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Schistosoma mansoni
cluster # 10550 cluster # 10550       Sequences # 18       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10550#0 length = 795 sequences # 10  
consensus_10550#1 length = 745 sequences # 2  
consensus_10550#2 length = 417 sequences # 1  
consensus_10550#3 length = 368 sequences # 1  
consensus_10550#4 length = 334 sequences # 3  
consensus_10550#5 length = 204 sequences # 1  

consensusID : consensus_10550#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 795
fasta sequence
                              [GGCTTCTTCATTGCCGTGTACGCCACGATGACTACGGACATGGTACCAGATTATTTCAATTCCTGATTCAGCGATAACTTCAAGTAATCGTTTAACTGGTTCTTTTAATTTAGCATCTTCACCATTGGCTAATTTCCAGGCATTTCGCGCCCACCGTTGACCCCATTCTGTTGCACAGTTTTGAGTGAATTTACTATCAGTAACTATTCCCAAATGAGTAATACCACCAATGTGTGCCTGTTTAATTGCACATATCACCGCCTCAATTTCTGCTCTATTATTTGTTTGCTCTCCTTCTAAACGCTCAGAGACATTCCATGGATGATTAGGTCCCCAGTAAACACCATAACCAGCACGACGATCATCATGTGCACCGTTACATGAACCATCAGTATAAACCATTACACGT-CGCGGGCATGATGCATCATGATAAAATGTTAGAGTGCTTGGAACATGGTCACTACTGATGTAATGCTCTTCAGGAGATAACTTGGTCGGTAACGGA---TCTCGACCATCCAGGTCATTATTCATGCTCCCAATCTTTCGCTTTTTCGAGAGTACAGTTCCAACCTCATGCCCAGCTTCAATAAACTTTATAGCTTCATCATAGGAAGTGAATTTCTTAAAGCAAGCTCCAGCGTAGCCATTTACAAGGTCTTTGCACTCAGACCCAATTACTTCATAGTTAAAAACTTCATAGGACTCACCAACTCGAGAAGACACCGACGCTACGACCGACTCGTACACCATAAAAAGGCATTTTAAATATCGCATACGCCTTGGGCGCCTAAAACA]

[+] EMBL CD190508             [GGCTTCTTCATTGCCGTGTACGCCACGATGACTACGGACATGGTACCAGATTATTTCAATTCCTGATTCAGCGATAACTTCAAGTAATCGTTTAACTGGTTCTTTTAATTTAGCATCTTCACCATTGGCTAATTTCCAGGCATTTCGCGCCCACCGTTGACCCCATTCTGTTGCACAGTTTTGAGTGAATTTACTATCAGTAACTATTCCCAAATGAGTAATACCACCAATGTGTGCCTGTTTAATTGCACATATCACCGCCTCAATTTCTGCTCTATTATTTGTTTGCTCTCCTTCTAAACGCTCAGAGACATTCCATGGATGATTAGGTCCCCAGTAAACACCATAACCAGCACGACGATCATCATGTGCACCGTTACATG                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD190371             [                 GTACGCCACGATGACTACGGACATGGTACCAGATTATTTCAATTCCTGATTCAGCGATAACTTCAAGTAATCGTTTAACTGGTTCTTTTAATTTAGCATCTTCACCATTGGCTAATTTCCAGGCATTTCGCGCCCACCGTTGACCCCATTCTGTTGCACAGTTTTGAGTGAATTTACTATCAGTAACTATTCCCAAATGAGTAATACCACCAATGTGTGCCTGTTTAATTGCACATATCACCGCCTCAATTTCTGCTCTATTATTTGTTTGCTCTCCTTCTAAACGCTCAGAGACATTCCATGGATGATTAGGTCCCCAGTAAACACCATAACCAGCACGACGATCATCATGTGCACCGTTACATGAACCATCAGTATAAACCATTACACGT CGCGGGCATGATGCATCATGATAAAATGTTAGAGTGCTTGGAACATGGTCACTACTGATGTAATGCTCTTCAGGAGATAACTTGGTCGGTAACGGA   TCTCGACCAT  AGGTCATTATTCATGCTCCCAA                                                                                                                                                                                                                                                                ]
[+] EMBL CD161519             [                                                                                                                                  AATTTCCAGGCATTTCGCGCCCACCGTTGACCCCATTCTGTTGCACAGTTTTGAGTGAATTTACTATCAGTAACTATTCCCAAATGAGTAATACCACCAATGTGTGCCTGTTTAATTGCACATATCACCGCCTCAATTTCTGCTCTATTATTTGTTTGCTCTCCTTCTAAACGCTCAGAGACATTCCATGGATGATTAGGTCCCCAGTAAACACCATAACCAGCACGACGATCATCATGTGCACCGTTACATGA                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD144471             [                                                                                                                                                                 CCCATTCTGTTGCACAGTTTTGAGTGAATTTACTATCAGTAACTATTCCCAAATGAGTAATACCACCAATGTGTGCCTGTTTAATTGCACATATCACCGCCTCAATTTCTGCTCTATTATTTGTTTGCTCTCCTTCTAAACGCTCAGAGACATTCCATGGATGATTAGGTCCCCAGTAAACACCATAACCAGCACGACGATCATCATGTGCACCGTTACATGAACCATCAGTATAAACC                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD144425             [                                                                                                                                                                 CCCATTCTGTTGCACAGTTTTGAGTGAATTTACTATCAGTAACTATTCCCAAATGAGTAATACCACCAATGTGTGCCTGTTTAATTGCACATATCACCGCCTCAATTTCTGCTCTATTATTTGTTTGCTCTCCTTCTAAACGCTCAGAGACATTCCATGGATGATTAGGTCCCCAGTAAACACCATAACCAGCACGACGATCATCATGTGCACCGTTACATGAACCATCAGTATAAACC                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD177915             [                                                                                                                                                                                  TTTTGAGTGAATTTACTATCAGTAACTATTCCCAAATGAGTAATACCACCAATGTGTGCCTGTTTAATTGCACATATCACCGCCTCAATTTCTGCTCTATTATTTGTTTGCTCTCCTTCTAAACGCTCAGAGACATTCCATGGATGATTAGGTCCCCAGTAAACACCATAACCAGCACGACGATCATCATGTGCACCGTTACATGAACCATCAGTATAAACCATTACACGT CGCGGGCATGATGCATCATGATAAAATGTTAGAGTGCTTGGAACATGGTCACTACTGATGTAATGCTCTTCAGGAGATAACTTGGTCGGTTACGGA   TCTCGACCATCCAGGTCTTTTTTCATGa                                                                                                                                                                                                                                                                      ]
[-] EMBL CD160693             [                                                                                                                                                                                            ATTTACTATCAGTAACTATTCCCAAATGAGTAATACCACCAATGTGTGCCTGTTTAATTGCACATATCACCGCCTCAATTTCTGCTCTATCATTTGTTTGCTCTCCTTCTAAACGCTCAGAGACATTCCATGGATGATTAGGTCCCCAGTAAACACCATAACCAGCACGACGATCAACATGTGCACCGTTACATGAACCATCAGTATAAACCATTACACGT CGCGGGCATGATGCATCATGATAAGATGTTAGAGTGCTTGGAACATGGTCACTACTGATGTAATGCTCTTCAGGAGATAACTTGGTCGGTAACGGA   TCTCGACCATCCAGGTCATTATTCATGCTCCCAATCTTTCGCTTTTTCGAGAGTACAGTTCCAACCTCATGCCCAGCTTCAATAAACTTTATAGCTTCATCATAGGAAGTGAATTTCTTAAAGCAAGCTCCGGCGTAGCCAT                                                                                                                                                    ]
[-] EMBL CD097776             [                                                                                                                                                                                                                                                                                                                                                                                                     CAGTATAAACCATTACACGT CGCGGGCATGATGCATCATGATAAAATGTTAGAGTGCTTGGAACATGGTCACTACTGATGTAATGCTCTTCAGGAGATAACTTGGTCGGTAACGGATCTTCTCGACCATCCAGGTCATTATTCATGCTCCCAATCTTTCGCTTTTTCGAGAGTACAGTTCCAACCTCATGCCCAGCTTCAATAAACTTTATAGCTTCATCATAGGAAGTGAATTTCTTAAAGCAAGCTCCAGCGTAGCCATTTACAAGGTCTTTGCACTCAGACCCAATTACTTCATAGTTAAAAACTTCATAGGACTCACCAACTCGAGAAGACACCGACGCTACGACCGACTCGTACACCATAAAAAGGCATTTTAAATATCGCATACGCCTTGGGCGCCTAAAACA]
[-] EMBL CD097854             [                                                                                                                                                                                                                                                                                                                                                                                                                  TACACGTCCGCGGGCATGATGCATCATGATAAAATGTTAGAGTGCTTGGAACATGGTCACTACTGATGTAATGCTCTTCAGGAGATAACTTGGTCGGTAACGGATCTTCTCGACCATCCAGGTCATTATTCATGCTCCCAATCTTTCGCTTTTTCGAGAGTACAGTTCCAACCTCATGCCCAGCTTCAATAAACTTTATAGCTTCATCATAGGAAGTGAATTTCTTAAAGCAAGCTCCAGCGTAGCCATTTACAAGGTCTTTGCACTCAGACCCAATTACTTCATAGTTAAAAACTTCATAGGACTCACCAACTCGAGAAGACACCGACGCTACGACCGACTCGTACACCATAAAAAGGCATTTTAAATATCGCATACGCCTTGGGCGCCTAAAACA]
[-] EMBL CD159119             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ACTACTGATGTAATGCTCTTCAGGAGATAACTTGGTCGGTAACGGATCTTCTCGACCATCCAGGTCATTATTCATGCTCCCAATCTTTCGCTTTTTCGAGAGTACAGTTCCAACCTCATGCCCAGCTTCAATAAACTTTATAGCTTCATCATAGGAAGTGAATTTCTTAAAGCAAGCTCCAGCGTAGCCATT                                                                                                                                                   ]


>consensus_10550#0 GGCTTCTTCATTGCCGTGTACGCCACGATGACTACGGACATGGTACCAGATTATTTCAAT TCCTGATTCAGCGATAACTTCAAGTAATCGTTTAACTGGTTCTTTTAATTTAGCATCTTC ACCATTGGCTAATTTCCAGGCATTTCGCGCCCACCGTTGACCCCATTCTGTTGCACAGTT TTGAGTGAATTTACTATCAGTAACTATTCCCAAATGAGTAATACCACCAATGTGTGCCTG TTTAATTGCACATATCACCGCCTCAATTTCTGCTCTATTATTTGTTTGCTCTCCTTCTAA ACGCTCAGAGACATTCCATGGATGATTAGGTCCCCAGTAAACACCATAACCAGCACGACG ATCATCATGTGCACCGTTACATGAACCATCAGTATAAACCATTACACGTCGCGGGCATGA TGCATCATGATAAAATGTTAGAGTGCTTGGAACATGGTCACTACTGATGTAATGCTCTTC AGGAGATAACTTGGTCGGTAACGGATCTCGACCATCCAGGTCATTATTCATGCTCCCAAT CTTTCGCTTTTTCGAGAGTACAGTTCCAACCTCATGCCCAGCTTCAATAAACTTTATAGC TTCATCATAGGAAGTGAATTTCTTAAAGCAAGCTCCAGCGTAGCCATTTACAAGGTCTTT GCACTCAGACCCAATTACTTCATAGTTAAAAACTTCATAGGACTCACCAACTCGAGAAGA CACCGACGCTACGACCGACTCGTACACCATAAAAAGGCATTTTAAATATCGCATACGCCT TGGGCGCCTAAAACA



consensusID : consensus_10550#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 745
fasta sequence
                              [TGATTGGGCCGGCCCGGGCTGGACAAAACTAAACGTACACAAAAGAATAACAGAGGCGCTATAAGCCCCAATGTCAATACCATGATGAGTATCTGAAATGGAAACTGATTTAGAGGTAATCTTAACGACCTGGGAGCTTAGCCTAAGAGCTTGAGTAAAAACTACGTGAGTTTGGTCATATACAGCTTTTCTGAAAATACTAAACACATACCTGTTTTCAAATCTCACATGAATAACTTTTACGAGAAAAATCGATGGGGTCAACTAAATAAATGTAAATAATAGTAATATCAACAGTAGTACGATCCGATATATCAAATAATTGATGCTGATTATTTGCCACAAACACTGACAAAGATAGTAAACGATACACAAGATTATCCATATTATTTGATAAATGGTATGACGCTAAAGTTTATAACACGATTACTCCATAATTATGTTAAGAGGAAGACAGCGAGTCCACACTAAAAAGCAAAAAAATTACCCAGATTA-TTTCAATTCCTGATTCAGCGATAACTTCAAGTATTCGTTTAACTGGTTCTTTTAATTTAGCATCTTCACCATTGGCTAATTTCCAGGCATTTCGCGCCCACCGTTGACCCCATTCTGTTGCACAGTTTTGAGTGAATTTACTATCAGTAACTATTCCCAAATGAGTAATACCACCAATGTGTGCCTGTTTAATTGCACATATCACCGCCTAATTTAAAGAAATGCATTAAAAAAGAATCATAATTTTTTT]

[+] EMBL CD200878             [TGATTGGGCCGGCCCGGGCTGGACAAAACTAAACGTACACAAAAGAATAACAGAGGCGCTATAAGCCCCAATGTCAATACCATGATGAGTATCTGAAATGGAAACTGATTTAGAGGTAATCTTAACGACCTGGGAGCTTAGCCTAAGAGCTTGAGTAAAAACTACGTGAGTTTGGTCATATACAGCTTTTCTGAAAATACTAAACACATACCTGTTTTCAAATCTCACATGAATAACTTTTACGAGAAAAATCGATGGGGTCAACTAAATAAATGTAAATAATAGTAATATCAACAGTAGTACGATCCGATATATCAAATAATTGATGCTGATTATTTGCCACAAACACTGACAAAGATAGTAAACGATACACAAGATTATCCATATTATTTGATAAATGGTATGACGCTAAAGTTTATAACACGATTACTCCATAATTATGTTAAGAGGAAGACAGCGAGTCCACACTAAAAAGCAAAAAAATTACCCAGATTA TTTCAATTCCTGATTCAGCGATAACTTCAAGTAT                                                                                                                                                                                                                        ]
[-] EMBL CD181510             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                          GAGTCCACACTAAAAAGCAAAAAAATTACNCAGATTATTTTCAATTCCTGATTCAGCGATAACTTCAAGTAATCGTTTAACTGGTTCTTTTAATTTAGCATCTTCACCATTGGCTAATTTCCAGGCATTTCGCGCCCACCGTTGACCCCATTCTGTTGCACAGTTTTGAGTGAATTTACTATCAGTAACTATTCCCAAATGAGTAATACCACCAATGTGTGCCTGTTTAATTGCACATATCACCGCCTAATTTAAAGAAATGCATTAAAAAAGAATCATAATTTTTTT]


>consensus_10550#1 TGATTGGGCCGGCCCGGGCTGGACAAAACTAAACGTACACAAAAGAATAACAGAGGCGCT ATAAGCCCCAATGTCAATACCATGATGAGTATCTGAAATGGAAACTGATTTAGAGGTAAT CTTAACGACCTGGGAGCTTAGCCTAAGAGCTTGAGTAAAAACTACGTGAGTTTGGTCATA TACAGCTTTTCTGAAAATACTAAACACATACCTGTTTTCAAATCTCACATGAATAACTTT TACGAGAAAAATCGATGGGGTCAACTAAATAAATGTAAATAATAGTAATATCAACAGTAG TACGATCCGATATATCAAATAATTGATGCTGATTATTTGCCACAAACACTGACAAAGATA GTAAACGATACACAAGATTATCCATATTATTTGATAAATGGTATGACGCTAAAGTTTATA ACACGATTACTCCATAATTATGTTAAGAGGAAGACAGCGAGTCCACACTAAAAAGCAAAA AAATTACCCAGATTATTTCAATTCCTGATTCAGCGATAACTTCAAGTATTCGTTTAACTG GTTCTTTTAATTTAGCATCTTCACCATTGGCTAATTTCCAGGCATTTCGCGCCCACCGTT GACCCCATTCTGTTGCACAGTTTTGAGTGAATTTACTATCAGTAACTATTCCCAAATGAG TAATACCACCAATGTGTGCCTGTTTAATTGCACATATCACCGCCTAATTTAAAGAAATGC ATTAAAAAAGAATCATAATTTTTTT



consensusID : consensus_10550#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 417
fasta sequence
                              [GTACGCCACGATGACTACGGACATGGTACTTGTTAGCTACCAAATCCAATCACCAATCATTGTAAAAATGCCGATTCCAAAAATTTATTGTGGCTTGAACTGCTGACCGTTAAAATAATTGACTGCTAAGCAAAATTCAAATTTTGGTAGGAGCATAGATTTCTTTAGCAGTGCGAACGCCCAGATTATTTCAATTCCTGATTCAGCGATAACTTCAAGTAATCGTTTGACTGGTTCTTTTAATTTAGCATCTTCACCATTGGCTAATTTCCAGGCATTTCGCGCCCACCGTTGACCCCATTCTGTTGCACAGTTTTGAGTGAATTTACTATCAGTAACTATTCCCAAATGAGTAATACCACCAATGTGTGCCTGTTTAATTGCACATATCACCGCCTAATTTAAAGAAATGCATTA]

[+] EMBL CD130736             [GTACGCCACGATGACTACGGACATGGTACTTGTTAGCTACCAAATCCAATCACCAATCATTGTAAAAATGCCGATTCCAAAAATTTATTGTGGCTTGAACTGCTGACCGTTAAAATAATTGACTGCTAAGCAAAATTCAAATTTTGGTAGGAGCATAGATTTCTTTAGCAGTGCGAACGCCCAGATTATTTCAATTCCTGATTCAGCGATAACTTCAAGTAATCGTTTGACTGGTTCTTTTAATTTAGCATCTTCACCATTGGCTAATTTCCAGGCATTTCGCGCCCACCGTTGACCCCATTCTGTTGCACAGTTTTGAGTGAATTTACTATCAGTAACTATTCCCAAATGAGTAATACCACCAATGTGTGCCTGTTTAATTGCACATATCACCGCCTAATTTAAAGAAATGCATTA]


>consensus_10550#2 GTACGCCACGATGACTACGGACATGGTACTTGTTAGCTACCAAATCCAATCACCAATCAT TGTAAAAATGCCGATTCCAAAAATTTATTGTGGCTTGAACTGCTGACCGTTAAAATAATT GACTGCTAAGCAAAATTCAAATTTTGGTAGGAGCATAGATTTCTTTAGCAGTGCGAACGC CCAGATTATTTCAATTCCTGATTCAGCGATAACTTCAAGTAATCGTTTGACTGGTTCTTT TAATTTAGCATCTTCACCATTGGCTAATTTCCAGGCATTTCGCGCCCACCGTTGACCCCA TTCTGTTGCACAGTTTTGAGTGAATTTACTATCAGTAACTATTCCCAAATGAGTAATACC ACCAATGTGTGCCTGTTTAATTGCACATATCACCGCCTAATTTAAAGAAATGCATTA



consensusID : consensus_10550#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 368
fasta sequence
                              [GAGTCTGCTTCTTCATTGCCGTGTACGCCACGGTGACTACGGACATGGTACCAGATTATTTCAATTCCTGATTCAGCGATAACTTCAAGTAATCGTTTAACTGGTTCTTTTAATTTAGCATCTTCACCATTGGCTAATTTCCAGGCATTTCGCGCCCACCGTTGACCCCATTCTGTTGCACAGTTTTGAGTGAATTTACTATCAGTAACTATTCCCAAATGAGTAATACCACCAATGTGTGCCTGTTTAATTGCACATATCACCGCCTCAATTTCTGCTCTATTATTTGTTTGCTCTCCTTCTAAACGCTCAGAGACATTCCATGGATGATTAGGTCCCCAGTAAACACCATAATAGAGCAAAAAAAG]

[-] EMBL CD187126             [GAGTCTGCTTCTTCATTGCCGTGTACGCCACGGTGACTACGGACATGGTACCAGATTATTTCAATTCCTGATTCAGCGATAACTTCAAGTAATCGTTTAACTGGTTCTTTTAATTTAGCATCTTCACCATTGGCTAATTTCCAGGCATTTCGCGCCCACCGTTGACCCCATTCTGTTGCACAGTTTTGAGTGAATTTACTATCAGTAACTATTCCCAAATGAGTAATACCACCAATGTGTGCCTGTTTAATTGCACATATCACCGCCTCAATTTCTGCTCTATTATTTGTTTGCTCTCCTTCTAAACGCTCAGAGACATTCCATGGATGATTAGGTCCCCAGTAAACACCATAATAGAGCAAAAAAAG]


>consensus_10550#3 GAGTCTGCTTCTTCATTGCCGTGTACGCCACGGTGACTACGGACATGGTACCAGATTATT TCAATTCCTGATTCAGCGATAACTTCAAGTAATCGTTTAACTGGTTCTTTTAATTTAGCA TCTTCACCATTGGCTAATTTCCAGGCATTTCGCGCCCACCGTTGACCCCATTCTGTTGCA CAGTTTTGAGTGAATTTACTATCAGTAACTATTCCCAAATGAGTAATACCACCAATGTGT GCCTGTTTAATTGCACATATCACCGCCTCAATTTCTGCTCTATTATTTGTTTGCTCTCCT TCTAAACGCTCAGAGACATTCCATGGATGATTAGGTCCCCAGTAAACACCATAATAGAGC AAAAAAAG



consensusID : consensus_10550#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 334
fasta sequence
                              [TTTGAGTGAATTTACTATCAGTAACTATTCCCAAATGAGTAATACCACCAATGTGTGCCTGTTTAATTGCACATATCACCGCCTCAATTTCTGCTCTATTATTTGTTTGCTCTCCTTCTAAACGCTCAGAGACATTCCATGGATGATTAGGTCCCCAGTAAACACCATAACCAGCACGACGATCATCATGTGCACCGTTACATGAACCATCAGTATAAACCATTACACGTCGCGGGCATGATGCATCAACTCGAGAAGACACCGACGCTACGACCGACTCGTACACCATAAAAAGGCATTTTAAATGTCGCATACGCCTTGGGCGCCTAAAACA]

[+] EMBL CD098170             [TTTGAGTGAATTTACTATCAGTAACTATTCCCAAATGAGTAATACCACCAATGTGTGCCTGTTTAATTGCACATATCACCGCCTCAATTTCTGCTCTATTATTTGTTTGCTCTCCTTCTAAACGCTCAGAGACATTCCATGGATGATTAGGTCCCCAGTAAACACCATAACCAGCACGACGATCATCATGTGCACCGTTACATGAACCATCAGTATAAACCATTACACGTCGCGGGCATGATGCATCAACTCGAGAAGACACCGACGCTACGACCGACTCGTACACCATAAAAAGGCATTTTAAATGTCGCATACGCCTTGGGCGCCTAAAAC ]
[-] EMBL CD097838             [ TTGAGTGAATTTACTATCAGTAACTATTCCCAAATGAGTAACACCACCAATGTGTGCCTGTTTAATTGCACATATCACCGCCTCAATTTCTGCTCTATTATTTGTTTGCTCTCCTTCTAAACGCTCAGAGACATTCCATGGATGATTAGGTCCCCAGTAAACACCATAACCAGCACGACGATCATCATGTGCACCGTTACATGAACCATCAGTATAAACCATTACACGTCGCGGGCATGATGCATCAACTCGAGAAGACACCGACGCTACGACCGACTCGTACACCATAAAAAGGCATTTTAAATGTCGCATACGCCTTGGGCGCCTAAAACA]
[+] EMBL CD187324             [                                                                                          CTGCTCTATTATTTGTTTGCTCTCCTTCTAAACGCTCAGAGACATTCCATGGATGATTAGGTCCCCAGTAAACACCATAACCAGCACGACGATCATCATGTGCACCGTTACATGAACCATCAGTATAAACCATTACACGTCGCGGGCATGATGCATCAACTCGAGAAGACACCGACGCTACGACCGACTCGTACACCATAAAAAGGCATTTTAAATGTCGCATACGCCTTGGGCGCCTAAAAC ]


>consensus_10550#4 TTTGAGTGAATTTACTATCAGTAACTATTCCCAAATGAGTAATACCACCAATGTGTGCCT GTTTAATTGCACATATCACCGCCTCAATTTCTGCTCTATTATTTGTTTGCTCTCCTTCTA AACGCTCAGAGACATTCCATGGATGATTAGGTCCCCAGTAAACACCATAACCAGCACGAC GATCATCATGTGCACCGTTACATGAACCATCAGTATAAACCATTACACGTCGCGGGCATG ATGCATCAACTCGAGAAGACACCGACGCTACGACCGACTCGTACACCATAAAAAGGCATT TTAAATGTCGCATACGCCTTGGGCGCCTAAAACA



consensusID : consensus_10550#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 204
fasta sequence
                              [AGCTCGGTACCCCTACTGTATGTAATGCTCTTCAGGAGATAACTTGGTCGGTAACGGATCTCGACCATCCAGGTCATTATTCATGCTCCCAATCTTTCGCTTTTTCGAGAGTACAGTTCCAACCTCATGCCCAGCTTCAATAAACTTTATAGCTTCATCATAGGAAGTGAATTTCTTAAAGCAAGCTCCAGCGTAGCCATTTAC]

[+] EMBL CD129183             [AGCTCGGTACCCCTACTGTATGTAATGCTCTTCAGGAGATAACTTGGTCGGTAACGGATCTCGACCATCCAGGTCATTATTCATGCTCCCAATCTTTCGCTTTTTCGAGAGTACAGTTCCAACCTCATGCCCAGCTTCAATAAACTTTATAGCTTCATCATAGGAAGTGAATTTCTTAAAGCAAGCTCCAGCGTAGCCATTTAC]


>consensus_10550#5 AGCTCGGTACCCCTACTGTATGTAATGCTCTTCAGGAGATAACTTGGTCGGTAACGGATC TCGACCATCCAGGTCATTATTCATGCTCCCAATCTTTCGCTTTTTCGAGAGTACAGTTCC AACCTCATGCCCAGCTTCAATAAACTTTATAGCTTCATCATAGGAAGTGAATTTCTTAAA GCAAGCTCCAGCGTAGCCATTTAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10550#1      ---------------TGATTGGGCCGGCCCGGGCTGGACAAAACTAAACGTACACAAAAG 45
consensus_10550#2      ------------------------------------------------------------
consensus_10550#3      ------------------------------------------------------------
consensus_10550#0      GGCTTCTTCATTGCCGTGTACGCCACGATGACTACGGACATGGTACCAGATTATTTCAAT 60
consensus_10550#5      ------------------------------------------------------------
consensus_10550#4      ------------------------------------------------------------
                                                                                   

consensus_10550#1      AATAACAGAGGCGCTATAAGCCCCAATGTCAATACCATGATGAGTATCTGAAATGGAAAC 105
consensus_10550#2      ------------------------------------------------------------
consensus_10550#3      ------------------------------------------------------------
consensus_10550#0      TCCTGATTCAGCGATAACTTCAAGTAATCGTTTAACTGGTTCTTTTAATTTAGCATCTTC 120
consensus_10550#5      ------------------------------------------------------------
consensus_10550#4      ------------------------------------------------------------
                                                                                   

consensus_10550#1      TGATTTAGAGGTAATCTTAACGACCTGGGAGCTTAGCCTAAGAGCTTGAGTAAAAACTAC 165
consensus_10550#2      ------------------------------------------------------------
consensus_10550#3      ------------------------------------------------------------
consensus_10550#0      ACCATTGGCTAATTTCCAGGCATTTCGCGCCCACCGTTGACCCCATTCTGTTGCACAGTT 180
consensus_10550#5      ------------------------------------------------------------
consensus_10550#4      ------------------------------------------------------------
                                                                                   

consensus_10550#1      GTGAGTTTGGTCATATACAGCTTTTCTGAAAATACTAAACACATACCTGTTTTCAAATCT 225
consensus_10550#2      ------------------------------------------------------------
consensus_10550#3      ------------------------------------------------------------
consensus_10550#0      TTGAGTGAATTTACTATCAGTAACTATTCCCAAATGAGTAATACCACCAATGTGTGCCTG 240
consensus_10550#5      ------------------------------------------------------------
consensus_10550#4      ------------------------------------------------------------
                                                                                   

consensus_10550#1      CACATGAATAACTTTTACGAGAAAAATCGATGGGGTCAACTAAATAAATGTAAATAATAG 285
consensus_10550#2      ------------------------------------------------------------
consensus_10550#3      ------------------------------------------------------------
consensus_10550#0      TTTAATTGCACATATCACCGCCTCAATTTCTGCTCTATTATTTGTTTGCTCTCCTTCTAA 300
consensus_10550#5      ------------------------------------------------------------
consensus_10550#4      ------------------------------------------------------------
                                                                                   

consensus_10550#1      TAATATCAACAGTAGTACGATCCGATATATCAAATAATTGATGCTGATTATTTGCCACAA 345
consensus_10550#2      --------------GTACGCCACGATG-ACTACGGACATGGTACTTGTTAGCTACCAAAT 45
consensus_10550#3      ------------------------------------------------------------
consensus_10550#0      ACGCTCAGAGACATTCCATGGATGATTAGGTCCCCAGTAAACACCATAACCAGCACGACG 360
consensus_10550#5      ------------------------------------------------------------
consensus_10550#4      ------------------------------------------------------------
                                                                                   

consensus_10550#1      ACACTGACAAAG-ATAGTAAACGATACACAAGATTATCCATATTATTTGATAAATGGTAT 404
consensus_10550#2      CCAATCACCAATCATTGTAAA-AATGCC---GATTCCAAAAATTTATTG-TGGCTTGAAC 100
consensus_10550#3      ------------------------------------------------------------
consensus_10550#0      ATCATCATGTGCACCGTTACATGAACCATCAGTATAAACCATTACACGTCGCGGGCATGA 420
consensus_10550#5      ------------------------------------------------------------
consensus_10550#4      ------------------------------------------------------------
                                                                                   

consensus_10550#1      GACGCTAAAGTTTATAACACGATTACTCCATAATTATGTTAAGAGGAAGACAGCGAGTCC 464
consensus_10550#2      --TGCTGACCGTTAAAATA-ATTGACTGCTAAGCAAAATTCAAATTTTGGTAG-GAGCAT 156
consensus_10550#3      -----------------------------------GAGTCTGCTTCTTCATTG-CCGTGT 24
consensus_10550#0      TGCATCATGATAAAATGTTAGAGTGCTTGGAACATGGTCACTACTG-ATGTAA-TGCTCT 478
consensus_10550#5      -----------------------AGCTCGGTAC-----CCCTACTGTATGTAA-TGCTCT 31
consensus_10550#4      ---------TTTGAGTGAATTTACTATCAGTAACTATTCCCAAATG--AGTAA-TACCAC 48
                                                                                   

consensus_10550#1      ACACTAAAA-AGCAAAAAAATTAC----CCAGATTATTTCAATTCCTGATTCAGCGATAA 519
consensus_10550#2      AGATTTCTTTAGCAGTGCGAACGC----CCAGATTATTTCAATTCCTGATTCAGCGATAA 212
consensus_10550#3      ACGCCACGGTGACTACGGACATGGTA--CCAGATTATTTCAATTCCTGATTCAGCGATAA 82
consensus_10550#0      TCAGGAGATAACTTGGTCGGTAACGGATCTCGACCATCCAGGTCATTATTC-----ATGC 533
consensus_10550#5      TCAGGAGATAACTTGGTCGGTAACGGATCTCGACCATCCAGGTCATTATTC-----ATGC 86
consensus_10550#4      CAATGTGT--GCCTGTTTAATTGCACATATC-ACCGCCTCAATTTCTGCTC------TAT 99
                                                       *         *   *  *       *  

consensus_10550#1      CTTCAAGTATTCGTTTAACTGGTTCTTTTAATTTAGCATCTTCACCATTGGCTAATTTCC 579
consensus_10550#2      CTTCAAGTAATCGTTTGACTGGTTCTTTTAATTTAGCATCTTCACCATTGGCTAATTTCC 272
consensus_10550#3      CTTCAAGTAATCGTTTAACTGGTTCTTTTAATTTAGCATCTTCACCATTGGCTAATTTCC 142
consensus_10550#0      TCCCAATCTTTCGCTTTTTCGAGAGTACAGTTCCAACCTC---ATGCCCAG----CTTCA 586
consensus_10550#5      TCCCAATCTTTCGCTTTTTCGAGAGTACAGTTCCAACCTC---ATGCCCAG----CTTCA 139
consensus_10550#4      TATTTGTTTGCTCTCCTTCTAAACGCTCAGAGACATTCCATGGATGATTAGGT--CCCCA 157
                                                         *        *      *       * 

consensus_10550#1      AGGCATTTCGCGCCCACCGTTGACCCCATTCTGTTGCACAGTTTTGAGTGAATTTACTAT 639
consensus_10550#2      AGGCATTTCGCGCCCACCGTTGACCCCATTCTGTTGCACAGTTTTGAGTGAATTTACTAT 332
consensus_10550#3      AGGCATTTCGCGCCCACCGTTGACCCCATTCTGTTGCACAGTTTTGAGTGAATTTACTAT 202
consensus_10550#0      ATAAACTTTATAGCTT-CATCATAGGAAGTGAAT----TTCTTAAAGCAAGCTCCAGCGT 641
consensus_10550#5      ATAAACTTTATAGCTT-CATCATAGGAAGTGAAT----TTCTTAAAGCAAGCTCCAGCGT 194
consensus_10550#4      GTAAACACCATAACCAGCACGACGATCATCATGTG-CACCGTTACATGAACCATCAGTAT 216
                           *        *   *         *     *       **            *   *

consensus_10550#1      CAGTAACTATTCCCAAATGAGTAATACCACCAATGTGTGCCTGTTTAATTGCACATATCA 699
consensus_10550#2      CAGTAACTATTCCCAAATGAGTAATACCACCAATGTGTGCCTGTTTAATTGCACATATCA 392
consensus_10550#3      CAGTAACTATTCCCAAATGAGTAATACCACCAATGTGTGCCTGTTTAATTGCACATATCA 262
consensus_10550#0      AGCCATTTACAAGGTCTTTGCACTCAGACCCAATTACTTCATAGTTAAAAACTTCATAGG 701
consensus_10550#5      AGCCATTTAC-------------------------------------------------- 204
consensus_10550#4      AAACCATTACACGTCGCGGGCATGATGCATCAACTCGAGAAGACACCGACGCTACGACCG 276
                              **                                                   

consensus_10550#1      CCGCCTAATTTAAAGAAATGCATTAAAAAAGAATCATAATTTTTTT-------------- 745
consensus_10550#2      CCGCCTAATTTAAAGAAATGCATTA----------------------------------- 417
consensus_10550#3      CCGCCTCAATTTCTGC--TCTATTATTTGTTTGCTCTCCTTCTAAACGCTCAGAGACATT 320
consensus_10550#0      ACTCACCAACTCGAGAAGACACCGACGCTACGACCGACTCGTACACCATAAAAAGGCATT 761
consensus_10550#5      ------------------------------------------------------------
consensus_10550#4      ACTCGTACACCATAAAAAGGCATTTTAAATGTCGCATACGCCTTGGGCGCCTAAAACA-- 334
                                                                                   

consensus_10550#1      ------------------------------------------------
consensus_10550#2      ------------------------------------------------
consensus_10550#3      CCATGGATGATTAGGTCCCCAGTAAACACCATAATAGAGCAAAAAAAG 368
consensus_10550#0      TTAAATATCGCATACGCCTTGGGCGCCTAAAACA-------------- 795
consensus_10550#5      ------------------------------------------------
consensus_10550#4      ------------------------------------------------
                                                                       




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)