAGTCCTGCATA-TCATTCAGCCTGTTGGTTNTTCCCNGTTTG-NTTNCAC-TTTNCTGCTAGA-TTTCTGCATA-TAAAGACTA-TAGNNTG-NGAAGTGTCAGA--AAA-TGGNATTCCTTTTTCGTANCTATNAGAGNATTNTTGTGGACTATAAAATGTTTTGAGTAAAATCATATNACTACTATTACCCCTTTGATGATGANNATAAAGAGAATGGATCTGTCTCTCTTCTAACGTTTTTCCTCGACCGTTTTTTCCTTCAGGA]
[+] EMBL AW017188 [TGAGGGAGGCTGGGCACATTTTCGTGTTTCCTATCTCCACCTTCCAGAGTTCTTTGTTTCTTAGCAATCACAAACATTTCAAAGTATGCCTCTATTTGGTAAGCCAAAAAGCCCTCGTGAATTAATCCAAACTGTTAATGAGAACATAATCATTTTAAGTAACTGTGCCAAAACCGATAAAGAGCGGAAAAAAGCTGTTGAAGATATAGCAAGGGCTTTGACTGCTCTTCGGGAGCTGCTGACGGATAAGTCAGATACTCGATTGACTGGCAAAGAACGTGATTCAGAATTATCGAACTCTGAACGAGCACGAATTAATGAAATCATAACGGATGTAACTCATGAAATCATCAACCTCAATCTTTTGC ]
[+] EMBL CD194830 [ AAGTCAGATACTCGATTGACTGGCAAAGAACGTGATTCAGAATTATCGAACTCTGAACGAGCACGAATTAATGAAATCATAACGGATGTAACTCATGAAATCATCAACCTCAATCTTTTGCCGCTTCTTGTAAACAATTTGGATGTCATCGAGTTTGAGAGTTCTAAACATATCGTTGATCTTTTCGGCCATATTATGAGGCGACAGGTAGGATCTTATAATCCTGCAGCTCAATATCTTTTGGCTAACTCTCAAATTTTAATATCTATCCTTCAAGGATACTCCAAACCTGACACTGCTATACACTATGGTGCAATGCTTCGGGATGCATGCCGACATGAATCTTTAGCCAAAGTTGTTCTTCGTTCACCAGAATTTTATCAGTTATTTGAACACGTACAAGGCACAGCATTTGATGTGAGCTCAGATGCTTTCGCTACATTGAAAGATTTGCTTACTCGTCATAAGGCGCTTGTAGCAGATTTTCTAACAGCTAATTATGGTGTCTTTTTCGACCATTATATGCATATGATTNTATCAGAATATTACGTCACAAAAAGGC ]
[-] EMBL CD194681 [ CATGCCGACATGAATCTTTAGCCAAAGTTGTTCTTCGTTCACCAGAATTTTATCAGTTATTTGAACACGTACAAGGCACAGCATTTGATGTGAGCTCAGATGCTTTCGCTACATTGAAAGATTTGCTTACTCGTCATAAGGCGCTTGTAGCAGATTTTCTAACAGCTAATTATGATGTCTTTTTCGACCATTATATGCACATGATTTTATCAGATAATTACGTCACAAAAAGGCAAGCATTAAAGTTGTTAGGAGAGCTTTTACTTGATCGGCATAACATCTCAATAATGACCAAGTATATTGCAGATCCGGAAAACCTCAAAGTCATTATGAATATGTTGAAAAGTAAAGAAAAGCAAATTGCTTTTGAAGCGTTTCATTGTTTTAAGGTGTTTGTTGCAAATCCAAACAAGCCACCAGCTGTTCATATGATTCTATTTCGTAATCAGGAAAAATTACTATCCTTTCTGACAGATTTTCAAACTGAACGTACAGATGATGGTCAATTCAATGATGAAAAACAGTATTTGATCAAACAAATCAGAGAATTAAAACCAGTGCCTATTT ]
[-] EMBL CD090484 [ TTTTCTAACAGCTAATTATGATGTCTTTTTCGACCATTATATGCATATGATTTTATCAGATAATTACGTCACAAAAAGGCAAGCATTAAAGTTGTTAGGAGAGCTTTTACTTGATCGGCATAACATCTCAATAATGACCAAGTATATTGCAGATCCGGAAAACCTCAAAGTCATTATGAATATGTTGAAAAGTAAAGAAAAGCAAATTGCTTTTGAAGCGTTTCATTGTTTTAAGGTGTTTGTTGCAAATCCAAACAAGCCACCAGCTGTTCATATGATTCTATTTCGTAATCAGGAAAAATTACTATCCTTTCTGACAGATTTTCAAACTGAACGTACAGATGATGGTCAATTCAATGATGAAAAACAGTATTTGATCAAACAAATCAGAGAATTAAAACCAGTGCCTATTTCGTCTAATCCAAA ]
[-] EMBL CD167875 [ TCACAAAAAGGCAAGCATTAAAGTTGTTAGGAGAGCTTTTACTTGATCGGCATAACATCTCAATAATGACCAAGTATATTGCAGATCCGGAAAACCTCAAAGTCATTATGAATATGTTGAAAAGTAAAGAAAAGCAAATTGCTTTTGAAGCGTTTCATTGTTTTAAGGTGTTTGTTGCAAATCCAAACAAGCCACCAGCTGTTCATATGATTCTATTTCGTAATCAGGAAAAATTACTATCCTTTCTGACAGATTTTCAAACTGAACGTACAGATGATGGTCAATTCAATGATGAAAAACAGTATTTGATCAAACAAATCAGAGAATTAAAACCAGTGCCT ]
[-] EMBL CD167876 [ TTCTGACAGATTTTCAAACTGAACGTACAGATGATGGTCAATTCAATGATGAAAAACAGTATTTGATCAAACAAATCAGAGAATTAAAACCAGTGCCTAT ]
[+] EMBL CD082075 [ aacctcATTCAATGATGAAAAACAGTATTTGATC TACAAATCAGAGAATTAACACCAGTGCCTATTTCGTCTAATCCAAATCCCACCTAATTGAGCTCAATTCCGCGTTCTACCTAATAGAAATTTTTGGTCTTATTTCTTGTCTTTATTTAATGTGTCAGATTTGTATAAAATATGGTCTACGCCGTACATTCTTCAATTATAATATGTAGTCAGTACTCGTTCTTAGATCCTCTGACACGCTTTGTGTAATGATGGATAAATATTCTGTCAGTAATTATCTTTATGTTGCAAAGACTTGAATATTTTTGAGAAAACTGTATTATTTACCATAAGCCATTTTCATGTATTATCTCATA ACTTTACTGACAGGAGAAGAGTAATTTTTAATGCTTCTGTTTGGTGATATTCCTCATGTTGTATACTACACTTGT TACAGTTATTACCATCATACATTGTTAATCCGAGTTATTGGCTATAAATAATTTTACAACTCTTTCCTCATACAATTTTCTGTTTTTTGCATAGAAATTNTTTCTTTATTTCATTCACTCGAATCATTTATTNTAGTTGTTCATTTGGATTAATGAGGAATATTTTTTATCCGTATTCTGNCATATCTTAATTGGACAAATTAGCTGTATTTTGCAACTTTTTTTTGTAC ACTCTCAAATTTTGTAGAATATAGCATTGAATGTGTATATATACTTNCTTAGACGTCCACCTGTCTTT CATGNATAG TCTGTGTAGTTAAGTCCTGCATA TCATTCAGCCTGTTGGTTNTTCCCNGTTTG NTTNCAC TTTNCTGCTAGA TTTCTGCATA TAAAGACTA TAGNNTG NGAAGTGTCAGA AAA TGGNATTCCTTTTTCGTANCTATNAGAGNATTNTTGTGGACTATAAAATGTTTTGAGTAAAATCATATNACTACTATTACCCCTTTGATGATGANNATAAAGAGAATGGATCTGTCTCTCTTCTAACGTTTTTCCTCGACCGTTTTTTCCTTCAGGA]
[+] EMBL CD082783 [ gaggcTCAATGATGAAAAACAGTATTTGATCAAACAAATCAGAGAATTAAAACCAGTGCCTATTTCGTCTAATCCAAATCCCACCTAATTGAGCTCAATTCCGCGTTCTACCTAATAGAAATTTTTGGTCTTATTTCTTGTCTTTATTTAATGTGTCAGATTTGTATAAAATATGGTCTACGCCGTACATTCTTCAATTATAATATGTAGTCAGTACTCGTTCTTAGATCCTCTGACACGCTTTGTGTAATGATGGATAAATATTCTGTCAGTAATTATCTTTATGTTGCAAAGACTTGAATATTTTTGAGAAAACTGTATTATTTACCATAAGCCATTTTCATGTATTATCTCATA ACTTTACTGACAGGAGAAGAGTAATTTTTAATGCTTCTGTTTGGTGATATTCCTCATGTTGTATACTACACTTGT TACAGTTATTACCATCATACATTGTTAATCCGAGTTATTGGCTATAAATAATTNTACAACTCTNTCCTCATACAATTNTCTGTTTTTTGCATAGAAATTTTTTCTTTATTTCATTCACT ]
[-] EMBL CD162400 [ CGCGTTCTACCTAATAGAAATTTTTGGTCTTATTTCTTGTCTTTATTTAATGTGTCAGATTTGTATAAAATATGGTCTACGCCGTACATTCTTCAATTATAATATGTAGTCAGTACTCGTTCTTAGATCCTCTGACACGCTTCGTGTAATGATGGATAAATATTCTGTCAGTAATTATCTTTATGTTGCAAAGACTTGAATATTTTTAAGAAAACTGTATTATTTACCATAAGCCATTTTCATGTATTATCTCATA ACTTTACTGACAGGAGAAGAGTAATTTTTAATGCTTCTGTTTGGTGATATTCCTCATGTTGTATACTACACTTGT TACAGTTATTACCATCATACATTGTTAATCCGAGTTATTGGCTATAA ]
[-] EMBL CD177708 [ ATTTTCATGTA TATCTCATACNTTTTACTGACAGNAGAAGAGTAATTNTNAATGCTTCTGTTGGGTGATATTCCTCATGTTGTATACTACAC TGTANNCAGTTATTACCATCATACATTGTTAATCCGAGTTATTGGCTATAAATAATTTTACAACTCTTTCCTCATACAATTTTCTGTTTTTTGCATAGAAATTTTTTCTTTATTTCATTCACTCGAATCATTTATTTTAGTTGTTCATTTGGATTAATGAGGAATATTTTTTATCCGTATTCTGCAATATCTTAATTGGACAAATTAGCTGTATTTTGCAAC TTTTTTTGTACAACTCTCAAATTTTGTAGAATATAGCATTGAATGTGTATATATACTTCTTTAGACGTCCACCTGTCTTTCCATG GTAGTTCTGTGTAGTTAAGTCCTGCA ]
[+] EMBL CD146787 [ GTAATTTTTAATGCTTCTGTTTGGTGATATTCCTCATGTTGTATACTACACTTGT TACAGTTATTACCATCATACATTGTTAATCCGAGTTATTGGCTATAAATAATTTTACAACTCTTTCCTCATACAATTTTCTGTTTTTTGCATAGAAATTTTTTCTTTATTTCATTCACTCGAATCATTTATTTTAGTTGTTCATTTGGATTAATGAGGAATATTTTTTATCCGTATTCTGCAATATCTTAATTGGACAAATTAGCTGTATTTTGCAAC TTTTTTTGTACAACTCTCAAATTTTGTAGAATATAGCATTGAATGTGTATATATACTTCTTTAGACGTCCACCTGTCTTTCCATG ATAGTTCTG ]
[+] EMBL CD129684 [ CATCATACATTGTTAATCCGAGTTATTGCCTATAAATAATTTTACAACTCTTTCCTCATACAATTTTCTGTTTTTTGCATAGAAATTTTTTCTTTATTTCATTCACTCGAATCATTTATTTTAGTTGTTCATTTGGATTAATGAGGAATATTTCTTATCCGTATTCTGCAATATCTTAATTGGACAAATTAGCTGTATTTTGCAAC TTTTTTTGTACAACTCTCAAATTTTGTAGAATATAGCATTGAATGTGTATATATACTTCTTTAGACGTCCACCTGTCTTTCCATG ATAGTTCTGTGTAGTTAAGTCCTGCATATTCATTCAGCCTGTTGGTTTTTCCCGTTTTGTTTTCCACTTTTCCTGCTAGATTTTCTGCATATTAAAGACTATTAG TTGCGGAAGTGTCAGAGGAAATTGGATTTCTTTTTTCGT ]
consensusID : consensus_10548#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 599 fasta sequence
[TAGAAATTTTTTCTTTATTTCATTCACTCGAATCATTTATTTTAGTTGTTCATTTGGATTAATGAGGAATATTTTTTATCCGTATTCTGCAATATCTTAATTGGACAAATTAGCTGTATTTTGCAACTTTTTTTGTACAACTCTCAAATTTTGTAGAATATAGCATTGAATGTGTATATATACTTCTTTAGACGTCCACCTGTCTTTCCATGATAGTTCTGTGTAGTTAAGTCCTGCATATTCATTCAGCCTGTTGGTTTTTCCCGTTTTGTTTTCCACTTTTCCTGCTAGATTTTCTGCATATTAAAGACTATTAGTTGCGGAAGTGTCAGAGAAATTGGATTTCTTTTTTCGTAGTCTATGTAGAGTATTTTTGTTGGACTAATAAAAATGTTTTTGATGTAAAAAATCATTATTCACTTACTATTTAACCTTTTTTGATAGTATGTAGTAATAATAGAGTAATTGAATTCTGTTCTCTCTCTCCTAAACTGTTTCTTCCTCCGATACGTATTTCTTTACATTACAGTACATTCAATAATTCTGAATCCCTATTTTCCTATCTATGATTTTCTTTTTACTGTTAATATTATGATTGT]
[-] EMBL CD075690 [TAGAAATTTTTTCTTTATTTCATTCACTCGAATCATTTATTTTAGTTGTTCATTTGGATTAATGAGGAATATTTTTTATCCGTATTCTGCAATATCTTAATTGGACAAATTAGCTGTATTTTGCAACTTTTTTTGTACAACTCTCAAATTTTGTAGAATATAGCATTGAATGTGTATATATACTTCTTTAGACGTCCACCTGTCTTTCCATGATAGTTCTGTGTAGTTAAGTCCTGCATATTCATTCAGCCTGTTGGTTTTTCCCGTTTTGTTTTCCACTTTTCCTGCTAGATTTTCTGCATATTAAAGACTATTAGTTGCGGAAGTGTCAGAGAAATTGGATTTCTTTTTTCGTAGTCTATGTAGAGTATTTTTGTTGGACTAATAAAAATGTTTTTGATGTAAAAAATCATTATTCACTTACTATTTAACCTTTTTTGATAGTATGTAGTAATAATAGAGTAATTGAATTCTGTTCTCTCTCTCCTAAACTGTTTCTTCCTCCGATACGTATTTCTTTACATTACAGTACATTCA ]
[-] EMBL BF936240 [ TCGAATCATTTATTTAAGTTGTTCATTTGGATTAATGAGGAATATTTTTTATCCGTATTCTGCAATATCTTAATTGGACAAATTAGCTGTATTTTGCAACTTTTTTTGTACAACTCTCAAATTTTGTAGAATATAGCATTGAATGTGTATATATACTTCTTTAGACGTCCACCTGTCTTTCCATGATAGTTCTGTGTAGTTAAGTCCTGCATATTCATTCAGCCTGTTGGTTTTTCCCGTTTTGTTTTCCACTTTTCCTGCTAGATTTTCTGCATATTAAAGACTATTAGTTGCGGAAGTGTCAAAGAAATTGGATTTCTTTTTTCGTAGTCAATGTAGAGTATTTTTGTTGGACTAATAAAAATGTTTTTGATGTAAAAAATCATTATTCACTTACTACTTAACCTTTTTTGATAGTATGTAGTAATAATAGAGTAATTGAATTCTGTTCT ]
[-] EMBL CD076375 [ CCGTATTCTGCAATATCTTAATTGGACAAATTAGCTGTATTTTGCAACTTTTTTTGTACAACTCTCAAATTTTGTAGAATATAGCATTGAATGTGTATATATACTTCTTTAGACGTCCACCTGTCTTTCCATGATAGTTCTGTGTAGTTAAGTCCTGCATATTCATTCAGCCTGTTGGTTTTTCCCGTTTTGTTTTCCACTTTTCCTGCTAGATTTTCTGCATATTAAAGACTATTAGTTGCGGAAGTGTCAGAGAAATTGGATTTCTTTTTTCGTAGTCTATGTAGAGTATTTTTGTTGGACTAATAAAAATGTTTTTGATGTAAAAAATCATTATTCACTTACTATTTAACCTTTTTTGATAGTATGTAGTAATAATAGAGTAATTGAATTCTGTTCTCTCTCTCCTAAACTGTTTCTTCCTCCGATACGTATTTCTTTACATTACAGTACATTCAATAATTCTGAATCCCTATTTTCCTATCTATGATTTTCTTTTTACTGTTAATATTATGATTGT]
consensusID : consensus_10548#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence
[ATCGGCACGAGGTGAAAAACAGTATTTGATCAAACAAATCAGAGAATTAAAACCAGTGCCTATTTCGTCTAATCCAAATCCCACCTAATTGAGCTCAATTCCGCGTTCTACCTAATAGAAATTTTTGGTCTTATTTCTTGTCTTTATTTAATGTGTCAGATTTGTATAAAATATGGTCTACGCCGTACATTCTTCAATTATAATATGTAGTCAGTACTCGTTCTTAGATCCTCTGACACGCTTCGTGTAATGATGGATAAATATTCTGTCAGTAATTATCTTTATGTTGCAAAGACTTGAATATTTTTAAGAAAACTGTATTATTTACCATAAGCCATTTTCATGTATTATCTCATAACTTTACTGACAGGAGAAGAGTAATTTTTAATGCTTCTGTTTGGTGATATTCCTCATGTTGTATACTACACTTGTTACAGTTATTACCAT]
[+] EMBL CD083925 [ATCGGCACGAGGTGAAAAACAGTATTTGATCAAACAAATCAGAGAATTAAAACCAGTGCCTATTTCGTCTAATCCAAATCCCACCTAATTGAGCTCAATTCCGCGTTCTACCTAATAGAAATTTTTGGTCTTATTTCTTGTCTTTATTTAATGTGTCAGATTTGTATAAAATATGGTCTACGCCGTACATTCTTCAATTATAATATGTAGTCAGTACTCGTTCTTAGATCCTCTGACACGCTTCGTGTAATGATGGATAAATATTCTGTCAGTAATTATCTTTATGTTGCAAAGACTTGAATATTTTTAAGAAAACTGTATTATTTACCATAAGCCATTTTCATGTATTATCTCATAACTTTACTGACAGGAGAAGAGTAATTTTTAATGCTTCTGTTTGGTGATATTCCTCATGTTGTATACTACACTTGTTACAGTTATTACCAT]
consensusID : consensus_10548#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 407 fasta sequence
[TCGTGTTTCCTATCTCCACCTTCCAGAGTTCTTTGTTTCTTAGCAATCACAAACATTTCAAAGTATGCCTCTATTTGGTAAGCCAAAAAGCCCTCGTGAATTAATCCAAACTGTTAATGAGAACATAATCATTTTAAGTAACTGTGCCAGAACCGATAAAGAGCGGAAAAAAGCTGTTGAAGATATAGCAAGGGCTTTGACTGCTCTTCGGGAGCTGCTGACGGATAAGTCAGATACTCGATTGACTGGCAAAGAACGTGATTCAGAATTATCGAACTCTGAACGAGCACGAATTAATGAAATCATAACGGATGTAACTCATGAAATCATCAACCTCAATCTTTTGCCGCTTCTTGTAAACAATTTGGATGTCATCGAGTTTGAGGTATATGCTCTTTTGCCAGGCC]
[-] EMBL CD170213 [TCGTGTTTCCTATCTCCACCTTCCAGAGTTCTTTGTTTCTTAGCAATCACAAACATTTCAAAGTATGCCTCTATTTGGTAAGCCAAAAAGCCCTCGTGAATTAATCCAAACTGTTAATGAGAACATAATCATTTTAAGTAACTGTGCCAGAACCGATAAAGAGCGGAAAAAAGCTGTTGAAGATATAGCAAGGGCTTTGACTGCTCTTCGGGAGCTGCTGACGGATAAGTCAGATACTCGATTGACTGGCAAAGAACGTGATTCAGAATTATCGAACTCTGAACGAGCACGAATTAATGAAATCATAACGGATGTAACTCATGAAATCATCAACCTCAATCTTTTGCCGCTTCTTGTAAACAATTTGGATGTCATCGAGTTTGAGGTATATGCTCTTTTGCCAGGCC]
consensusID : consensus_10548#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence
[ACCCTCATAGGTTCGCAGGTCACTCGAATCATTTATTTTAGTTGTTCATTTGGATTAATGAGGAATATTTTTTATCCGTATTCTGCAATATCTTAATTGGACAAATTAGCTGTATTTTGCAACTTTTTTTGTACAACTCTCAAATTTTGTAGAATATAGCATTGAATGTGTATATATACTTCTTTAGACGTCCACCTGTCTTTCCATGATAGTTCTGTGTAGTTAAGTCCTGCGAACCTATGAGGGGATCCTCTAGAGTCGGCGGCGGACACA]
[-] EMBL CD060724 [ACCCTCATAGGTTCGCAGGTCACTCGAATCATTTATTTTAGTTGTTCATTTGGATTAATGAGGAATATTTTTTATCCGTATTCTGCAATATCTTAATTGGACAAATTAGCTGTATTTTGCAACTTTTTTTGTACAACTCTCAAATTTTGTAGAATATAGCATTGAATGTGTATATATACTTCTTTAGACGTCCACCTGTCTTTCCATGATAGTTCTGTGTAGTTAAGTCCTGCGAACCTATGAGGGGATCCTCTAGAGTCGGCGGCGGACACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10548#1 -----------------TAGAAATTTTTTCTTTATTTCATTCACTCGAATCATTTATTT- 42
consensus_10548#4 ---------------------ACCCTCATAGGTTCGCAGGTCACTCGAATCATTTATTT- 38
consensus_10548#3 ---------------------TCGTGTTTCCTATCTCCACCTTCCAGAGTTCTTTGTTTC 39
consensus_10548#0 TGAGGGAGGCTGGGCACATTTTCGTGTTTCCTATCTCCACCTTCCAGAGTTCTTTGTTTC 60
consensus_10548#2 ---------------------------ATCGGCACGAGGTGAAAAACAGTATTTGATCA- 32
* * * ** *
consensus_10548#1 TAGTTGTTCATTTGGATTAATGAGGAATATTTTTTATCCGTATTCTGCAATAT-CTTAAT 101
consensus_10548#4 TAGTTGTTCATTTGGATTAATGAGGAATATTTTTTATCCGTATTCTGCAATAT-CTTAAT 97
consensus_10548#3 TTAGCAATCACAAACATTT-CAAAGTATGCCTCTATTTGGTAAGCCAAAAAGC-CCTCGT 97
consensus_10548#0 TTAGCAATCACAAACATTT-CAAAGTATGCCTCTATTTGGTAAGCCAAAAAGC-CCTCGT 118
consensus_10548#2 -AACAAATCA-GAGAATTA-AAACCAGTGCCTATTTCGTCTAATCCAAATCCCACCTAAT 89
*** *** * * * * ** * * * * *
consensus_10548#1 TGGACAAATTAG-CTGTATTTTGCAAC----TTTTTTTGTACAACTCT--CAAATTTTGT 154
consensus_10548#4 TGGACAAATTAG-CTGTATTTTGCAAC----TTTTTTTGTACAACTCT--CAAATTTTGT 150
consensus_10548#3 GAATTAATCCAAACTGTTAATGAGAACATAATCATTTTAAGTAACTGTGCCAGAACCGAT 157
consensus_10548#0 GAATTAATCCAAACTGTTAATGAGAACATAATCATTTTAAGTAACTGTGCCAAAACCGAT 178
consensus_10548#2 TGAGCTCAATTCCGCGTTCTACCTAATAGAAATTTTTGGTCTTATTTCTTGTCTTTATTT 149
** ** *** * * *
consensus_10548#1 AGAATATAGCATTGAATGTGTATATATACTTCTTTAGACGTCCACCTGTCTT--TCCATG 212
consensus_10548#4 AGAATATAGCATTGAATGTGTATATATACTTCTTTAGACGTCCACCTGTCTT--TCCATG 208
consensus_10548#3 AAAGAGCGGAAAAAAGCTGTTGAAGATATAGC--AAGGGCTTTGACTGCTCT--TC---G 210
consensus_10548#0 AAAGAGCGGAAAAAAGCTGTTGAAGATATAGC--AAGGGCTTTGACTGCTCT--TC---G 231
consensus_10548#2 AATGTGTCAGATTTGTATAAAATATGGTCTACGCCGTACATTCTTCAATTATAATATGTA 209
* * * * * * * *
consensus_10548#1 ATAGTTCTGTGTAGTTAAGTCC--TG-CATATTC---ATTCAGCCTGTTGGTTTTTCCCG 266
consensus_10548#4 ATAGTTCTGTGTAGTTAAGTCC--TG-CGAACCT---ATGAGG------GGATCCTCTAG 256
consensus_10548#3 GGAGCTGCTGACGGATAAGTCAGATA-CTCGATT---GACTGGCAAAGAACGTGATTCAG 266
consensus_10548#0 GGAGCTGCTGACGGATAAGTCAGATA-CTCGATT---GACTGGCAAAGAACGTGATTCAG 287
consensus_10548#2 GTCAGTACTCGTTCTTAGATCCTCTGACACGCTTCGTGTAATGATGGATAAATATTCTGT 269
* ** ** * * * * *
consensus_10548#1 TTTTGTTTTCCACTTTTCCTGCTAGATTT-TCTGCA-TATTAAAGACTATTAGTTGCGGA 324
consensus_10548#4 AGTCGGCGGCGGACACA------------------------------------------- 273
consensus_10548#3 AATTATCGAACTCTGAACGAGCACGAATT-AATGAAATCATAACGGATGTAACTCATGAA 325
consensus_10548#0 AATTATCGAACTCTGAACGAGCACGAATT-AATGAAATCATAACGGATGTAACTCATGAA 346
consensus_10548#2 CAGTAATTATCTTTATGTTGCAAAGACTTGAATATTTTTAAGAAAACTGTATTATTTACC 329
consensus_10548#1 AGTGTCAGAGAAATTGGATTTCTTTTTTCGTAGTCTATGTAGAGTATTTTTGTTGGACTA 384
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ATCATCAACCTCAATCTTTTGCCGCTTCTTGTAAACAATTTGGATGTCATCGAGTTTGAG 385
consensus_10548#0 ATCATCAACCTCAATCTTTTGCCGCTTCTTGTAAACAATTTGGATGTCATCGAGTTTGAG 406
consensus_10548#2 ATAAGCCATTTTCATGTATTATCTCATAACTTTACTGACAGGAGAAGAGTAATTTTTAAT 389
consensus_10548#1 ATAAAAATGTTTTTGATGTAAAAAATCATTATTCACTTACTATTTAACCTTTTTTGATAG 444
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 GTATATGCTCTTTTGCCAGGCC-------------------------------------- 407
consensus_10548#0 AGTTCTAAACATATCGTTGATC---TTTTCGGCCATATTATGAGGCGACAGGTAGGATCT 463
consensus_10548#2 GCTTCTGTTTGGTGATATTCCTCATGTTGTATACTACACTTGTTACAGTTATTACCAT-- 447
consensus_10548#1 TATGTAGTAATAATAGAGTAATTGAATTCTGTTCTCTCTCTCCTAAACTGTTTCTTCCTC 504
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 TATAATCCTGCAGCTCAATATCTTTTGGCTAACTCTCAAATTTTAATATCTATCCTTCAA 523
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 CGATACGTATTTCTTTACATTACAGTACATTCAATAATTCTGAATCCCTATTTTCCTATC 564
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 GGATACTCCAAACCTGACACTGCTATACACTATGGTGCAATGCTTCGGGATGCATGCCGA 583
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 TATGATTTTCTTTTTACTGTTAATATTATGATTGT------------------------- 599
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 CATGAATCTTTAGCCAAAGTTGTTCTTCGTTCACCAGAATTTTATCAGTTATTTGAACAC 643
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 GTACAAGGCACAGCATTTGATGTGAGCTCAGATGCTTTCGCTACATTGAAAGATTTGCTT 703
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 ACTCGTCATAAGGCGCTTGTAGCAGATTTTCTAACAGCTAATTATGATGTCTTTTTCGAC 763
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 CATTATATGCATATGATTTTATCAGATAATTACGTCACAAAAAGGCAAGCATTAAAGTTG 823
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 TTAGGAGAGCTTTTACTTGATCGGCATAACATCTCAATAATGACCAAGTATATTGCAGAT 883
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 CCGGAAAACCTCAAAGTCATTATGAATATGTTGAAAAGTAAAGAAAAGCAAATTGCTTTT 943
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 GAAGCGTTTCATTGTTTTAAGGTGTTTGTTGCAAATCCAAACAAGCCACCAGCTGTTCAT 1003
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 ATGATTCTATTTCGTAATCAGGAAAAATTACTATCCTTTCTGACAGATTTTCAAACTGAA 1063
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 CGTACAGATGATGGTCAATTCAATGATGAAAAACAGTATTTGATCAAACAAATCAGAGAA 1123
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 TTAAAACCAGTGCCTATTTCGTCTAATCCAAATCCCACCTAATTGAGCTCAATTCCGCGT 1183
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 TCTACCTAATAGAAATTTTTGGTCTTATTTCTTGTCTTTATTTAATGTGTCAGATTTGTA 1243
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 TAAAATATGGTCTACGCCGTACATTCTTCAATTATAATATGTAGTCAGTACTCGTTCTTA 1303
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 GATCCTCTGACACGCTTTGTGTAATGATGGATAAATATTCTGTCAGTAATTATCTTTATG 1363
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 TTGCAAAGACTTGAATATTTTTGAGAAAACTGTATTATTTACCATAAGCCATTTTCATGT 1423
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 ATTATCTCATAACTTTACTGACAGGAGAAGAGTAATTTTTAATGCTTCTGTTTGGTGATA 1483
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 TTCCTCATGTTGTATACTACACTTGTTACAGTTATTACCATCATACATTGTTAATCCGAG 1543
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 TTATTGGCTATAAATAATTTTACAACTCTTTCCTCATACAATTTTCTGTTTTTTGCATAG 1603
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 AAATTTTTTCTTTATTTCATTCACTCGAATCATTTATTTTAGTTGTTCATTTGGATTAAT 1663
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 GAGGAATATTTTTTATCCGTATTCTGCAATATCTTAATTGGACAAATTAGCTGTATTTTG 1723
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 CAACTTTTTTTGTACAACTCTCAAATTTTGTAGAATATAGCATTGAATGTGTATATATAC 1783
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 TTCTTTAGACGTCCACCTGTCTTTCCATGATAGTTCTGTGTAGTTAAGTCCTGCATATCA 1843
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 TTCAGCCTGTTGGTTNTTCCCNGTTTGNTTNCACTTTNCTGCTAGATTTCTGCATATAAA 1903
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 GACTATAGNNTGNGAAGTGTCAGAAAATGGNATTCCTTTTTCGTANCTATNAGAGNATTN 1963
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 TTGTGGACTATAAAATGTTTTGAGTAAAATCATATNACTACTATTACCCCTTTGATGATG 2023
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ------------------------------------------------------------
consensus_10548#4 ------------------------------------------------------------
consensus_10548#3 ------------------------------------------------------------
consensus_10548#0 ANNATAAAGAGAATGGATCTGTCTCTCTTCTAACGTTTTTCCTCGACCGTTTTTTCCTTC 2083
consensus_10548#2 ------------------------------------------------------------
consensus_10548#1 ----
consensus_10548#4 ----
consensus_10548#3 ----
consensus_10548#0 AGGA 2087
consensus_10548#2 ----
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||